mRNA_F-distichus_contig97395.19194.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97395.19194.1
Unique NamemRNA_F-distichus_contig97395.19194.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97395.19194.1 vs. uniprot
Match: A0A6H5KK84_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK84_9PHAE)

HSP 1 Score: 117 bits (293), Expect = 6.960e-29
Identity = 63/79 (79.75%), Postives = 70/79 (88.61%), Query Frame = 1 
Query:    4 ETRMSMLALLESVVKQREVAEEALRPHAECLVREMVLPNAVWRAGLVAATVRKVAVAVLYTALRRNKIGVETVYATAEQ 240
            E R+SMLALLE VVK   V EE+LRPHAE +++EMVLPNAVWRAGLVAATVRKVA+AVLYTALR NKIGVE VYA+AEQ
Sbjct:  468 EVRLSMLALLECVVKHDGVTEESLRPHAETMLKEMVLPNAVWRAGLVAATVRKVAIAVLYTALRGNKIGVEAVYASAEQ 546
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BLAST of mRNA_F-distichus_contig97395.19194.1 vs. uniprot
Match: D7FI57_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI57_ECTSI)

HSP 1 Score: 115 bits (289), Expect = 2.530e-28
Identity = 63/79 (79.75%), Postives = 69/79 (87.34%), Query Frame = 1 
Query:    4 ETRMSMLALLESVVKQREVAEEALRPHAECLVREMVLPNAVWRAGLVAATVRKVAVAVLYTALRRNKIGVETVYATAEQ 240
            E R+SMLALLE VVK   V EE+LRPHAE L++EMVLPNAVWRAGLVAA VRKVA+AVLYTALR NKIGVE VYA+AEQ
Sbjct:  661 EVRLSMLALLECVVKHDGVTEESLRPHAETLLKEMVLPNAVWRAGLVAAPVRKVAIAVLYTALRGNKIGVEAVYASAEQ 739
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BLAST of mRNA_F-distichus_contig97395.19194.1 vs. uniprot
Match: A0A835YY58_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YY58_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.760e-9
Identity = 39/97 (40.21%), Postives = 55/97 (56.70%), Query Frame = 1 
Query:    4 ETRMSMLALLESVVKQREV------------------AEEALRPHAECLVREMVLPNAVWRAGLVAATVRKVAVAVLYTALRRNKIGVETVYATAEQ 240
            E R+SM+ALLESV+                       A  AL PHA  +V  M+LPNAVWRAG+VA+T+RKV +A L++ LR  +I    +++ A +
Sbjct:   78 EMRLSMMALLESVMSAESAPGSPSPAVTVTGETAATAAARALEPHAHEVVVGMLLPNAVWRAGMVASTIRKVTIACLHSMLRAGRITKPVLFSCAAE 174
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BLAST of mRNA_F-distichus_contig97395.19194.1 vs. uniprot
Match: A0A1V9Z755_9STRA (Uncharacterized protein n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9Z755_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.010e-8
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    4 ETRMSMLALLESVVKQREVAEEALRPHAECLVREMVLPNAVWRAGLVAATVRKVAVAVLYTALRRN 201
            + R++ LALLE+++   +VA  A RP A  L+ + + PN VW+AG VAAT+RKVA+A LYT LR+ 
Sbjct:  611 DVRLAFLALLETLLGHPDVAP-AFRPFASTLLIKAITPNIVWQAGKVAATIRKVAMASLYTLLRQG 675
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BLAST of mRNA_F-distichus_contig97395.19194.1 vs. uniprot
Match: A0A5D6XR59_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XR59_9STRA)

HSP 1 Score: 53.1 bits (126), Expect = 2.920e-6
Identity = 31/78 (39.74%), Postives = 50/78 (64.10%), Query Frame = 1 
Query:    1 AETRMSMLALLESVVKQREVAEEALRPHAECLVREMVLPNAVWRAGLVAATVRKVAVAVLYTALRRNKIGVETVYATA 234
            A+ R++ LALLE+++    + + + RP +  L+   ++PN VW+ G VAAT+RKVAVA +YT LR+       ++ TA
Sbjct:  628 ADVRLAFLALLETMLGTDSIFQ-SFRPFSTPLLLNGIIPNIVWQGGRVAATIRKVAVACVYTLLRQGLADQPCLFETA 704
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BLAST of mRNA_F-distichus_contig97395.19194.1 vs. uniprot
Match: A0A1W0A2N6_9STRA (Uncharacterized protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A2N6_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.910e-5
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 1 
Query:    4 ETRMSMLALLESVVKQREVAEEALRPHAECLVREMVLPNAVWRAGLVAATVRKVAVAVLYTALRRN 201
            + R++ LALLE+++    +  +A  P A  L+   + PN VW+AG VAAT+RKVA+A +YT LR+ 
Sbjct:  609 DVRLAFLALLETMLGNT-LMYKAFEPFASKLLINGITPNIVWQAGKVAATIRKVAMACMYTLLRQG 673
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BLAST of mRNA_F-distichus_contig97395.19194.1 vs. uniprot
Match: A0A7S2EBG5_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S2EBG5_9STRA)

HSP 1 Score: 50.8 bits (120), Expect = 1.920e-5
Identity = 26/75 (34.67%), Postives = 46/75 (61.33%), Query Frame = 1 
Query:   10 RMSMLALLESVVKQREVAEEALRPHAECLVREMVLPNAVWRAGLVAATVRKVAVAVLYTALRRNKIGVETVYATA 234
            R+S++ALLE+VV  + +    L P    L+   ++PN  WRAG +A+ +RK++ A L++ LR +    + ++ TA
Sbjct:  864 RISIMALLETVVSDKSLPRHLLHPFTAKLIESSIIPNMQWRAGGMASALRKLSAATLFSLLRFDGATADCLFQTA 938
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97395.19194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KK84_9PHAE6.960e-2979.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FI57_ECTSI2.530e-2879.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835YY58_9STRA1.760e-940.21Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A1V9Z755_9STRA5.010e-850.00Uncharacterized protein n=1 Tax=Achlya hypogyna Ta... [more]
A0A5D6XR59_9STRA2.920e-639.74Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A1W0A2N6_9STRA1.910e-543.94Uncharacterized protein n=1 Tax=Thraustotheca clav... [more]
A0A7S2EBG5_9STRA1.920e-534.67Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97395contigF-distichus_contig97395:390..1445 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.8
Seed ortholog evalue6.8e-23
Seed eggNOG ortholog2880.D7FI57
Preferred nameHEATR2
KEGG koko:K19759
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001539,GO:0001578,GO:0003008,GO:0003341,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007600,GO:0007605,GO:0007610,GO:0007626,GO:0008150,GO:0008344,GO:0009987,GO:0016043,GO:0022607,GO:0030030,GO:0030031,GO:0030317,GO:0030534,GO:0032501,GO:0034622,GO:0035082,GO:0036158,GO:0036159,GO:0040011,GO:0043933,GO:0044085,GO:0044424,GO:0044464,GO:0044782,GO:0045505,GO:0048870,GO:0050877,GO:0050954,GO:0051179,GO:0051674,GO:0060271,GO:0060285,GO:0060294,GO:0065003,GO:0070286,GO:0070925,GO:0071840,GO:0097722,GO:0120031,GO:0120036
EggNOG free text desc.inner dynein arm assembly
EggNOG OGs2CMTW@1,2QRXT@2759
Ec32 ortholog descriptionArmadillo-type fold
Ec32 orthologEc-10_003630.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Exons2
Model size240
Cds size228
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97395.19194.1prot_F-distichus_contig97395.19194.1Fucus distichus monoicouspolypeptideF-distichus_contig97395 402..1445 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.2480006-UTR-F-distichus_contig97395:389..4011622931154.2480006-UTR-F-distichus_contig97395:389..401Fucus distichus monoicousUTRF-distichus_contig97395 390..401 +
1690886181.7511613-UTR-F-distichus_contig97395:389..4011690886181.7511613-UTR-F-distichus_contig97395:389..401Fucus distichus monoicousUTRF-distichus_contig97395 390..401 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.2686446-CDS-F-distichus_contig97395:401..5511622931154.2686446-CDS-F-distichus_contig97395:401..551Fucus distichus monoicousCDSF-distichus_contig97395 402..551 +
1690886181.763738-CDS-F-distichus_contig97395:401..5511690886181.763738-CDS-F-distichus_contig97395:401..551Fucus distichus monoicousCDSF-distichus_contig97395 402..551 +
1622931154.289847-CDS-F-distichus_contig97395:1367..14451622931154.289847-CDS-F-distichus_contig97395:1367..1445Fucus distichus monoicousCDSF-distichus_contig97395 1368..1445 +
1690886181.775604-CDS-F-distichus_contig97395:1367..14451690886181.775604-CDS-F-distichus_contig97395:1367..1445Fucus distichus monoicousCDSF-distichus_contig97395 1368..1445 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97395.19194.1

>prot_F-distichus_contig97395.19194.1 ID=prot_F-distichus_contig97395.19194.1|Name=mRNA_F-distichus_contig97395.19194.1|organism=Fucus distichus monoicous|type=polypeptide|length=76bp
MSMLALLESVVKQREVAEEALRPHAECLVREMVLPNAVWRAGLVAATVRK
VAVAVLYTALRRNKIGVETVYATAEQ
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mRNA from alignment at F-distichus_contig97395:390..1445+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97395.19194.1 ID=mRNA_F-distichus_contig97395.19194.1|Name=mRNA_F-distichus_contig97395.19194.1|organism=Fucus distichus monoicous|type=mRNA|length=1056bp|location=Sequence derived from alignment at F-distichus_contig97395:390..1445+ (Fucus distichus monoicous)
GCAGAGACGAGAATGAGTATGCTGGCGCTGCTAGAGAGCGTGGTGAAGCA
GCGGGAGGTTGCGGAGGAGGCCCTGCGACCTCACGCGGAGTGTCTCGTGA
GGGAGATGGTCCTGCCTAATGCCGTGTGGCGCGCCGGTCTGGTGGCGGCG
ACGGTCCGAAAGGTAACGAAGGCGTTGTGCGGTCAGGGTGTGATTGGTTG
ATGGGGTACGGTGATAGGGTTTGCGGCATGTCCCGCAGTTTACGGGATGA
ATTATCGGTGGTACGGTAAGGTACGGTAAGGTACAGTATGTACAATATAC
CAGGTACTTGCGTTACGATACTAATACTATTACTGAGCGTCTACGTTTTT
TTGGTTCGACGGCGGAAATTCGCGAGGGTGCGTGAGGAGGAGAGAAGAAA
CTTTATTATTGTAGCATATATCTAGGCAGTACAACAGAGTGCATACTCGT
AGCAAGTGTTGTACAGGGAGTAGTCTCATCGCTGTTAAAAAATAGTTTTG
TTTTGTTTGTTTTTGTACGTGGAGGCGTGCTTTGGTTATTAAAATTTGTT
CCACCTAAAAGTGTTGTGTCCCCCTTCACCGACTTATTCAACTACAGTAT
AGAAACAAAGTCATAATCAAGTGTACGGGGTGCGTACAATATGATACCAA
GTACTTGTACGGCGTAACATATTATTTATGATTTGTACCATACCAGTGTT
ACTAGTATTTTAATATTTTCCCTCCTATACTGATACCAGCAGTACTTTTC
TATCGGCATATAGTATTAATATCTACTTTTGTAGATATCCACACTCCAAC
CTCAGCAGTTTGCTTGTATCGTGCTTCGGATTACTTGCACGGGCAATGTA
GGCTACCTCTAGTAGATCAACAGCATCTTGCTCTACTGTACTGCATTTTA
CAAGTCTCTCGTCCTTATGCGAAACATCCCCGCTTGCCTCGCCCCCTCCC
CTCTATGCCGCCCCGCCACTCGCCTAAGGTGGCTGTCGCGGTTTTGTACA
CAGCGCTCAGGCGGAACAAGATAGGGGTTGAGACGGTGTACGCCACGGCC
GAGCAG
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Coding sequence (CDS) from alignment at F-distichus_contig97395:390..1445+

>mRNA_F-distichus_contig97395.19194.1 ID=mRNA_F-distichus_contig97395.19194.1|Name=mRNA_F-distichus_contig97395.19194.1|organism=Fucus distichus monoicous|type=CDS|length=456bp|location=Sequence derived from alignment at F-distichus_contig97395:390..1445+ (Fucus distichus monoicous)
ATGAGTATGCTGGCGCTGCTAGAGAGCGTGGTGAAGCAGCGGGAGGTTGC
GGAGGAGGCCCTGCGACCTCACGCGGAGTGTCTCGTGAGGGAGATGGTCC
TGCCTAATGCCGTGTGGCGCGCCGGTCTGGTGGCGGCGACGGTCCGAAAG
ATGAGTATGCTGGCGCTGCTAGAGAGCGTGGTGAAGCAGCGGGAGGTTGC
GGAGGAGGCCCTGCGACCTCACGCGGAGTGTCTCGTGAGGGAGATGGTCC
TGCCTAATGCCGTGTGGCGCGCCGGTCTGGTGGCGGCGACGGTCCGAAAG
GTGGCTGTCGCGGTTTTGTACACAGCGCTCAGGCGGAACAAGATAGGGGT
TGAGACGGTGTACGCCACGGCCGAGCAGGTGGCTGTCGCGGTTTTGTACA
CAGCGCTCAGGCGGAACAAGATAGGGGTTGAGACGGTGTACGCCACGGCC
GAGCAG
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