mRNA_F-distichus_contig97391.19192.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97391.19192.1
Unique NamemRNA_F-distichus_contig97391.19192.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97391.19192.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97391contigF-distichus_contig97391:1137..2009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_002360.1
Exons2
Model size437
Cds size435
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931154.040518-CDS-F-distichus_contig97391:1136..15081622931154.040518-CDS-F-distichus_contig97391:1136..1508Fucus distichus monoicousCDSF-distichus_contig97391 1137..1508 +
1690886181.667665-CDS-F-distichus_contig97391:1136..15081690886181.667665-CDS-F-distichus_contig97391:1136..1508Fucus distichus monoicousCDSF-distichus_contig97391 1137..1508 +
1622931154.0568986-CDS-F-distichus_contig97391:1944..20071622931154.0568986-CDS-F-distichus_contig97391:1944..2007Fucus distichus monoicousCDSF-distichus_contig97391 1945..2007 +
1690886181.6801238-CDS-F-distichus_contig97391:1944..20071690886181.6801238-CDS-F-distichus_contig97391:1944..2007Fucus distichus monoicousCDSF-distichus_contig97391 1945..2007 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97391.19192.1prot_F-distichus_contig97391.19192.1Fucus distichus monoicouspolypeptideF-distichus_contig97391 1137..2007 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97391.19192.1

>prot_F-distichus_contig97391.19192.1 ID=prot_F-distichus_contig97391.19192.1|Name=mRNA_F-distichus_contig97391.19192.1|organism=Fucus distichus monoicous|type=polypeptide|length=145bp
ATRLRDPGVDDGPLRRLRRSNSTRFRVKKRSGNLGLGRSNPGVGKGRCRL
DVESVDGTNETLGRSSRDVDRIGGAHGGRGDVGGMRSRGFRDVEGEAIAV
AAKLSAVIRKQDTMSALNILRAVQVGPLLEELASFTAIGPALRKL
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mRNA from alignment at F-distichus_contig97391:1137..2009+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97391.19192.1 ID=mRNA_F-distichus_contig97391.19192.1|Name=mRNA_F-distichus_contig97391.19192.1|organism=Fucus distichus monoicous|type=mRNA|length=873bp|location=Sequence derived from alignment at F-distichus_contig97391:1137..2009+ (Fucus distichus monoicous)
GCGACTAGATTGCGCGATCCCGGGGTCGATGACGGCCCCCTTCGTCGTCT
CCGTAGAAGCAACAGCACCCGCTTTAGAGTAAAAAAACGAAGCGGCAACT
TGGGCTTGGGAAGGAGCAACCCGGGGGTTGGCAAAGGCCGCTGTAGATTA
GACGTCGAGAGCGTCGACGGCACGAACGAAACTCTCGGCCGCAGTAGCCG
CGACGTCGACCGCATTGGAGGCGCCCACGGCGGCCGTGGTGACGTCGGCG
GTATGAGGTCGCGGGGCTTTCGTGACGTGGAGGGAGAAGCTATCGCAGTG
GCGGCTAAGCTGTCAGCGGTCATCCGAAAGCAGGACACGATGTCGGCTCT
GAATATCCTGCGCGCCGTGCAGGTACTGCGCAGCATCACAGGGTTACAGT
AGTCAAGGTCACGGTGACATTGGCGAGCAGTATACGTGTGCCTTCCTTCC
CGCGTTTCGACGGTTTCCATCGCCGAGCTTTGTTGGCGAACCTTCTTCGT
CTCGCTTGCGATCTTCTATCCCTCGCGCGGAACACACTCAATGTTATCCA
CTTCACTCGGGGCGCACGCCATGTAGAAATTTCGATGCTCCCAAAGCATT
GGTTTGCTCCCTGCCCCCCGCCCCCTCCGAAGCGCGTAATTTCTGCTGGA
TGATATCACGAATATTCTCACCGTGCTCGGTCTTTCTCCTCCCTACTCCA
GACCACCCCGTCTGCATCTTGCTTCAAAAAAAGTGCAACTCCTCTTGGTT
CATCACCCTCTGTTGACAGTCACCGATCCCCTCTCCCTCCTCGGATGCCC
TTTTGAAGGTCGGCCCGCTACTGGAAGAGCTCGCGTCGTTCACCGCGATC
GGTCCGGCGTTGCGAAAGCTCAA
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Coding sequence (CDS) from alignment at F-distichus_contig97391:1137..2009+

>mRNA_F-distichus_contig97391.19192.1 ID=mRNA_F-distichus_contig97391.19192.1|Name=mRNA_F-distichus_contig97391.19192.1|organism=Fucus distichus monoicous|type=CDS|length=870bp|location=Sequence derived from alignment at F-distichus_contig97391:1137..2009+ (Fucus distichus monoicous)
GCGACTAGATTGCGCGATCCCGGGGTCGATGACGGCCCCCTTCGTCGTCT
CCGTAGAAGCAACAGCACCCGCTTTAGAGTAAAAAAACGAAGCGGCAACT
TGGGCTTGGGAAGGAGCAACCCGGGGGTTGGCAAAGGCCGCTGTAGATTA
GACGTCGAGAGCGTCGACGGCACGAACGAAACTCTCGGCCGCAGTAGCCG
CGACGTCGACCGCATTGGAGGCGCCCACGGCGGCCGTGGTGACGTCGGCG
GTATGAGGTCGCGGGGCTTTCGTGACGTGGAGGGAGAAGCTATCGCAGTG
GCGGCTAAGCTGTCAGCGGTCATCCGAAAGCAGGACACGATGTCGGCTCT
GAATATCCTGCGCGCCGTGCAGGCGACTAGATTGCGCGATCCCGGGGTCG
ATGACGGCCCCCTTCGTCGTCTCCGTAGAAGCAACAGCACCCGCTTTAGA
GTAAAAAAACGAAGCGGCAACTTGGGCTTGGGAAGGAGCAACCCGGGGGT
TGGCAAAGGCCGCTGTAGATTAGACGTCGAGAGCGTCGACGGCACGAACG
AAACTCTCGGCCGCAGTAGCCGCGACGTCGACCGCATTGGAGGCGCCCAC
GGCGGCCGTGGTGACGTCGGCGGTATGAGGTCGCGGGGCTTTCGTGACGT
GGAGGGAGAAGCTATCGCAGTGGCGGCTAAGCTGTCAGCGGTCATCCGAA
AGCAGGACACGATGTCGGCTCTGAATATCCTGCGCGCCGTGCAGGTCGGC
CCGCTACTGGAAGAGCTCGCGTCGTTCACCGCGATCGGTCCGGCGTTGCG
AAAGCTCGTCGGCCCGCTACTGGAAGAGCTCGCGTCGTTCACCGCGATCG
GTCCGGCGTTGCGAAAGCTC
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