mRNA_F-distichus_contig97201.19176.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97201.19176.1
Unique NamemRNA_F-distichus_contig97201.19176.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97201.19176.1 vs. uniprot
Match: A0A6H5K5T2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K5T2_9PHAE)

HSP 1 Score: 141 bits (356), Expect = 3.080e-37
Identity = 70/76 (92.11%), Postives = 74/76 (97.37%), Query Frame = 1 
Query:   34 LSQVDSDLKPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPE 261
            L  VDSDLKPLPV+VRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEW+PS++VLEGVVILTRNPE
Sbjct:  896 LMTVDSDLKPLPVNVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWIPSSNVLEGVVILTRNPE 971
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BLAST of mRNA_F-distichus_contig97201.19176.1 vs. uniprot
Match: A0A0G4IJI4_PLABS (Uncharacterized protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IJI4_PLABS)

HSP 1 Score: 120 bits (302), Expect = 5.950e-30
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:   34 LSQVDSDLKPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPE 261
            L  +D +LKPLPVSVRVGQAV+TVGQAG PKTITGFQTHTTPVLLG  DRAELAT+E++P TSVLEG VIL +NPE
Sbjct:  820 LITLDEELKPLPVSVRVGQAVDTVGQAGSPKTITGFQTHTTPVLLGYNDRAELATDEYIPVTSVLEGFVILKKNPE 895
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BLAST of mRNA_F-distichus_contig97201.19176.1 vs. uniprot
Match: A0A836CK10_9STRA (26S proteasome non-ATPase regulatory subunit 2 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK10_9STRA)

HSP 1 Score: 119 bits (299), Expect = 1.510e-29
Identity = 60/76 (78.95%), Postives = 67/76 (88.16%), Query Frame = 1 
Query:   34 LSQVDSDLKPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPE 261
            L  VD D+KPL V+VRVGQAVETVGQAG+PKTITGFQTHTTPVLLGVRDRAELATNE++    VLEGVV+L RNP+
Sbjct:  844 LMAVDEDVKPLSVTVRVGQAVETVGQAGRPKTITGFQTHTTPVLLGVRDRAELATNEYMALGGVLEGVVVLRRNPD 919
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BLAST of mRNA_F-distichus_contig97201.19176.1 vs. uniprot
Match: D3B684_POLPP (26S proteasome regulatory subunit S2 n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3B684_POLPP)

HSP 1 Score: 118 bits (295), Expect = 5.240e-29
Identity = 60/88 (68.18%), Postives = 73/88 (82.95%), Query Frame = 1 
Query:    1 LFKNYIKRIF--FLSQVDSDLKPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNP 258
            LF + +  I+   L  +D +LKPLPVSVRVGQ+V+TVGQAGKPKTITGFQTHTTPVLLG  DRAELAT++++P +SVLEG+VIL  NP
Sbjct:  785 LFYSIVMSIYPRMLMTLDENLKPLPVSVRVGQSVDTVGQAGKPKTITGFQTHTTPVLLGFNDRAELATDDYIPLSSVLEGIVILKPNP 872
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BLAST of mRNA_F-distichus_contig97201.19176.1 vs. uniprot
Match: A0A6A5ADN9_9STRA (RPN1_C domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A5ADN9_9STRA)

HSP 1 Score: 108 bits (270), Expect = 6.250e-29
Identity = 54/75 (72.00%), Postives = 63/75 (84.00%), Query Frame = 1 
Query:   34 LSQVDSDLKPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNP 258
            L  VD    PLPVSVRVGQAVE VGQAG+PK+ITGFQTH TPVLL V+DRAELAT+E++  T+VLEG+VIL +NP
Sbjct:   25 LITVDEQGNPLPVSVRVGQAVEVVGQAGRPKSITGFQTHNTPVLLNVKDRAELATDEYIALTNVLEGIVILRKNP 99
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BLAST of mRNA_F-distichus_contig97201.19176.1 vs. uniprot
Match: A0A7S2NS19_9EUKA (Hypothetical protein n=1 Tax=Haptolina brevifila TaxID=156173 RepID=A0A7S2NS19_9EUKA)

HSP 1 Score: 113 bits (283), Expect = 1.080e-28
Identity = 58/76 (76.32%), Postives = 66/76 (86.84%), Query Frame = 1 
Query:   34 LSQVDSDLKPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPE 261
            L  VD DLKPL VSVRVGQAV+TVGQAG+PKTITGFQTHTTPVLL   +RAELAT+E++  TSVLEGVVIL +NP+
Sbjct:  204 LVTVDEDLKPLAVSVRVGQAVDTVGQAGRPKTITGFQTHTTPVLLAAGERAELATDEYLGLTSVLEGVVILRKNPD 279
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BLAST of mRNA_F-distichus_contig97201.19176.1 vs. uniprot
Match: UPI0009E2E7D7 (26S proteasome non-ATPase regulatory subunit 2-like n=1 Tax=Orbicella faveolata TaxID=48498 RepID=UPI0009E2E7D7)

HSP 1 Score: 107 bits (268), Expect = 1.460e-28
Identity = 52/72 (72.22%), Postives = 61/72 (84.72%), Query Frame = 1 
Query:   46 DSDLKPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPE 261
            D+DL+PLPVSVRVGQAV+ VGQAGKPKTITGFQTHTTPVLL   +RAELAT E++    ++EG VIL +NPE
Sbjct:   33 DTDLRPLPVSVRVGQAVDVVGQAGKPKTITGFQTHTTPVLLAYGERAELATEEYISLAPIMEGFVILKKNPE 104
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BLAST of mRNA_F-distichus_contig97201.19176.1 vs. uniprot
Match: A0A8K1CC17_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CC17_PYTOL)

HSP 1 Score: 116 bits (291), Expect = 1.820e-28
Identity = 57/76 (75.00%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:   34 LSQVDSDLKPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPE 261
            L  +D DL PLPVSVRVGQAV+ VGQAG+PK+ITGFQTHTTPVLL V+DRAELAT+E++P T+VLEGVVIL +NP+
Sbjct:  817 LITLDEDLNPLPVSVRVGQAVDIVGQAGRPKSITGFQTHTTPVLLNVKDRAELATDEYLPLTNVLEGVVILRKNPD 892
[Close]
BLAST of mRNA_F-distichus_contig97201.19176.1 vs. uniprot
Match: A0A0P1AZB9_PLAHL (26s proteasome non-atpase regulatory subunit 2 n=2 Tax=Peronosporaceae TaxID=4777 RepID=A0A0P1AZB9_PLAHL)

HSP 1 Score: 116 bits (290), Expect = 2.480e-28
Identity = 58/75 (77.33%), Postives = 66/75 (88.00%), Query Frame = 1 
Query:   34 LSQVDSDLKPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNP 258
            L  +D +L PLPVSVRVGQAVE VGQAG+PK+ITGFQTHTTPVLL VRDRAELAT E++P T+VLEGVVIL +NP
Sbjct:  817 LITLDEELNPLPVSVRVGQAVEIVGQAGRPKSITGFQTHTTPVLLNVRDRAELATEEYLPLTNVLEGVVILRKNP 891
[Close]
BLAST of mRNA_F-distichus_contig97201.19176.1 vs. uniprot
Match: F0W601_9STRA (Predicted protein putative n=3 Tax=Albugo TaxID=65356 RepID=F0W601_9STRA)

HSP 1 Score: 116 bits (290), Expect = 2.480e-28
Identity = 58/76 (76.32%), Postives = 68/76 (89.47%), Query Frame = 1 
Query:   34 LSQVDSDLKPLPVSVRVGQAVETVGQAGKPKTITGFQTHTTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPE 261
            L  VD DL+PLPVSVRVGQAV+ VGQAG+PK+ITGFQTHTTPVLL V+DRAELAT+E++  TSVLEGVVIL +NP+
Sbjct:  817 LITVDEDLQPLPVSVRVGQAVDIVGQAGRPKSITGFQTHTTPVLLNVKDRAELATDEYLSLTSVLEGVVILKKNPD 892
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97201.19176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K5T2_9PHAE3.080e-3792.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A0G4IJI4_PLABS5.950e-3078.95Uncharacterized protein n=1 Tax=Plasmodiophora bra... [more]
A0A836CK10_9STRA1.510e-2978.9526S proteasome non-ATPase regulatory subunit 2 n=1... [more]
D3B684_POLPP5.240e-2968.1826S proteasome regulatory subunit S2 n=1 Tax=Polys... [more]
A0A6A5ADN9_9STRA6.250e-2972.00RPN1_C domain-containing protein n=2 Tax=Aphanomyc... [more]
A0A7S2NS19_9EUKA1.080e-2876.32Hypothetical protein n=1 Tax=Haptolina brevifila T... [more]
UPI0009E2E7D71.460e-2872.2226S proteasome non-ATPase regulatory subunit 2-lik... [more]
A0A8K1CC17_PYTOL1.820e-2875.00Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A0P1AZB9_PLAHL2.480e-2877.3326s proteasome non-atpase regulatory subunit 2 n=2... [more]
F0W601_9STRA2.480e-2876.32Predicted protein putative n=3 Tax=Albugo TaxID=65... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97201contigF-distichus_contig97201:436..1087 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score119.8
Seed ortholog evalue6.4e-25
Seed eggNOG ortholog42099.EPrPV00000021091
Preferred nameRPN1
KEGG koko:K03028
KEGG Pathwayko03050,ko05169,map03050,map05169
KEGG ModuleM00341
Hectar predicted targeting categoryother localisation
GOsGO:0000502,GO:0001101,GO:0002376,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0005838,GO:0005886,GO:0005911,GO:0006508,GO:0006511,GO:0006807,GO:0006950,GO:0006952,GO:0006955,GO:0006970,GO:0006972,GO:0008150,GO:0008152,GO:0008540,GO:0009056,GO:0009057,GO:0009506,GO:0009628,GO:0009719,GO:0009725,GO:0009751,GO:0009987,GO:0010033,GO:0010498,GO:0014070,GO:0016020,GO:0019538,GO:0019941,GO:0022624,GO:0030054,GO:0030163,GO:0031597,GO:0032182,GO:0032991,GO:0034515,GO:0042221,GO:0042493,GO:0043130,GO:0043161,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044424,GO:0044444,GO:0044445,GO:0044464,GO:0045087,GO:0046677,GO:0050789,GO:0050794,GO:0050896,GO:0051603,GO:0051726,GO:0055044,GO:0065007,GO:0071704,GO:0071944,GO:1901564,GO:1901565,GO:1901575,GO:1901700,GO:1902494,GO:1905368,GO:1905369
EggNOG free text desc.26S proteasome non-ATPase regulatory subunit 2. Source PGD
EggNOG OGs1MG4Q@121069,COG5110@1,KOG2005@2759
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03051
Exons2
Model size261
Cds size261
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931152.1560078-CDS-F-distichus_contig97201:435..5071622931152.1560078-CDS-F-distichus_contig97201:435..507Fucus distichus monoicousCDSF-distichus_contig97201 436..507 -
1690886180.7590232-CDS-F-distichus_contig97201:435..5071690886180.7590232-CDS-F-distichus_contig97201:435..507Fucus distichus monoicousCDSF-distichus_contig97201 436..507 -
1622931152.1730072-CDS-F-distichus_contig97201:898..10871622931152.1730072-CDS-F-distichus_contig97201:898..1087Fucus distichus monoicousCDSF-distichus_contig97201 899..1087 -
1690886180.7728026-CDS-F-distichus_contig97201:898..10871690886180.7728026-CDS-F-distichus_contig97201:898..1087Fucus distichus monoicousCDSF-distichus_contig97201 899..1087 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97201.19176.1prot_F-distichus_contig97201.19176.1Fucus distichus monoicouspolypeptideF-distichus_contig97201 436..1087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97201.19176.1

>prot_F-distichus_contig97201.19176.1 ID=prot_F-distichus_contig97201.19176.1|Name=mRNA_F-distichus_contig97201.19176.1|organism=Fucus distichus monoicous|type=polypeptide|length=87bp
LFKNYIKRIFFLSQVDSDLKPLPVSVRVGQAVETVGQAGKPKTITGFQTH
TTPVLLGVRDRAELATNEWVPSTSVLEGVVILTRNPE
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mRNA from alignment at F-distichus_contig97201:436..1087-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97201.19176.1 ID=mRNA_F-distichus_contig97201.19176.1|Name=mRNA_F-distichus_contig97201.19176.1|organism=Fucus distichus monoicous|type=mRNA|length=652bp|location=Sequence derived from alignment at F-distichus_contig97201:436..1087- (Fucus distichus monoicous)
TTATTCAAAAATTATATAAAACGTATTTTTTTCCTGTCTCAGGTTGACTC
GGATCTGAAGCCATTGCCAGTGAGCGTGCGCGTGGGGCAGGCAGTGGAGA
CGGTGGGACAGGCGGGGAAGCCCAAAACTATCACGGGCTTCCAGACGCAC
ACGACCCCAGTGCTACTGGGTGTGCGAGACCGTGCGGAGGTGATCGAAGG
GTTCATGGAGTTTGTTGCTTGGGTCTGGGGTGTTTTCAAGCGCTTGATCA
TCCCCTCCCCTGGCTTCATGGTCTCGTGGGGGTGACGCTGGAAACGTTGA
TTTTATGCGCTCATTCCGATATATGGACGATGCATTCCAATGTCGTTTCA
TGTGGATGTCAACGGTTGCCGTCTGTCCCCGCCCTTCTCAATACTCTTTT
TGTGTCACCATCATACTTATTTGGGTTATGACGCTTAAAACAATAACATC
GATTTTTTACTGTACTAATCTATGAAGGACCAGATACGTTGTATTTAGTT
CTAATGTTTCGTCAATCCCTTGTGTGATTTTACGCCCACGCACCCAACAC
CTCGATTCTCAAACTACGATACAAAAAAAGTTGGCGACGAACGAGTGGGT
GCCCTCGACGAGCGTCCTCGAGGGCGTGGTTATCCTCACGCGGAACCCAG
AG
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Coding sequence (CDS) from alignment at F-distichus_contig97201:436..1087-

>mRNA_F-distichus_contig97201.19176.1 ID=mRNA_F-distichus_contig97201.19176.1|Name=mRNA_F-distichus_contig97201.19176.1|organism=Fucus distichus monoicous|type=CDS|length=522bp|location=Sequence derived from alignment at F-distichus_contig97201:436..1087- (Fucus distichus monoicous)
TTATTCAAAAATTATATAAAACGTATTTTTTTCCTGTCTCAGGTTGACTC
GGATCTGAAGCCATTGCCAGTGAGCGTGCGCGTGGGGCAGGCAGTGGAGA
CGGTGGGACAGGCGGGGAAGCCCAAAACTATCACGGGCTTCCAGACGCAC
ACGACCCCAGTGCTACTGGGTGTGCGAGACCGTGCGGAGTTATTCAAAAA
TTATATAAAACGTATTTTTTTCCTGTCTCAGGTTGACTCGGATCTGAAGC
CATTGCCAGTGAGCGTGCGCGTGGGGCAGGCAGTGGAGACGGTGGGACAG
GCGGGGAAGCCCAAAACTATCACGGGCTTCCAGACGCACACGACCCCAGT
GCTACTGGGTGTGCGAGACCGTGCGGAGTTGGCGACGAACGAGTGGGTGC
CCTCGACGAGCGTCCTCGAGGGCGTGGTTATCCTCACGCGGAACCCAGAG
TTGGCGACGAACGAGTGGGTGCCCTCGACGAGCGTCCTCGAGGGCGTGGT
TATCCTCACGCGGAACCCAGAG
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