mRNA_F-distichus_contig97154.19171.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97154.19171.1
Unique NamemRNA_F-distichus_contig97154.19171.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97154.19171.1 vs. uniprot
Match: A0A5S6QG42_TRIMR (Uncharacterized protein n=5 Tax=Trichuris muris TaxID=70415 RepID=A0A5S6QG42_TRIMR)

HSP 1 Score: 53.5 bits (127), Expect = 4.420e-6
Identity = 31/94 (32.98%), Postives = 45/94 (47.87%), Query Frame = 1 
Query:    7 GAARSDKKEGWESDFGATFHMSHTRAGMFDYKKASPG-TNVEIADGNILPVDGFGRIEVDLDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKAVE 285
            GA  +     W  D GAT HMS        +K  SP  T V+IADG++LP+   G +   L +   T K     +  +VPG+   ++S  + VE
Sbjct:  273 GAVSNGFAGAWVIDSGATHHMSPNEEYFTKWKAKSPANTQVQIADGSVLPIANAGTVRAKLTRNKGTVKEFSAKNTLFVPGIRTGILSVPQMVE 366
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BLAST of mRNA_F-distichus_contig97154.19171.1 vs. uniprot
Match: A0A4C1TCT1_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1TCT1_EUMVA)

HSP 1 Score: 52.4 bits (124), Expect = 1.060e-5
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:   37 WESDFGATFHMSHTRAGMFDYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKM-VRMDDVAYVPGLSRNLVSTVKA 279
            W  D GAT H++ TR    +Y+  +   +++ A   IL  +G G IE  L +  +  ++ +R++DV YVPG+SRNL S + A
Sbjct:  296 WWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEF-LSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 376
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BLAST of mRNA_F-distichus_contig97154.19171.1 vs. uniprot
Match: A0A4C1SBF3_EUMVA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Eumeta variegata TaxID=151549 RepID=A0A4C1SBF3_EUMVA)

HSP 1 Score: 52.4 bits (124), Expect = 1.130e-5
Identity = 30/82 (36.59%), Postives = 48/82 (58.54%), Query Frame = 1 
Query:   37 WESDFGATFHMSHTRAGMFDYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKM-VRMDDVAYVPGLSRNLVSTVKA 279
            W  D GAT H++ TR    +Y+  +   +++ A   IL  +G G IE  L +  +  ++ +R++DV YVPG+SRNL S + A
Sbjct:  269 WWVDNGATKHVTRTRKYFVEYESFNDQKSIQAAGKEILNAEGKGTIEF-LSRINQNLEIQIRLEDVWYVPGISRNLFSVLAA 349
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BLAST of mRNA_F-distichus_contig97154.19171.1 vs. uniprot
Match: A0A0P1ACE6_PLAHL (Uncharacterized protein n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ACE6_PLAHL)

HSP 1 Score: 49.7 bits (117), Expect = 9.040e-5
Identity = 28/95 (29.47%), Postives = 50/95 (52.63%), Query Frame = 1 
Query:    1 MVGAARSDKKEGWESDFGATFHMSHTRAGMFDYKKASPGTNVEIADGNILPVDGFGRIEVDLDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKAVE 285
            +   A +  +  W  D G T H++H  +  F    AS G+ + +   N +P++G G+IE+++     T +M+ + DV Y P L  +L+S   AV+
Sbjct:  217 LTAQATASPEPTWTIDSGCTRHVTH-ESQWFSTISASNGS-ITVGVKNQIPIEGIGKIELEVTDSKGTQRMLTLHDVLYAPELKFSLLSVPAAVK 309
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97154.19171.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A5S6QG42_TRIMR4.420e-632.98Uncharacterized protein n=5 Tax=Trichuris muris Ta... [more]
A0A4C1TCT1_EUMVA1.060e-536.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A4C1SBF3_EUMVA1.130e-536.59Retrovirus-related Pol polyprotein from transposon... [more]
A0A0P1ACE6_PLAHL9.040e-529.47Uncharacterized protein n=1 Tax=Plasmopara halsted... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97154contigF-distichus_contig97154:1522..1818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score62.0
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog164328.Phyra85925
Hectar predicted targeting categoryother localisation
EggNOG free text desc.gag-polypeptide of LTR copia-type
EggNOG OGs3QI8W@4776,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Exons1
Model size297
Cds size297
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931151.1658475-CDS-F-distichus_contig97154:1521..18181622931151.1658475-CDS-F-distichus_contig97154:1521..1818Fucus distichus monoicousCDSF-distichus_contig97154 1522..1818 +
1690886180.2882166-CDS-F-distichus_contig97154:1521..18181690886180.2882166-CDS-F-distichus_contig97154:1521..1818Fucus distichus monoicousCDSF-distichus_contig97154 1522..1818 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97154.19171.1prot_F-distichus_contig97154.19171.1Fucus distichus monoicouspolypeptideF-distichus_contig97154 1522..1818 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97154.19171.1

>prot_F-distichus_contig97154.19171.1 ID=prot_F-distichus_contig97154.19171.1|Name=mRNA_F-distichus_contig97154.19171.1|organism=Fucus distichus monoicous|type=polypeptide|length=99bp
MVGAARSDKKEGWESDFGATFHMSHTRAGMFDYKKASPGTNVEIADGNIL
PVDGFGRIEVDLDQPGRTTKMVRMDDVAYVPGLSRNLVSTVKAVEQWGK
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mRNA from alignment at F-distichus_contig97154:1522..1818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97154.19171.1 ID=mRNA_F-distichus_contig97154.19171.1|Name=mRNA_F-distichus_contig97154.19171.1|organism=Fucus distichus monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at F-distichus_contig97154:1522..1818+ (Fucus distichus monoicous)
ATGGTGGGAGCCGCCCGTAGCGATAAGAAGGAAGGATGGGAATCTGATTT
CGGCGCCACATTTCACATGTCGCACACCCGCGCCGGAATGTTTGATTATA
AGAAGGCGTCGCCAGGAACGAACGTTGAGATCGCCGACGGTAATATTCTA
CCGGTGGACGGCTTCGGGAGAATTGAGGTGGATCTGGACCAACCGGGGCG
TACAACTAAGATGGTGAGGATGGACGATGTCGCGTACGTGCCGGGACTCT
CTCGAAACCTGGTGTCTACTGTCAAAGCAGTGGAGCAATGGGGGAAA
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Coding sequence (CDS) from alignment at F-distichus_contig97154:1522..1818+

>mRNA_F-distichus_contig97154.19171.1 ID=mRNA_F-distichus_contig97154.19171.1|Name=mRNA_F-distichus_contig97154.19171.1|organism=Fucus distichus monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at F-distichus_contig97154:1522..1818+ (Fucus distichus monoicous)
ATGGTGGGAGCCGCCCGTAGCGATAAGAAGGAAGGATGGGAATCTGATTT
CGGCGCCACATTTCACATGTCGCACACCCGCGCCGGAATGTTTGATTATA
AGAAGGCGTCGCCAGGAACGAACGTTGAGATCGCCGACGGTAATATTCTA
CCGGTGGACGGCTTCGGGAGAATTGAGGTGGATCTGGACCAACCGGGGCG
TACAACTAAGATGGTGAGGATGGACGATGTCGCGTACGTGCCGGGACTCT
CTCGAAACCTGGTGTCTACTGTCAAAGCAGTGGAGCAATGGGGGAAAATG
GTGGGAGCCGCCCGTAGCGATAAGAAGGAAGGATGGGAATCTGATTTCGG
CGCCACATTTCACATGTCGCACACCCGCGCCGGAATGTTTGATTATAAGA
AGGCGTCGCCAGGAACGAACGTTGAGATCGCCGACGGTAATATTCTACCG
GTGGACGGCTTCGGGAGAATTGAGGTGGATCTGGACCAACCGGGGCGTAC
AACTAAGATGGTGAGGATGGACGATGTCGCGTACGTGCCGGGACTCTCTC
GAAACCTGGTGTCTACTGTCAAAGCAGTGGAGCAATGGGGGAAA
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