mRNA_F-distichus_contig97300.19184.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97300.19184.1
Unique NamemRNA_F-distichus_contig97300.19184.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig97300.19184.1 vs. uniprot
Match: D8LMF2_ECTSI (Similar to Isochorismate Synthase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMF2_ECTSI)

HSP 1 Score: 160 bits (404), Expect = 2.430e-42
Identity = 85/133 (63.91%), Postives = 100/133 (75.19%), Query Frame = 1
Query:   79 QSLTDPFVSWCVSRDVCPPSGVFLSASMPCRDFDSFAHGTSGVAAEKGGRAGFSRDNLGGGRRLRRVATNRGANGIDGVISSAMGYATGLRAPVTLLIGDIATLHDLGSLHALRGLDAS-TCRVTVVCVNNSG 474
            Q LT+PFV+WCVSR + P +G+FLSASMPCRD + FA    G    +G       D   GGRRL  VA+NRGA+GIDGV SSAMGYA GLR+  TLLIGD+ATLHDLGSLHAL+GLDA+ +C VT+VCVNN G
Sbjct: 1392 QPLTEPFVAWCVSRHIDPAAGLFLSASMPCRDVEVFADSGLGDLDGRG-----EEDRGSGGRRLSDVASNRGASGIDGVFSSAMGYAAGLRSAATLLIGDMATLHDLGSLHALKGLDAAGSCSVTMVCVNNGG 1519          
BLAST of mRNA_F-distichus_contig97300.19184.1 vs. uniprot
Match: A0A6H5JV35_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV35_9PHAE)

HSP 1 Score: 150 bits (378), Expect = 7.360e-39
Identity = 91/176 (51.70%), Postives = 108/176 (61.36%), Query Frame = 1
Query:   25 SEGVRSAPADAYAEDPLVQSLTDPFVSWCVSRDVCPPSGVFLSASMPCRDFDSFAHGTSGVAAEKGGRAGFSRDNLGGGRRLRRVATNRGANGIDGVISSAMG------------------------YATGLRAPVTLLIGDIATLHDLGSLHALRGLDAS-TCRVTVVCVNNSGK 477
            SEG R  PA    + PL    T+PFV+WCVSR + P +G+FLSASMPCRD + FA    G    +G       D   GGRRL  VA+NRGA+GIDGV SSAMG                        YA GLR+  TLLIGD+ATLHDLGSLHAL+GLDA+ +C VT+VCVNN G+
Sbjct: 1096 SEGGRGPPAQQQQQQPL----TEPFVAWCVSRHIDPAAGLFLSASMPCRDVEVFADSGLGDLDGRG-----EEDRGSGGRRLSDVASNRGASGIDGVSSSAMGCVPYARNTRRPMALPGFWHVLLLRYAAGLRSAATLLIGDMATLHDLGSLHALKGLDAAGSCPVTMVCVNNGGE 1262          
BLAST of mRNA_F-distichus_contig97300.19184.1 vs. uniprot
Match: A0A835ZAA5_9STRA (Thiamine diphosphate-binding protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZAA5_9STRA)

HSP 1 Score: 116 bits (291), Expect = 5.550e-29
Identity = 66/131 (50.38%), Postives = 81/131 (61.83%), Query Frame = 1
Query:   85 LTDPFVSWCVSRDVCPPSGVFLSASMPCRDFDSFA-HGTSGVAAEKGGRAGFSRDNLGGGRRLRRVATNRGANGIDGVISSAMGYATGLRAPVTLLIGDIATLHDLGSLHALRGLDASTCRVTVVCVNNSG 474
            L +P ++ CVS  + P +G+FLS SMPCRD D+FA H   G                     L  VA NRGANGIDGV+SSA+GYA GLR PVTLLIGD+A LHD+ +LH LR +      +T+VCVNN G
Sbjct:    7 LVEPAIARCVSAHLSPGAGLFLSNSMPCRDMDTFAQHSGPG--------------------NLCHVAMNRGANGIDGVVSSALGYAVGLRRPVTLLIGDMALLHDVNALHLLRQIPHP---ITIVCVNNGG 114          
BLAST of mRNA_F-distichus_contig97300.19184.1 vs. uniprot
Match: A0A4D9D2W1_9STRA (MR_MLE domain-containing protein n=6 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D2W1_9STRA)

HSP 1 Score: 104 bits (259), Expect = 7.500e-23
Identity = 65/134 (48.51%), Postives = 78/134 (58.21%), Query Frame = 1
Query:   85 LTDPFVSWCVSRDVCPPSGVFLSASMPCRDFDSFAHGTSGVAAEKGGRAGFSRDNLGGGRRLRRVATNRGANGIDGVISSAMGYATGLRAPVTLLIGDIATLHDLGSLHALRGLDASTCR----VTVVCVNNSG 474
            L +P  +  V+R +    G+FLS SMP RD ++FA   S  AA                  L  VA NRGA+GIDG++SSAMGYA GL  PVTLL+GD+A LHDL +LHAL G  AS       VTVV VNN G
Sbjct:  986 LNEPMTAHLVARLLPAGHGLFLSNSMPVRDMETFATLASTTAAPSAPAP------------LASVAMNRGASGIDGILSSAMGYAAGLGKPVTLLVGDMACLHDLNALHALSGASASASAPDTPVTVVLVNNGG 1107          
BLAST of mRNA_F-distichus_contig97300.19184.1 vs. uniprot
Match: A0A3M1NL11_9BACT (TPP_enzyme_C domain-containing protein (Fragment) n=1 Tax=Calditrichaeota bacterium TaxID=2212469 RepID=A0A3M1NL11_9BACT)

HSP 1 Score: 98.6 bits (244), Expect = 1.620e-22
Identity = 56/130 (43.08%), Postives = 76/130 (58.46%), Query Frame = 1
Query:   85 LTDPFVSWCVSRDVCPPSGVFLSASMPCRDFDSFAHGTSGVAAEKGGRAGFSRDNLGGGRRLRRVATNRGANGIDGVISSAMGYATGLRAPVTLLIGDIATLHDLGSLHALRGLDASTCRVTVVCVNNSG 474
            LT+P ++W VSR +   S +FL++SMP RDFD +A   SG+                      RVA NRGA+GIDG I+SA+GY+ GL  PV  ++GD+A LHD+ SLH LR L      + +V +NN G
Sbjct:    6 LTEPGLAWTVSRSIPEDSALFLASSMPVRDFDMYAF-PSGIT---------------------RVAANRGASGIDGTIASAVGYSRGLETPVIAVLGDLALLHDMNSLHLLRELSHP---MKIVVINNHG 110          
BLAST of mRNA_F-distichus_contig97300.19184.1 vs. uniprot
Match: A0A7S1MXA8_HEMAN (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1MXA8_HEMAN)

HSP 1 Score: 95.5 bits (236), Expect = 3.280e-22
Identity = 57/132 (43.18%), Postives = 77/132 (58.33%), Query Frame = 1
Query:   79 QSLTDPFVSWCVSRDVCPPSGVFLSASMPCRDFDSFAHGTSGVAAEKGGRAGFSRDNLGGGRRLRRVATNRGANGIDGVISSAMGYATGLRAPVTLLIGDIATLHDLGSLHALRGLDASTCRVTVVCVNNSG 474
            ++L +P+V++  + ++     +FLSASMP RD D F + ++   A                     VA+NRGA+GIDGV+SSA+GYA GL  PVTLLIGD A LHDLG+L  LR  +   C   V+ VNN G
Sbjct:    5 RALDEPYVAFRTTTELREGGALFLSASMPVRDADMFLNPSARNPAVH-------------------VASNRGASGIDGVVSSALGYAQGLARPVTLLIGDGAALHDLGALRCLRDSEQPVC---VIVVNNGG 114          
BLAST of mRNA_F-distichus_contig97300.19184.1 vs. uniprot
Match: A0A1V1WUA9_9DELT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=1 Tax=Desulfobacterales bacterium S7086C20 TaxID=1869302 RepID=A0A1V1WUA9_9DELT)

HSP 1 Score: 96.3 bits (238), Expect = 4.170e-20
Identity = 62/157 (39.49%), Postives = 86/157 (54.78%), Query Frame = 1
Query:    4 TPDVASFSEGVRSAPADAYAEDPLVQSLTDPFVSWCVSRDVCPPSGVFLSASMPCRDFDSFAHGTSGVAAEKGGRAGFSRDNLGGGRRLRRVATNRGANGIDGVISSAMGYATGLRAPVTLLIGDIATLHDLGSLHALRGLDASTCRVTVVCVNNSG 474
            TP ++S+ E + SA             L++P V+  VS+++ P  G+FL+ SMP RD DSFA G++G                        V  NRGA+GIDG I++A G+A G + PVTLLIGDIA LHDL SL+ L     S   +T + +NN+G
Sbjct:  364 TPYLSSWQEKMHSARKVFQVFADHESKLSEPVVAHLVSQNILPDHGLFLANSMPVRDMDSFA-GSNGALVP--------------------VGVNRGASGIDGTIATATGFAAGFKRPVTLLIGDIAFLHDLNSLNYLSN---SKYPITAIVINNNG 496          
BLAST of mRNA_F-distichus_contig97300.19184.1 vs. uniprot
Match: A0A1V0DD88_9BACT (2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase n=2 Tax=Bacteroidetes TaxID=976 RepID=A0A1V0DD88_9BACT)

HSP 1 Score: 96.3 bits (238), Expect = 4.190e-20
Identity = 60/131 (45.80%), Postives = 76/131 (58.02%), Query Frame = 1
Query:   82 SLTDPFVSWCVSRDVCPPSGVFLSASMPCRDFDSFAHGTSGVAAEKGGRAGFSRDNLGGGRRLRRVATNRGANGIDGVISSAMGYATGLRAPVTLLIGDIATLHDLGSLHALRGLDASTCRVTVVCVNNSG 474
            +L++P V+  V+R + P  G+FL++SMP RD D +A G  G AA                     VA NRGA+GIDG ++SA G+A GL  PVTLLIGD+A LHDL SL  LR L      V VV +NN G
Sbjct:  389 TLSEPLVARLVTRHLPPEHGLFLASSMPVRDADMYAVG--GAAAVP-------------------VAANRGASGIDGTVASAAGFAAGLARPVTLLIGDLALLHDLNSLALLRRLPVP---VVVVAINNDG 495          
BLAST of mRNA_F-distichus_contig97300.19184.1 vs. uniprot
Match: A0A1Q7ZRX4_9CYAN (TPP_enzyme_C domain-containing protein n=1 Tax=Cyanobacteria bacterium 13_1_40CM_2_61_4 TaxID=1805101 RepID=A0A1Q7ZRX4_9CYAN)

HSP 1 Score: 92.4 bits (228), Expect = 7.070e-20
Identity = 57/131 (43.51%), Postives = 78/131 (59.54%), Query Frame = 1
Query:   82 SLTDPFVSWCVSRDVCPPSGVFLSASMPCRDFDSFAHGTSGVAAEKGGRAGFSRDNLGGGRRLRRVATNRGANGIDGVISSAMGYATGLRAPVTLLIGDIATLHDLGSLHALRGLDASTCRVTVVCVNNSG 474
            +L++P V+  VS+++    G+FL +SMP RD ++FA          GG +              RVA NRGA+GIDG ++SA G+A GL   VTLLIGD+A LHDL SL   R LDA    +T+V +NN+G
Sbjct:   50 TLSEPLVARLVSQEIGAERGLFLGSSMPVRDMNTFA--------APGGPS-------------TRVAANRGASGIDGTVASATGFAQGLNHRVTLLIGDLALLHDLNSLSLTRSLDAP---MTIVVLNNNG 156          
BLAST of mRNA_F-distichus_contig97300.19184.1 vs. uniprot
Match: A0A0G4GZP4_VITBC (MR_MLE domain-containing protein n=5 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GZP4_VITBC)

HSP 1 Score: 95.5 bits (236), Expect = 9.180e-20
Identity = 60/132 (45.45%), Postives = 78/132 (59.09%), Query Frame = 1
Query:   82 SLTDPFVSWCVSRDVCPPSGVFLSASMPCRDFDSFAHGTSGVA-AEKGGRAGFSRDNLGGGRRLRRVATNRGANGIDGVISSAMGYATGLRAPVTLLIGDIATLHDLGSLHALRGLDASTCRVTVVCVNNSG 474
            +L +P V+   +       G+FLS+SMP RD DSF      +A A   GR+               VA+NRGANGIDGV+ SA+GY+ GL  PVT+L+GD+A LHD+G LH L+   AS   V+VV VNN G
Sbjct: 1106 ALCEPEVARLAASSAQSTGGLFLSSSMPIRDADSFGSLPDAIATAPDVGRSDEGPVGC--------VASNRGANGIDGVLHSAIGYSLGLGQPVTVLLGDVAALHDMGGLHTLKQSGAS---VSVVVVNNGG 1226          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97300.19184.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMF2_ECTSI2.430e-4263.91Similar to Isochorismate Synthase n=1 Tax=Ectocarp... [more]
A0A6H5JV35_9PHAE7.360e-3951.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835ZAA5_9STRA5.550e-2950.38Thiamine diphosphate-binding protein (Fragment) n=... [more]
A0A4D9D2W1_9STRA7.500e-2348.51MR_MLE domain-containing protein n=6 Tax=Monodopsi... [more]
A0A3M1NL11_9BACT1.620e-2243.08TPP_enzyme_C domain-containing protein (Fragment) ... [more]
A0A7S1MXA8_HEMAN3.280e-2243.18Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A1V1WUA9_9DELT4.170e-2039.492-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
A0A1V0DD88_9BACT4.190e-2045.802-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1... [more]
A0A1Q7ZRX4_9CYAN7.070e-2043.51TPP_enzyme_C domain-containing protein n=1 Tax=Cya... [more]
A0A0G4GZP4_VITBC9.180e-2045.45MR_MLE domain-containing protein n=5 Tax=Vitrella ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97300contigF-distichus_contig97300:1330..1824 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score162.5
Seed ortholog evalue1.6e-37
Seed eggNOG ortholog2880.D8LMF2
KEGG rclassRC00588,RC01053,RC02148,RC02186,RC02475
KEGG koko:K02552,ko:K14759
KEGG ReactionR01717,R04031,R08165,R08166
KEGG Pathwayko00130,ko01053,ko01100,ko01110,ko01130,map00130,map01053,map01100,map01110,map01130
KEGG ModuleM00116
Hectar predicted targeting categoryother localisation
EggNOG free text desc.anthranilate synthase activity
EggNOG OGsCOG0147@1,COG0596@1,KOG1223@2759,KOG2382@2759
EC2.2.1.9,4.2.1.113,4.2.99.20,5.4.4.2
COG Functional cat.EH
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size495
Cds size495
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931153.1134021-CDS-F-distichus_contig97300:1329..18241622931153.1134021-CDS-F-distichus_contig97300:1329..1824Fucus distichus monoicousCDSF-distichus_contig97300 1330..1824 -
1690886181.2003872-CDS-F-distichus_contig97300:1329..18241690886181.2003872-CDS-F-distichus_contig97300:1329..1824Fucus distichus monoicousCDSF-distichus_contig97300 1330..1824 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97300.19184.1prot_F-distichus_contig97300.19184.1Fucus distichus monoicouspolypeptideF-distichus_contig97300 1330..1824 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97300.19184.1

>prot_F-distichus_contig97300.19184.1 ID=prot_F-distichus_contig97300.19184.1|Name=mRNA_F-distichus_contig97300.19184.1|organism=Fucus distichus monoicous|type=polypeptide|length=165bp
STPDVASFSEGVRSAPADAYAEDPLVQSLTDPFVSWCVSRDVCPPSGVFL
SASMPCRDFDSFAHGTSGVAAEKGGRAGFSRDNLGGGRRLRRVATNRGAN
GIDGVISSAMGYATGLRAPVTLLIGDIATLHDLGSLHALRGLDASTCRVT
VVCVNNSGKRTGAI*
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mRNA from alignment at F-distichus_contig97300:1330..1824-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97300.19184.1 ID=mRNA_F-distichus_contig97300.19184.1|Name=mRNA_F-distichus_contig97300.19184.1|organism=Fucus distichus monoicous|type=mRNA|length=495bp|location=Sequence derived from alignment at F-distichus_contig97300:1330..1824- (Fucus distichus monoicous)
AGCACCCCCGACGTCGCCTCTTTTAGCGAGGGTGTTCGCTCGGCTCCGGC TGATGCTTATGCTGAGGATCCCCTGGTTCAGAGCCTGACGGATCCGTTTG TGTCTTGGTGCGTATCCCGCGACGTCTGCCCCCCTTCCGGCGTGTTCCTG TCCGCGAGTATGCCGTGCCGGGATTTCGACTCGTTCGCCCATGGCACTAG CGGGGTGGCGGCGGAAAAAGGAGGGCGGGCGGGTTTTTCCCGCGATAATC TAGGCGGTGGGCGTCGATTGCGCCGCGTGGCGACGAACCGAGGCGCCAAC GGGATCGACGGCGTGATCAGTTCGGCGATGGGGTACGCAACGGGGCTGCG TGCCCCGGTGACCCTCCTGATCGGCGACATAGCGACGCTGCACGACCTGG GGTCGCTCCACGCTCTCAGAGGGCTCGACGCCTCGACCTGCCGGGTTACC GTGGTTTGCGTCAACAACTCGGGTAAGCGGACAGGGGCGATATAA
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Coding sequence (CDS) from alignment at F-distichus_contig97300:1330..1824-

>mRNA_F-distichus_contig97300.19184.1 ID=mRNA_F-distichus_contig97300.19184.1|Name=mRNA_F-distichus_contig97300.19184.1|organism=Fucus distichus monoicous|type=CDS|length=990bp|location=Sequence derived from alignment at F-distichus_contig97300:1330..1824- (Fucus distichus monoicous)
AGCACCCCCGACGTCGCCTCTTTTAGCGAGGGTGTTCGCTCGGCTCCGGC
TGATGCTTATGCTGAGGATCCCCTGGTTCAGAGCCTGACGGATCCGTTTG
TGTCTTGGTGCGTATCCCGCGACGTCTGCCCCCCTTCCGGCGTGTTCCTG
TCCGCGAGTATGCCGTGCCGGGATTTCGACTCGTTCGCCCATGGCACTAG
CGGGGTGGCGGCGGAAAAAGGAGGGCGGGCGGGTTTTTCCCGCGATAATC
TAGGCGGTGGGCGTCGATTGCGCCGCGTGGCGACGAACCGAGGCGCCAAC
GGGATCGACGGCGTGATCAGTTCGGCGATGGGGTACGCAACGGGGCTGCG
TGCCCCGGTGACCCTCCTGATCGGCGACATAGCGACGCTGCACGACCTGG
GGTCGCTCCACGCTCTCAGAGGGCTCGACGCCTCGACCTGCCGGGTTACC
GTGGTTTGCGTCAACAACTCGGGTAAGCGGACAGGGGCGATATAAAGCAC
CCCCGACGTCGCCTCTTTTAGCGAGGGTGTTCGCTCGGCTCCGGCTGATG
CTTATGCTGAGGATCCCCTGGTTCAGAGCCTGACGGATCCGTTTGTGTCT
TGGTGCGTATCCCGCGACGTCTGCCCCCCTTCCGGCGTGTTCCTGTCCGC
GAGTATGCCGTGCCGGGATTTCGACTCGTTCGCCCATGGCACTAGCGGGG
TGGCGGCGGAAAAAGGAGGGCGGGCGGGTTTTTCCCGCGATAATCTAGGC
GGTGGGCGTCGATTGCGCCGCGTGGCGACGAACCGAGGCGCCAACGGGAT
CGACGGCGTGATCAGTTCGGCGATGGGGTACGCAACGGGGCTGCGTGCCC
CGGTGACCCTCCTGATCGGCGACATAGCGACGCTGCACGACCTGGGGTCG
CTCCACGCTCTCAGAGGGCTCGACGCCTCGACCTGCCGGGTTACCGTGGT
TTGCGTCAACAACTCGGGTAAGCGGACAGGGGCGATATAA
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