mRNA_F-distichus_contig97232.19178.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97232.19178.1
Unique NamemRNA_F-distichus_contig97232.19178.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97232.19178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97232contigF-distichus_contig97232:20..574 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size555
Cds size312
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97232.19178.1prot_F-distichus_contig97232.19178.1Fucus distichus monoicouspolypeptideF-distichus_contig97232 97..408 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.2865932-UTR-F-distichus_contig97232:19..961622931152.2865932-UTR-F-distichus_contig97232:19..96Fucus distichus monoicousUTRF-distichus_contig97232 20..96 +
1690886180.8266518-UTR-F-distichus_contig97232:19..961690886180.8266518-UTR-F-distichus_contig97232:19..96Fucus distichus monoicousUTRF-distichus_contig97232 20..96 +
1622931152.3220828-UTR-F-distichus_contig97232:408..5741622931152.3220828-UTR-F-distichus_contig97232:408..574Fucus distichus monoicousUTRF-distichus_contig97232 409..574 +
1690886180.8504322-UTR-F-distichus_contig97232:408..5741690886180.8504322-UTR-F-distichus_contig97232:408..574Fucus distichus monoicousUTRF-distichus_contig97232 409..574 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.3058949-CDS-F-distichus_contig97232:96..4081622931152.3058949-CDS-F-distichus_contig97232:96..408Fucus distichus monoicousCDSF-distichus_contig97232 97..408 +
1690886180.8392277-CDS-F-distichus_contig97232:96..4081690886180.8392277-CDS-F-distichus_contig97232:96..408Fucus distichus monoicousCDSF-distichus_contig97232 97..408 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97232.19178.1

>prot_F-distichus_contig97232.19178.1 ID=prot_F-distichus_contig97232.19178.1|Name=mRNA_F-distichus_contig97232.19178.1|organism=Fucus distichus monoicous|type=polypeptide|length=104bp
MYQVETHIQLIQFAHDEPRYNSIMMWFGTSNFCRPTWCLAVYYSLSRAFA
SSPASTNRLQYLFILPSIHNPHSFRCDSSSKEVRRATPPALLVRSGGFLL
ISR*
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mRNA from alignment at F-distichus_contig97232:20..574+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97232.19178.1 ID=mRNA_F-distichus_contig97232.19178.1|Name=mRNA_F-distichus_contig97232.19178.1|organism=Fucus distichus monoicous|type=mRNA|length=555bp|location=Sequence derived from alignment at F-distichus_contig97232:20..574+ (Fucus distichus monoicous)
TCCTTCCCGTCACGTTCGGGCATACCACTGCGTGCCGTAGTCCAGCCTTG
ACTTTCTCTGCAGCGATCCATTTTGCCATGTATCAGGTAGAAACTCATAT
TCAACTCATTCAATTTGCACACGATGAACCAAGATATAACTCAATTATGA
TGTGGTTTGGGACATCGAATTTTTGTCGGCCTACTTGGTGCCTTGCCGTA
TATTACTCTTTGTCGCGAGCATTTGCGTCCAGCCCAGCGTCCACCAACAG
ACTCCAGTATTTGTTTATTCTACCATCGATCCACAATCCGCATAGCTTCC
GGTGCGATTCCTCTTCGAAAGAGGTTAGGCGAGCAACCCCGCCAGCTCTC
TTGGTGAGATCAGGCGGCTTCCTGCTTATTTCAAGGTGAAACAGCCGTTT
GGGCGTGTTTGGCGCCACATTCTGCACCCTTGAGTCGCGACGTCAAACGA
GTGGGAGGGTATGACGTAAACGGATACTCATGTAATGCATACGAGGACGA
ACATGCGGCTTGTGAGGTTGTGGATGGGTGTAATCCCCCTGTGCTTCGTC
TCCTC
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Coding sequence (CDS) from alignment at F-distichus_contig97232:20..574+

>mRNA_F-distichus_contig97232.19178.1 ID=mRNA_F-distichus_contig97232.19178.1|Name=mRNA_F-distichus_contig97232.19178.1|organism=Fucus distichus monoicous|type=CDS|length=624bp|location=Sequence derived from alignment at F-distichus_contig97232:20..574+ (Fucus distichus monoicous)
ATGTATCAGGTAGAAACTCATATTCAACTCATTCAATTTGCACACGATGA
ACCAAGATATAACTCAATTATGATGTGGTTTGGGACATCGAATTTTTGTC
GGCCTACTTGGTGCCTTGCCGTATATTACTCTTTGTCGCGAGCATTTGCG
TCCAGCCCAGCGTCCACCAACAGACTCCAGTATTTGTTTATTCTACCATC
GATCCACAATCCGCATAGCTTCCGGTGCGATTCCTCTTCGAAAGAGGTTA
GGCGAGCAACCCCGCCAGCTCTCTTGGTGAGATCAGGCGGCTTCCTGCTT
ATTTCAAGGTGAATGTATCAGGTAGAAACTCATATTCAACTCATTCAATT
TGCACACGATGAACCAAGATATAACTCAATTATGATGTGGTTTGGGACAT
CGAATTTTTGTCGGCCTACTTGGTGCCTTGCCGTATATTACTCTTTGTCG
CGAGCATTTGCGTCCAGCCCAGCGTCCACCAACAGACTCCAGTATTTGTT
TATTCTACCATCGATCCACAATCCGCATAGCTTCCGGTGCGATTCCTCTT
CGAAAGAGGTTAGGCGAGCAACCCCGCCAGCTCTCTTGGTGAGATCAGGC
GGCTTCCTGCTTATTTCAAGGTGA
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