mRNA_F-distichus_contig97137.19168.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97137.19168.1
Unique NamemRNA_F-distichus_contig97137.19168.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97137.19168.1 vs. uniprot
Match: D7FM44_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM44_ECTSI)

HSP 1 Score: 75.1 bits (183), Expect = 1.900e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   61 ASAGQTIDIWWVAKDGGLLLLVPYLLKLHKLWKRC 165
            A+AGQTIDIWWVAKDGGLLLLVPYLLKLH LWKRC
Sbjct:  530 ATAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 564
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BLAST of mRNA_F-distichus_contig97137.19168.1 vs. uniprot
Match: A0A6H5L1Z6_9PHAE (Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1Z6_9PHAE)

HSP 1 Score: 75.1 bits (183), Expect = 1.900e-14
Identity = 33/35 (94.29%), Postives = 34/35 (97.14%), Query Frame = 1 
Query:   61 ASAGQTIDIWWVAKDGGLLLLVPYLLKLHKLWKRC 165
            A+AGQTIDIWWVAKDGGLLLLVPYLLKLH LWKRC
Sbjct:  724 ATAGQTIDIWWVAKDGGLLLLVPYLLKLHVLWKRC 758
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BLAST of mRNA_F-distichus_contig97137.19168.1 vs. uniprot
Match: A0A3Q1NIV4_BOVIN (Solute carrier family 12 member 7 n=44 Tax=Laurasiatheria TaxID=314145 RepID=A0A3Q1NIV4_BOVIN)

HSP 1 Score: 59.3 bits (142), Expect = 6.950e-9
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 AAAVATLPRTRVDLRRCVMQASAGQTIDIWWVAKDGGLLLLVPYLLKLHKLWKRC 165
            AA  A L    VDL     Q  +G  ID+WW+  DGGLL+L+P+LL+ HK+W+RC
Sbjct:  633 AAQQALLVAKNVDLFPHNQQRLSGGHIDVWWIVHDGGLLMLLPFLLRQHKVWRRC 687
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BLAST of mRNA_F-distichus_contig97137.19168.1 vs. uniprot
Match: A0A835Z2U9_9STRA (Amino acid permease-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2U9_9STRA)

HSP 1 Score: 59.3 bits (142), Expect = 6.960e-9
Identity = 24/30 (80.00%), Postives = 25/30 (83.33%), Query Frame = 1 
Query:   76 TIDIWWVAKDGGLLLLVPYLLKLHKLWKRC 165
            T+DIWWVA DGGLLLLVPYLL LH  W RC
Sbjct:  706 TVDIWWVAHDGGLLLLVPYLLSLHPTWSRC 735
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BLAST of mRNA_F-distichus_contig97137.19168.1 vs. uniprot
Match: A0A6P5DKI2_BOSIN (solute carrier family 12 member 7 n=1 Tax=Bos indicus TaxID=9915 RepID=A0A6P5DKI2_BOSIN)

HSP 1 Score: 59.3 bits (142), Expect = 6.960e-9
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 AAAVATLPRTRVDLRRCVMQASAGQTIDIWWVAKDGGLLLLVPYLLKLHKLWKRC 165
            AA  A L    VDL     Q  +G  ID+WW+  DGGLL+L+P+LL+ HK+W+RC
Sbjct:  821 AAQQALLVAKNVDLFPHNQQRLSGGHIDVWWIVHDGGLLMLLPFLLRQHKVWRRC 875
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BLAST of mRNA_F-distichus_contig97137.19168.1 vs. uniprot
Match: A0A4W2H2L0_BOBOX (Solute carrier family 12 member 7 n=6 Tax=Pecora TaxID=35500 RepID=A0A4W2H2L0_BOBOX)

HSP 1 Score: 59.3 bits (142), Expect = 6.970e-9
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 AAAVATLPRTRVDLRRCVMQASAGQTIDIWWVAKDGGLLLLVPYLLKLHKLWKRC 165
            AA  A L    VDL     Q  +G  ID+WW+  DGGLL+L+P+LL+ HK+W+RC
Sbjct:  820 AAQQALLVAKNVDLFPHNQQRLSGGHIDVWWIVHDGGLLMLLPFLLRQHKVWRRC 874
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BLAST of mRNA_F-distichus_contig97137.19168.1 vs. uniprot
Match: A0A6P3IWD1_BISBI (solute carrier family 12 member 7 n=2 Tax=Pecora TaxID=35500 RepID=A0A6P3IWD1_BISBI)

HSP 1 Score: 59.3 bits (142), Expect = 6.980e-9
Identity = 27/55 (49.09%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 AAAVATLPRTRVDLRRCVMQASAGQTIDIWWVAKDGGLLLLVPYLLKLHKLWKRC 165
            AA  A L    VDL     Q  +G  ID+WW+  DGGLL+L+P+LL+ HK+W+RC
Sbjct: 1344 AAQQALLVAKNVDLFPHNQQRLSGGHIDVWWIVHDGGLLMLLPFLLRQHKVWRRC 1398
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BLAST of mRNA_F-distichus_contig97137.19168.1 vs. uniprot
Match: A0A401P4Y5_SCYTO (Uncharacterized protein n=14 Tax=Galeoidea TaxID=119195 RepID=A0A401P4Y5_SCYTO)

HSP 1 Score: 58.9 bits (141), Expect = 9.520e-9
Identity = 26/55 (47.27%), Postives = 35/55 (63.64%), Query Frame = 1 
Query:    1 AAAVATLPRTRVDLRRCVMQASAGQTIDIWWVAKDGGLLLLVPYLLKLHKLWKRC 165
            AA  A L    +D      +  AG TID+WW+  DGGLL+L+P+LL  HK+WK+C
Sbjct:  815 AAHQALLVTKNIDSFPTNQERFAGGTIDVWWIVHDGGLLMLLPFLLSQHKVWKKC 869
[Close]
BLAST of mRNA_F-distichus_contig97137.19168.1 vs. uniprot
Match: A0A2R5L0W1_9CRUS (Solute carrier family 12 member 6 (Fragment) n=1 Tax=Hirondellea gigas TaxID=1518452 RepID=A0A2R5L0W1_9CRUS)

HSP 1 Score: 55.8 bits (133), Expect = 1.210e-8
Identity = 20/30 (66.67%), Postives = 26/30 (86.67%), Query Frame = 1 
Query:   76 TIDIWWVAKDGGLLLLVPYLLKLHKLWKRC 165
            TIDIWW+  DGGLL+L+P+LL+ HK+WK C
Sbjct:   10 TIDIWWIVHDGGLLMLLPFLLRQHKVWKNC 39
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BLAST of mRNA_F-distichus_contig97137.19168.1 vs. uniprot
Match: A0A8J5K031_HOMAM (Solute carrier family 12 member 6-like 2 n=1 Tax=Homarus americanus TaxID=6706 RepID=A0A8J5K031_HOMAM)

HSP 1 Score: 58.5 bits (140), Expect = 1.300e-8
Identity = 23/39 (58.97%), Postives = 30/39 (76.92%), Query Frame = 1 
Query:   49 CVMQASAGQTIDIWWVAKDGGLLLLVPYLLKLHKLWKRC 165
            C+ Q S   TIDIWW+  DGGLL+L+P+LL+ HK+WK C
Sbjct:  536 CIWQVSG--TIDIWWIVHDGGLLMLLPFLLRQHKVWKNC 572
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97137.19168.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FM44_ECTSI1.900e-1494.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1Z6_9PHAE1.900e-1494.29Ccc protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 Ta... [more]
A0A3Q1NIV4_BOVIN6.950e-949.09Solute carrier family 12 member 7 n=44 Tax=Laurasi... [more]
A0A835Z2U9_9STRA6.960e-980.00Amino acid permease-domain-containing protein n=1 ... [more]
A0A6P5DKI2_BOSIN6.960e-949.09solute carrier family 12 member 7 n=1 Tax=Bos indi... [more]
A0A4W2H2L0_BOBOX6.970e-949.09Solute carrier family 12 member 7 n=6 Tax=Pecora T... [more]
A0A6P3IWD1_BISBI6.980e-949.09solute carrier family 12 member 7 n=2 Tax=Pecora T... [more]
A0A401P4Y5_SCYTO9.520e-947.27Uncharacterized protein n=14 Tax=Galeoidea TaxID=1... [more]
A0A2R5L0W1_9CRUS1.210e-866.67Solute carrier family 12 member 6 (Fragment) n=1 T... [more]
A0A8J5K031_HOMAM1.300e-858.97Solute carrier family 12 member 6-like 2 n=1 Tax=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97137contigF-distichus_contig97137:2008..2172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score74.3
Seed ortholog evalue1.9e-11
Seed eggNOG ortholog2880.D7FM44
KEGG koko:K14427
KEGG TC2.A.30.5
Hectar predicted targeting categoryno signal peptide or anchor
EggNOG free text desc.potassium:chloride symporter activity
EggNOG OGsCOG0531@1,KOG2082@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko02000
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931150.9393444-CDS-F-distichus_contig97137:2007..21721622931150.9393444-CDS-F-distichus_contig97137:2007..2172Fucus distichus monoicousCDSF-distichus_contig97137 2008..2172 -
1690886180.1877818-CDS-F-distichus_contig97137:2007..21721690886180.1877818-CDS-F-distichus_contig97137:2007..2172Fucus distichus monoicousCDSF-distichus_contig97137 2008..2172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97137.19168.1prot_F-distichus_contig97137.19168.1Fucus distichus monoicouspolypeptideF-distichus_contig97137 2008..2172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97137.19168.1

>prot_F-distichus_contig97137.19168.1 ID=prot_F-distichus_contig97137.19168.1|Name=mRNA_F-distichus_contig97137.19168.1|organism=Fucus distichus monoicous|type=polypeptide|length=55bp
AAAVATLPRTRVDLRRCVMQASAGQTIDIWWVAKDGGLLLLVPYLLKLHK
LWKRC
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mRNA from alignment at F-distichus_contig97137:2008..2172-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97137.19168.1 ID=mRNA_F-distichus_contig97137.19168.1|Name=mRNA_F-distichus_contig97137.19168.1|organism=Fucus distichus monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at F-distichus_contig97137:2008..2172- (Fucus distichus monoicous)
GCCGCCGCTGTCGCTACCCTCCCTCGCACGCGCGTCGACCTGCGCCGCTG
TGTGATGCAGGCGTCGGCCGGACAGACGATCGATATCTGGTGGGTCGCCA
AGGACGGCGGGCTACTGCTCCTCGTGCCTTATCTCTTGAAGCTTCACAAG
CTGTGGAAGAGGTGC
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Coding sequence (CDS) from alignment at F-distichus_contig97137:2008..2172-

>mRNA_F-distichus_contig97137.19168.1 ID=mRNA_F-distichus_contig97137.19168.1|Name=mRNA_F-distichus_contig97137.19168.1|organism=Fucus distichus monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at F-distichus_contig97137:2008..2172- (Fucus distichus monoicous)
GCCGCCGCTGTCGCTACCCTCCCTCGCACGCGCGTCGACCTGCGCCGCTG
TGTGATGCAGGCGTCGGCCGGACAGACGATCGATATCTGGTGGGTCGCCA
AGGACGGCGGGCTACTGCTCCTCGTGCCTTATCTCTTGAAGCTTCACAAG
CTGTGGAAGAGGTGCGCCGCCGCTGTCGCTACCCTCCCTCGCACGCGCGT
CGACCTGCGCCGCTGTGTGATGCAGGCGTCGGCCGGACAGACGATCGATA
TCTGGTGGGTCGCCAAGGACGGCGGGCTACTGCTCCTCGTGCCTTATCTC
TTGAAGCTTCACAAGCTGTGGAAGAGGTGC
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