mRNA_F-distichus_contig97134.19167.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97134.19167.1
Unique NamemRNA_F-distichus_contig97134.19167.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97134.19167.1 vs. uniprot
Match: A0A6P0N5L4_9CYAN (Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 TaxID=2607842 RepID=A0A6P0N5L4_9CYAN)

HSP 1 Score: 110 bits (274), Expect = 5.530e-26
Identity = 53/96 (55.21%), Postives = 71/96 (73.96%), Query Frame = 1 
Query:    1 MALTATLGLEEGCTILSFDGANAFNSTYRHRFLPALAEIVPSVVPYVSNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGRLCYSAGSLKILK 288
            +A  A L  ++G  +L++D  NAFNS  R   LPALA+++P ++PY +N+YAREPPKLL+  D G + V+ SA GVQQGCNLG LCYSAG LK+L+
Sbjct: 1277 LAARAFLAHQKGQCLLAYDARNAFNSMKRSAILPALADLIPPMLPYATNIYAREPPKLLYKTDSGMA-VIPSATGVQQGCNLGPLCYSAGLLKLLR 1371
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BLAST of mRNA_F-distichus_contig97134.19167.1 vs. uniprot
Match: A0A6H5K1H0_9PHAE (Reverse transcriptase domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H0_9PHAE)

HSP 1 Score: 100 bits (248), Expect = 1.770e-22
Identity = 51/96 (53.12%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 MALTATLGLEEGCTILSFDGANAFNSTYRHRFLPALAEIVPSVVPYVSNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGRLCYSAGSLKILK 288
            +A TA L  ++G TILSFDG NA+NS  R   LPA+A + P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+K
Sbjct:   89 VASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATLTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMK 184
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BLAST of mRNA_F-distichus_contig97134.19167.1 vs. uniprot
Match: A0A6H5KQ62_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQ62_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 3.520e-22
Identity = 51/96 (53.12%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    1 MALTATLGLEEGCTILSFDGANAFNSTYRHRFLPALAEIVPSVVPYVSNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGRLCYSAGSLKILK 288
            +A TA L  ++G TILSFDG NA+NS  R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+K
Sbjct:  241 VASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMK 336
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BLAST of mRNA_F-distichus_contig97134.19167.1 vs. uniprot
Match: A0A6H5KGJ4_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KGJ4_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 7.970e-22
Identity = 51/96 (53.12%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    1 MALTATLGLEEGCTILSFDGANAFNSTYRHRFLPALAEIVPSVVPYVSNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGRLCYSAGSLKILK 288
            +A TA L  ++G TILSFDG NA+NS  R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+K
Sbjct:  241 VASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMK 336
[Close]
BLAST of mRNA_F-distichus_contig97134.19167.1 vs. uniprot
Match: A0A6H5JCM0_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCM0_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 8.250e-22
Identity = 51/96 (53.12%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    1 MALTATLGLEEGCTILSFDGANAFNSTYRHRFLPALAEIVPSVVPYVSNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGRLCYSAGSLKILK 288
            +A TA L  ++G TILSFDG NA+NS  R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+K
Sbjct:  241 VASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMK 336
[Close]
BLAST of mRNA_F-distichus_contig97134.19167.1 vs. uniprot
Match: A0A6H5LN63_9PHAE (Reverse transcriptase domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LN63_9PHAE)

HSP 1 Score: 98.2 bits (243), Expect = 8.340e-22
Identity = 51/96 (53.12%), Postives = 62/96 (64.58%), Query Frame = 1 
Query:    1 MALTATLGLEEGCTILSFDGANAFNSTYRHRFLPALAEIVPSVVPYVSNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGRLCYSAGSLKILK 288
            +A TA L  ++G TILSFDG NA+NS  R   LPA+A   P +V Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+K
Sbjct:  241 VASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLVKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMK 336
[Close]
BLAST of mRNA_F-distichus_contig97134.19167.1 vs. uniprot
Match: A0A6H5KSY9_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSY9_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 2.330e-21
Identity = 50/96 (52.08%), Postives = 61/96 (63.54%), Query Frame = 1 
Query:    1 MALTATLGLEEGCTILSFDGANAFNSTYRHRFLPALAEIVPSVVPYVSNLYAREPPKLLFALDGGGSEVVESARGVQQGCNLGRLCYSAGSLKILK 288
            +A TA L  ++G TILSFDG NA+NS  R   LPA+A   P +  Y  N+YAR   KLLF ++ G  EVV S RGVQQGCNLG   +  G L I+K
Sbjct:   89 VASTAALSHQQGSTILSFDGKNAYNSMRRSSILPAVATHTPHLAKYFGNIYARTKAKLLFKMEDGSIEVVLSQRGVQQGCNLGGFGFCVGLLDIMK 184
[Close]
BLAST of mRNA_F-distichus_contig97134.19167.1 vs. uniprot
Match: A0A6H5L3H3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L3H3_9PHAE)

HSP 1 Score: 74.7 bits (182), Expect = 1.120e-14
Identity = 40/78 (51.28%), Postives = 49/78 (62.82%), Query Frame = 1 
Query:    1 MALTATLGLEEGCTILSFDGANAFNSTYRHRFLPALAEIVPSVVPYVSNLYAREPPKLLFALDGGGSEVVESARGVQQ 234
            +A TA L  ++G TILSFDG NA+NS  R   L A+A   P +V Y  NLYAR   KLLF ++ G  E+V S R VQQ
Sbjct:   89 VASTAALSHQQGSTILSFDGRNAYNSILRSSILTAVATHTPHLVKYFGNLYARIKAKLLFKMEDGSIEMVRSQREVQQ 166
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97134.19167.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6P0N5L4_9CYAN5.530e-2655.21Patatin-like protein n=1 Tax=Moorena sp. SIO3C2 Ta... [more]
A0A6H5K1H0_9PHAE1.770e-2253.13Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KQ62_9PHAE3.520e-2253.13Reverse transcriptase domain-containing protein (F... [more]
A0A6H5KGJ4_9PHAE7.970e-2253.13Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCM0_9PHAE8.250e-2253.13Reverse transcriptase domain-containing protein (F... [more]
A0A6H5LN63_9PHAE8.340e-2253.13Reverse transcriptase domain-containing protein n=... [more]
A0A6H5KSY9_9PHAE2.330e-2152.08Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L3H3_9PHAE1.120e-1451.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97134contigF-distichus_contig97134:545..835 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size291
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931150.8936253-CDS-F-distichus_contig97134:544..8351622931150.8936253-CDS-F-distichus_contig97134:544..835Fucus distichus monoicousCDSF-distichus_contig97134 545..835 +
1690886180.1757443-CDS-F-distichus_contig97134:544..8351690886180.1757443-CDS-F-distichus_contig97134:544..835Fucus distichus monoicousCDSF-distichus_contig97134 545..835 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97134.19167.1prot_F-distichus_contig97134.19167.1Fucus distichus monoicouspolypeptideF-distichus_contig97134 545..835 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97134.19167.1

>prot_F-distichus_contig97134.19167.1 ID=prot_F-distichus_contig97134.19167.1|Name=mRNA_F-distichus_contig97134.19167.1|organism=Fucus distichus monoicous|type=polypeptide|length=97bp
MALTATLGLEEGCTILSFDGANAFNSTYRHRFLPALAEIVPSVVPYVSNL
YAREPPKLLFALDGGGSEVVESARGVQQGCNLGRLCYSAGSLKILK*
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mRNA from alignment at F-distichus_contig97134:545..835+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97134.19167.1 ID=mRNA_F-distichus_contig97134.19167.1|Name=mRNA_F-distichus_contig97134.19167.1|organism=Fucus distichus monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at F-distichus_contig97134:545..835+ (Fucus distichus monoicous)
ATGGCGCTCACTGCAACGCTGGGTTTAGAAGAGGGTTGTACCATTCTCTC
ATTCGACGGAGCAAACGCCTTCAACAGTACATACCGCCACAGGTTCCTGC
CCGCGCTAGCGGAAATCGTCCCCTCAGTGGTCCCCTACGTATCAAACCTG
TACGCACGGGAACCCCCAAAACTCCTGTTTGCACTAGACGGTGGAGGTTC
GGAAGTGGTCGAGTCAGCACGGGGTGTACAGCAAGGATGTAATCTAGGTC
GACTTTGCTACAGCGCAGGCTCACTGAAGATCCTAAAATAA
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Coding sequence (CDS) from alignment at F-distichus_contig97134:545..835+

>mRNA_F-distichus_contig97134.19167.1 ID=mRNA_F-distichus_contig97134.19167.1|Name=mRNA_F-distichus_contig97134.19167.1|organism=Fucus distichus monoicous|type=CDS|length=582bp|location=Sequence derived from alignment at F-distichus_contig97134:545..835+ (Fucus distichus monoicous)
ATGGCGCTCACTGCAACGCTGGGTTTAGAAGAGGGTTGTACCATTCTCTC
ATTCGACGGAGCAAACGCCTTCAACAGTACATACCGCCACAGGTTCCTGC
CCGCGCTAGCGGAAATCGTCCCCTCAGTGGTCCCCTACGTATCAAACCTG
TACGCACGGGAACCCCCAAAACTCCTGTTTGCACTAGACGGTGGAGGTTC
GGAAGTGGTCGAGTCAGCACGGGGTGTACAGCAAGGATGTAATCTAGGTC
GACTTTGCTACAGCGCAGGCTCACTGAAGATCCTAAAATAAATGGCGCTC
ACTGCAACGCTGGGTTTAGAAGAGGGTTGTACCATTCTCTCATTCGACGG
AGCAAACGCCTTCAACAGTACATACCGCCACAGGTTCCTGCCCGCGCTAG
CGGAAATCGTCCCCTCAGTGGTCCCCTACGTATCAAACCTGTACGCACGG
GAACCCCCAAAACTCCTGTTTGCACTAGACGGTGGAGGTTCGGAAGTGGT
CGAGTCAGCACGGGGTGTACAGCAAGGATGTAATCTAGGTCGACTTTGCT
ACAGCGCAGGCTCACTGAAGATCCTAAAATAA
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