mRNA_F-distichus_contig9712.19164.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9712.19164.1
Unique NamemRNA_F-distichus_contig9712.19164.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig9712.19164.1 vs. uniprot
Match: D7FLZ3_ECTSI (GTP_CH_N domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLZ3_ECTSI)

HSP 1 Score: 342 bits (878), Expect = 7.740e-116
Identity = 158/188 (84.04%), Postives = 178/188 (94.68%), Query Frame = 1
Query:    1 LQWGEEDPEKRGPIIATTRQPTQRNAIGAHSGSYCLYRALAVACGKLDPNYLPKLDATRPVCEIGPFESWSDASKIGTMDPWGHVVTDVYKPWLRKGYDIRPTIAVTEAHIDLPEVREAVRVGRLKPDGKILTEDGQSFITKCAVEPVWYLPEIARRFGVDEVKLRETLFKETNMMYPELVTREDLKV 564
            L+WGEEDPE+RGP++ATTR PTQRNAIGAHSGSYC+YRALAVA GKL+ NY+PKL +TRPVCEIGPF SWSD SKIGTMDP GH+VTDV+ PWLRKGYD+RPTIAVT+AHIDLPEVREAVR+GRL PDGK+L+++GQSFITKCAVEPVW+LPEIARRFGV+E +LRETLFKETNMMYPELVTREDLKV
Sbjct:   87 LKWGEEDPEQRGPVMATTRHPTQRNAIGAHSGSYCVYRALAVAAGKLNTNYMPKLGSTRPVCEIGPFASWSDPSKIGTMDPKGHLVTDVFDPWLRKGYDVRPTIAVTKAHIDLPEVREAVRLGRLVPDGKVLSKEGQSFITKCAVEPVWHLPEIARRFGVNEAQLRETLFKETNMMYPELVTREDLKV 274          
BLAST of mRNA_F-distichus_contig9712.19164.1 vs. uniprot
Match: A0A835YXC9_9STRA (GTP cyclohydrolase N terminal-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXC9_9STRA)

HSP 1 Score: 315 bits (806), Expect = 3.730e-103
Identity = 144/188 (76.60%), Postives = 166/188 (88.30%), Query Frame = 1
Query:    1 LQWGEEDPEKRGPIIATTRQPTQRNAIGAHSGSYCLYRALAVACGKLDPNYLPKLDATRPVCEIGPFESWSDASKIGTMDPWGHVVTDVYKPWLRKGYDIRPTIAVTEAHIDLPEVREAVRVGRLKPDGKILTEDGQSFITKCAVEPVWYLPEIARRFGVDEVKLRETLFKETNMMYPELVTREDLKV 564
            L+W EEDPE RGP++ATT+ P QRNAIGAHSGSYC+Y+ALAVACGKLDPNYLPKL  TRPV  IGPF +W D +KI TMDPWGH+VTDV+  ++RKGYD+RPTIAVT+AHI+LPEV+EA+RVGRLKPDGKIL  +GQ+F++K AVEPVWYLPEIARRFG  E+ LRETLFKETNMMYPELVTR DL V
Sbjct:   55 LKWEEEDPELRGPVVATTQHPMQRNAIGAHSGSYCIYKALAVACGKLDPNYLPKLHMTRPVFNIGPFPTWHDRTKIATMDPWGHMVTDVFGAYIRKGYDVRPTIAVTKAHIELPEVKEALRVGRLKPDGKILNAEGQAFVSKAAVEPVWYLPEIARRFGCTELALRETLFKETNMMYPELVTRPDLHV 242          
BLAST of mRNA_F-distichus_contig9712.19164.1 vs. uniprot
Match: A0A6V1R1S8_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1R1S8_HETAK)

HSP 1 Score: 276 bits (707), Expect = 4.490e-89
Identity = 131/188 (69.68%), Postives = 151/188 (80.32%), Query Frame = 1
Query:    1 LQWGEEDPEKRGPIIATTRQPTQRNAIGAHSGSYCLYRALAVACGKLDPNYLPKLDATRPVCEIGPFESWSDASKIGTMDPWGHVVTDVYKPWLRKGYDIRPTIAVTEAHIDLPEVREAVRVGRLKPDGKILTEDGQSFITKCAVEPVWYLPEIARRFGVDEVKLRETLFKETNMMYPELVTREDLKV 564
            L+WGE DPE+RGP+IATT+   QRNAIGAHSGSYC+Y ALAVA GKLDP Y P    T PV  IGP+ SW+D SKI ++DP+GH+V   +  +LRKGYDIRPTIAVT+AHIDLPEV+EA+RVGRL  DG IL E GQ+FI+K A+EPVWYLPEIARRFG  E  LRE LF+ TNMMYPELVTR DL V
Sbjct:   20 LKWGEADPERRGPVIATTKHAAQRNAIGAHSGSYCIYMALAVAAGKLDPKYKPNFKDTVPVVNIGPYPSWNDPSKIASLDPFGHLVATEFDTYLRKGYDIRPTIAVTKAHIDLPEVQEALRVGRLTADGAILNEKGQTFISKAAIEPVWYLPEIARRFGCSEDYLRECLFRHTNMMYPELVTRPDLGV 207          
BLAST of mRNA_F-distichus_contig9712.19164.1 vs. uniprot
Match: A0A7S1U4W9_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U4W9_9STRA)

HSP 1 Score: 271 bits (694), Expect = 7.840e-87
Identity = 126/188 (67.02%), Postives = 148/188 (78.72%), Query Frame = 1
Query:    1 LQWGEEDPEKRGPIIATTRQPTQRNAIGAHSGSYCLYRALAVACGKLDPNYLPKLDATRPVCEIGPFESWSDASKIGTMDPWGHVVTDVYKPWLRKGYDIRPTIAVTEAHIDLPEVREAVRVGRLKPDGKILTEDGQSFITKCAVEPVWYLPEIARRFGVDEVKLRETLFKETNMMYPELVTREDLKV 564
            L WGEEDP+ RGP+IAT+     RNAIGAHSGSYC+YRALAVA  KLDP+Y+P L  T PV  IGPF SWSD  K+  MDP+GH+  + +  +LRKGYDIRPTIAVT+AHIDLPE +EA+R GR+ PDG+IL   GQS ITK A+EPVWYLPE+ARRFG  E  LR  LF+ETNMMYPEL+TR D+KV
Sbjct:   51 LNWGEEDPDNRGPVIATSVNLRNRNAIGAHSGSYCVYRALAVASNKLDPSYVPDLTNTDPVHSIGPFPSWSDVRKMAVMDPYGHLTVEAFGTYLRKGYDIRPTIAVTKAHIDLPEFKEAIRAGRIVPDGEILKPTGQSIITKAAIEPVWYLPEVARRFGCSEQDLRLALFRETNMMYPELITRTDMKV 238          
BLAST of mRNA_F-distichus_contig9712.19164.1 vs. uniprot
Match: A0A7S2JIP4_9DINO (Hypothetical protein n=2 Tax=Brandtodinium nutricula TaxID=1333877 RepID=A0A7S2JIP4_9DINO)

HSP 1 Score: 272 bits (696), Expect = 7.650e-86
Identity = 123/188 (65.43%), Postives = 150/188 (79.79%), Query Frame = 1
Query:    1 LQWGEEDPEKRGPIIATTRQPTQRNAIGAHSGSYCLYRALAVACGKLDPNYLPKLDATRPVCEIGPFESWSDASKIGTMDPWGHVVTDVYKPWLRKGYDIRPTIAVTEAHIDLPEVREAVRVGRLKPDGKILTEDGQSFITKCAVEPVWYLPEIARRFGVDEVKLRETLFKETNMMYPELVTREDLKV 564
            + WG   PE RGP++AT+R PTQRN IGAHSG Y +YRALAV   KLD +YLPKL  T PV  +GPF +W D  +I T+DP+GH V++ + PWL KGYDIRPTIAVT+AHI+LPE REA+RVGRL+ DG +LT +GQSF+TK A+EPVWYLP +A RFGV E +LRE+LFKETN MYPEL+TR DLK+
Sbjct:  161 MSWGAASPEARGPVLATSRHPTQRNVIGAHSGGYSIYRALAVVSQKLDNDYLPKLGMTTPVARVGPFPAWHDPKRIVTIDPYGHAVSEGFAPWLEKGYDIRPTIAVTKAHIELPECREALRVGRLEADGAVLTAEGQSFVTKAAIEPVWYLPGVAERFGVTEQRLRESLFKETNSMYPELLTRNDLKL 348          
BLAST of mRNA_F-distichus_contig9712.19164.1 vs. uniprot
Match: K0T0F0_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0T0F0_THAOC)

HSP 1 Score: 264 bits (674), Expect = 7.590e-84
Identity = 119/188 (63.30%), Postives = 146/188 (77.66%), Query Frame = 1
Query:    1 LQWGEEDPEKRGPIIATTRQPTQRNAIGAHSGSYCLYRALAVACGKLDPNYLPKLDATRPVCEIGPFESWSDASKIGTMDPWGHVVTDVYKPWLRKGYDIRPTIAVTEAHIDLPEVREAVRVGRLKPDGKILTEDGQSFITKCAVEPVWYLPEIARRFGVDEVKLRETLFKETNMMYPELVTREDLKV 564
            + WG  DP  RGP+I T R  +QRNAIGAHSGSYC+Y  LAVA GKL+P Y+P L  T PV +IGP  SW D  KI ++DP+GH+ TDVY  +L KG+DIRPTIA+T+AHIDLPE REAV+ GRLKPDGK+L   GQS ++K A+EPVWYLPEIARRFG  E  LR+++F+ TN MYPEL+TR D+K+
Sbjct:   48 VSWGHPDPLVRGPVICTVRHSSQRNAIGAHSGSYCVYTGLAVAAGKLNPEYVPNLKLTSPVFDIGPHSSWYDPKKIASIDPFGHLTTDVYSSYLNKGFDIRPTIAITKAHIDLPETREAVQSGRLKPDGKVLLPSGQSIVSKAAIEPVWYLPEIARRFGCTETTLRQSIFQMTNGMYPELITRPDIKI 235          
BLAST of mRNA_F-distichus_contig9712.19164.1 vs. uniprot
Match: A0A7S3P7U7_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3P7U7_9STRA)

HSP 1 Score: 264 bits (674), Expect = 1.080e-83
Identity = 119/188 (63.30%), Postives = 145/188 (77.13%), Query Frame = 1
Query:    1 LQWGEEDPEKRGPIIATTRQPTQRNAIGAHSGSYCLYRALAVACGKLDPNYLPKLDATRPVCEIGPFESWSDASKIGTMDPWGHVVTDVYKPWLRKGYDIRPTIAVTEAHIDLPEVREAVRVGRLKPDGKILTEDGQSFITKCAVEPVWYLPEIARRFGVDEVKLRETLFKETNMMYPELVTREDLKV 564
            + WG  DP+ RGP+I T R   QRNAIGAHSGSYC+Y  LAVA GKLDPNY+P L  T PV +IGP+ +WSD  KI ++DP+GH+ T+ Y  WL +G+DIRPT+AVT+AHIDLPEVREA+R GRL  DGKIL   GQS + K A+EPVWYLPEIARRF   E  LR+++F+ TN MYPEL+TR D+KV
Sbjct:   76 ISWGHPDPKVRGPVICTVRHSAQRNAIGAHSGSYCIYTGLAVAAGKLDPNYVPNLSLTSPVFKIGPYPAWSDPKKIASIDPFGHLTTEAYGNWLEQGWDIRPTVAVTKAHIDLPEVREALRTGRLTADGKILKASGQSVVAKAAIEPVWYLPEIARRFQTTESHLRQSIFRMTNGMYPELITRPDIKV 263          
BLAST of mRNA_F-distichus_contig9712.19164.1 vs. uniprot
Match: W7T706_9STRA (Gtp cyclohydrolase ii n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T706_9STRA)

HSP 1 Score: 265 bits (678), Expect = 1.740e-83
Identity = 121/188 (64.36%), Postives = 149/188 (79.26%), Query Frame = 1
Query:    1 LQWGEEDPEKRGPIIATTRQPTQRNAIGAHSGSYCLYRALAVACGKLDPNYLPKLDATRPVCEIGPFESWSDASKIGTMDPWGHVVTDVYKPWLRKGYDIRPTIAVTEAHIDLPEVREAVRVGRLKPDGKILTEDGQSFITKCAVEPVWYLPEIARRFGVDEVKLRETLFKETNMMYPELVTREDLKV 564
            ++WGEEDPE RGPI+ATTR  +QRNAIGAHSGSYC+Y+ALAVA G LDP Y P+ + T PV +IGPF  W    KI  MDP+GHV  + +  +LRKG+DIRPTIAVT+AHI+L E+ +A+++GRL  DG +LT+DGQ  +TK A+EPVWYLP +A RF V E KLRETLF ETNMMYPEL+TR D+KV
Sbjct:   69 MKWGEEDPEVRGPIVATTRHQSQRNAIGAHSGSYCIYKALAVAAGALDPYYKPRFENTTPVAKIGPFPQWWAHHKIVAMDPFGHVTQEAFSAYLRKGFDIRPTIAVTKAHIELSEISQAMKLGRLHADGNVLTKDGQVNVTKAAIEPVWYLPAVAERFSVSEAKLRETLFVETNMMYPELITRPDIKV 256          
BLAST of mRNA_F-distichus_contig9712.19164.1 vs. uniprot
Match: A0A7S2FI45_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2FI45_9STRA)

HSP 1 Score: 263 bits (671), Expect = 2.670e-83
Identity = 123/186 (66.13%), Postives = 147/186 (79.03%), Query Frame = 1
Query:    1 LQWGEEDPEKRGPIIATTRQPTQRNAIGAHSGSYCLYRALAVACGKLDPNYLPKLDATRPVCEIGPFESWSDASKIGTMDPWGHVVTDVYKPWLRKGYDIRPTIAVTEAHIDLPEVREAVRVGRLKPDGKILTEDGQSFITKCAVEPVWYLPEIARRFGVDEVKLRETLFKETNMMYPELVTREDL 558
            ++WG     +RGP+IATTR  +QRNAIGAHSG Y +Y+ALAVA G LDPNY+PK D T PV ++GPF SW D  +I  MDP+GH+ +  ++  ++KGYDIRPTIA+T+AHIDLPE +EA+RVGRL PDG +LT+DGQS ITK AVEPVW LP IA RFG  E  LRETLFKETNMMYPELVTR DL
Sbjct:   39 IKWGAATSAERGPVIATTRHSSQRNAIGAHSGGYSVYKALAVATGGLDPNYMPKFDLTTPVVKMGPFPSWHDPKRIVAMDPYGHMPSIAFEGHVKKGYDIRPTIAITKAHIDLPECKEAIRVGRLTPDGDVLTQDGQSHITKFAVEPVWNLPGIAERFGCTEANLRETLFKETNMMYPELVTRPDL 224          
BLAST of mRNA_F-distichus_contig9712.19164.1 vs. uniprot
Match: A0A7S3GYW6_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GYW6_9STRA)

HSP 1 Score: 261 bits (668), Expect = 3.290e-83
Identity = 117/188 (62.23%), Postives = 145/188 (77.13%), Query Frame = 1
Query:    1 LQWGEEDPEKRGPIIATTRQPTQRNAIGAHSGSYCLYRALAVACGKLDPNYLPKLDATRPVCEIGPFESWSDASKIGTMDPWGHVVTDVYKPWLRKGYDIRPTIAVTEAHIDLPEVREAVRVGRLKPDGKILTEDGQSFITKCAVEPVWYLPEIARRFGVDEVKLRETLFKETNMMYPELVTREDLKV 564
            + WG  DP  RGP+IAT +   QRNAIGAHSG YC+Y ALAVA G+L+ N++P L  T P  + GPF SW D  K+ T+DPWGH+VT V++P+ +KGYDIRPTIAVT+AHID PEV+EA+R+GRL PDGKIL  D Q+ +TK A+EPVWYLP +A RF   E  LR+ LFKETNMMYPEL+TR D+K+
Sbjct:   43 MNWGHPDPAVRGPVIATVKHGGQRNAIGAHSGGYCIYTALAVASGELNTNHIPNLKMTSPTNDFGPFPSWKDPKKLVTIDPWGHMVTSVFEPYFKKGYDIRPTIAVTKAHIDFPEVKEAIRLGRLIPDGKILKADAQAMVTKAAIEPVWYLPGVAERFQCTEQALRQALFKETNMMYPELLTRTDIKL 230          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9712.19164.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLZ3_ECTSI7.740e-11684.04GTP_CH_N domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YXC9_9STRA3.730e-10376.60GTP cyclohydrolase N terminal-domain-containing pr... [more]
A0A6V1R1S8_HETAK4.490e-8969.68Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A7S1U4W9_9STRA7.840e-8767.02Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A7S2JIP4_9DINO7.650e-8665.43Hypothetical protein n=2 Tax=Brandtodinium nutricu... [more]
K0T0F0_THAOC7.590e-8463.30Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3P7U7_9STRA1.080e-8363.30Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
W7T706_9STRA1.740e-8364.36Gtp cyclohydrolase ii n=1 Tax=Nannochloropsis gadi... [more]
A0A7S2FI45_9STRA2.670e-8366.13Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3GYW6_9STRA3.290e-8362.23Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9712contigF-distichus_contig9712:5924..11316 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score344.0
Seed ortholog evalue4.5e-92
Seed eggNOG ortholog2880.D7FLZ3
Hectar predicted targeting categoryother localisation
EggNOG free text desc.3,4-dihydroxy-2-butanone-4-phosphate synthase activity
EggNOG OGsCOG0807@1,KOG1284@2759
Ec32 ortholog descriptionGTP cyclohydrolase N-terminal
Ec32 orthologEc-22_000270.1
COG Functional cat.H
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size564
Cds size564
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9712.19164.1prot_F-distichus_contig9712.19164.1Fucus distichus monoicouspolypeptideF-distichus_contig9712 5924..11316 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931149.8734848-CDS-F-distichus_contig9712:5923..60611622931149.8734848-CDS-F-distichus_contig9712:5923..6061Fucus distichus monoicousCDSF-distichus_contig9712 5924..6061 -
1690886179.9730322-CDS-F-distichus_contig9712:5923..60611690886179.9730322-CDS-F-distichus_contig9712:5923..6061Fucus distichus monoicousCDSF-distichus_contig9712 5924..6061 -
1622931149.8869781-CDS-F-distichus_contig9712:8725..88871622931149.8869781-CDS-F-distichus_contig9712:8725..8887Fucus distichus monoicousCDSF-distichus_contig9712 8726..8887 -
1690886179.9850118-CDS-F-distichus_contig9712:8725..88871690886179.9850118-CDS-F-distichus_contig9712:8725..8887Fucus distichus monoicousCDSF-distichus_contig9712 8726..8887 -
1622931149.8993232-CDS-F-distichus_contig9712:9857..100071622931149.8993232-CDS-F-distichus_contig9712:9857..10007Fucus distichus monoicousCDSF-distichus_contig9712 9858..10007 -
1690886179.994702-CDS-F-distichus_contig9712:9857..100071690886179.994702-CDS-F-distichus_contig9712:9857..10007Fucus distichus monoicousCDSF-distichus_contig9712 9858..10007 -
1622931149.9111905-CDS-F-distichus_contig9712:11202..113161622931149.9111905-CDS-F-distichus_contig9712:11202..11316Fucus distichus monoicousCDSF-distichus_contig9712 11203..11316 -
1690886180.0051386-CDS-F-distichus_contig9712:11202..113161690886180.0051386-CDS-F-distichus_contig9712:11202..11316Fucus distichus monoicousCDSF-distichus_contig9712 11203..11316 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9712.19164.1

>prot_F-distichus_contig9712.19164.1 ID=prot_F-distichus_contig9712.19164.1|Name=mRNA_F-distichus_contig9712.19164.1|organism=Fucus distichus monoicous|type=polypeptide|length=188bp
LQWGEEDPEKRGPIIATTRQPTQRNAIGAHSGSYCLYRALAVACGKLDPN
YLPKLDATRPVCEIGPFESWSDASKIGTMDPWGHVVTDVYKPWLRKGYDI
RPTIAVTEAHIDLPEVREAVRVGRLKPDGKILTEDGQSFITKCAVEPVWY
LPEIARRFGVDEVKLRETLFKETNMMYPELVTREDLKV
back to top

mRNA from alignment at F-distichus_contig9712:5924..11316-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9712.19164.1 ID=mRNA_F-distichus_contig9712.19164.1|Name=mRNA_F-distichus_contig9712.19164.1|organism=Fucus distichus monoicous|type=mRNA|length=5393bp|location=Sequence derived from alignment at F-distichus_contig9712:5924..11316- (Fucus distichus monoicous)
CTGCAGTGGGGGGAGGAAGACCCCGAGAAGCGGGGCCCGATCATCGCTAC TACCCGACAACCCACGCAGAGGAACGCCATCGGTGCCCACAGCGGCAGCT ACTGCCTTTACAGGGTATGCGTATGAAGTTTGTTGATGCTGCTGCTGTGT AACGGTGGTACTTCCAGACAGTAGAAGCTGTAGTTCGTACCCAACAGACA TCGTGTTGACGCCGATAGGTTTCCGATGTTCCCGGTCGGTTGGACCTGGC ATGGGTTTTGTCGCGATTTGGATCCATCCCTGTTGGTTTGAGTAGCGGGC TGTCACCACGATGTGAACCGTTGACCTTCGTACCTCTTTGTGACTACGAG CGTGATTCGCAGTTTCTTCAGTTGCAAGGACAATACGTTGAATGTGTTGA TCAACAACAGCAACAACAACTTCCAAGCGTTTGGTGGTTTTCAAAATGTA CCGAAATACATGTTTGATAACATCGTGCATCGTCCTCGGGCAACATCACG ATACACTCACATGCCGCATGAATGGTTTTCTGGTGTTTGGGGCTTTTTGT TGTTATTCATTTGTTTTCTTCGATGGAGGGGTGGGGGGGGGGTGTTTTNN NNNNNNNNTCGTGATACCTTGCTTTGCGTTTTTTTGGTTTTTGTTGGGTT TGGGTTTTTTTTTGTTTGTTTTTTTTTTTTTTTGGGGGGTGGGGGGGGGG GGGGTGTTTTTATTTTTATTCTTTATTAGCATGGGTACTACCGTTATCCC CAGTGCCGTTTCCGTGTTTGAATAAAAAGCTAAACGCGTACAAACCTTCG TAATATCTACACTGTCACTGCTGCTGCTGACGTGTTACACCTGTGCGCCG TCATCAACCAGGCCCTCGGTTAGCAATACCATATACAGTAAAAGTAAAGT ACGAGTAGAATCAACACCTCAAACGATGCTTTCATCCCGTTGTCCGTCAA TCGCTGCCGCGGAGTCGGAGCTTGAGCTGGAGAAAACGGCGACGCCCTCC GACGCCTCACCAACCTTGTCCAACTCCTCGAAGAATAGCTCCTTGCCCTC TCTAGCACATTTACTTGTAAGCATAGGTCCTCGAAGACAGTTCCCAACTA ATGTACGGCACAGCCCTTAACAAATCATTTAACGTTATATATACATTGCA TATCATGTAGCGAACGACTGTGTGGTCAAATTTCGTACCGGGCGTTAAAG CCAAATATTTTAAGTATCTCAAATGTTGGCGACGCGTGCATCCCCCCCCG ACTTCCCGACCCGCCGACGCCTCCATGTCCATATCGTGCTTTCCACACTG AACTGAAAGGCGTTGGCCGTGGCGTGTGGCAAACTGGACCCGAACTACTT GCCGAAGCTGGATGCGACGCGCCCTGTCTGCGAAATCGGGCCGTTTGAGT CATGGTCGGATGCTTCTAAGATCGGTACCATGGATCCTTGGGGACATGTG GTCACGGATGTGAGTGAGGTCATGGTTTTCGGACTCGGATGGCCGTCGAT GGCGGAGGCATGAAAGGCGAATTGGGATGTATCGGGAGGGGACTTTGTTC GTTCTACCCCCCCCCCCCCTACTGCTTGTCGCTCGATTGAATTAAAATGT GTATCGACGTTTTTCACCAGCGTGGATTTTGTGAGTTTAATTTCTTAGAT TATGGTTTCCGTCGTAGCGGAAAACGCGAAAACGTAAGAACGCGAGGAAG CGAAATTTAACCGTTGTATGACCAGGTGTAAATGGTGTTGACTCTGCATC CAGTTGAAAAAAAGTAGGCGTGAACCGGGCAGAGATGGGAAGGTCCACAG GCAGGATGGCAACTTTGCAACAGAGGTGGGATGGGTAATCCACCCCACGT TGGTTGGGTGCCCAACGGCGCAGAAAGTGAGATACGAACAAAAACTAAAT AGACGGTGAGCGTCATGTCCTTGGCCTAACAAGCTCCCTTTGACAAGGAC ACTTGGAAGTTTATAAGCTTGCCTGTAACCCCCTGGTGGGCGTGACAAGG TCAAACGGGAGTATGTCGCCTTTTTCTCCTCCCTGGAGGAGGGCGTATGG TTACAATGCCCGAGATTGGACGCCTGGTGACAGACGAAAAGTTATTGACT CCTTTGGGGTTGGCGGCTGTGATGACGGGTTGTTGCGGCCAAGGGACTGG AATCGGGGACTAAGATTTGACTTTTTGTATTTTTTATCCCGACCACTTAG TGTCATTTATAGCTCTTGTGAGACGTAAAGCGTAGCCGGTGTTCTCTTCA GTCAACGCCGATTTGAATAGCTTAGTGAGAGGGGCGAGGAAGGAACGTTG AATTGGGATATCGCGGTAGGGGATGCTTTTTTATGTCCCCCCCCCCTTTC CCCTTTCCCTCGGCGACGCGTTGGCCGAACCTCCTTTTCTTCTCTTGTTT TGTTGGATGTTTTCTTGTACCGTACACAGGTGTACAAACCGTGGCTTAGA AAGGGATACGACATTCGACCGACCATCGCCGTCACCGAGGCTCACATCGA CCTGCCAGAGGTCAGGGAGGCGGTGAGAGTCGGCAGGCTCAAGCCGGACG GGAAGATCTTGACCGAAGACGGACAATCCTTCATCACAAAGGTAGGAGAG AAGCACTGAAACGTAACTGAACTTGACGAGCCATGAAGTTTCTCGTAACG AAACGAAACATTTTTGAAGCAAAGACGAAACGGCCGATTGTGATTTTTTT GTTTGGCAACCCTACAAACAGTCAATGTACCCACCCAACTGCAGAAGACT ATACCAGTACCGATTTTCGCCGAACTTGGTATAAAAAAGTTTCGATGATC GGAATATGTGAATGTGTTTTTAAGGGTTCCGCCTCTAGGGTAAGAGGAAG CGAAACGTAACATGAGGCAACGAAATATTTTAGAATATCAACGGCGTCAA GTATGGGCAGAAATATCACCGGTACGTTGTTATATAAGTGAAAATGTCGC GGAGGTGGTAACTTAAGGCTGTAGTAAACACAGTAGGAGGTTTGCTGGCC TCGAGGCGTGTTTTTTGCTGGTTACCGTTCGTTTTTTTTTGTTCCTGGAC GATCAACTCAGACGCACGCACCCCTTTGAACACGAGAATAGAAAAAAACT CGCGAGGATGGCTGCATTCTACAAGTAACTTATACGACAGTAGTTGCGTT CAGATTCTTCTAAACACATTCTGAAGTAAGAGTACCCTGGCACAGAGCTC GGAGTATCGTGAGTTGCACACCTACCGAACCATAGCGGACAGAAAATATA AATCCCCCAAGCGTGCCCGCAACAACCTCAAGGTGCCCCGATATCAGGTG GGAGTTGAGGATACAGGCTACAGTATATATGTATGCATGTGTGGCCATCA CATGTACTGAGTACAAATCAACCGGGTAAAGTTGCCCATCCTGTTCATGG TCAGCTGAACAGGGAAAATTTCCTTGTCCGCGTTCGCGCCTGAGAATTTG GTTTCGCGACACAGGTTTGGCTGCCCCGTCTCGTTTCAGCTTGCTCATTC TCTATACTAACGCTGAATCTGGTGCTTACTCACGGGAATTCTTCCGAATC GGATGTCCACGGCGGCATCCACATATTTTTACCAGCAACAATTTACCATC GGGTCAGTCCCGAGTTTATCGGGTCACGTAATTGCGTACCGATGGCGTTC ACTGCCGCGAGTCCGTTGGCATACCTATGTCTTTCACTGCCGCGAGTCCG TTGGCACAGAGCCAGTAGTCCTCAAGGTAGTTCGAGTAACGGCTGCTGCC TTTGCGTCACCATGGACCAAGTGTTATTGTGCACCTCTCTTTTCCCACAC CCACTACTGGTATAAAGTGAGTTTAACCGCAATATATAATAATATTATAG TACTGATGTAGATAGATGTACTACTGCAGTACCAGTTTTTTCCACCCGAA TTCTGTACATGGTTCAATGACGTCTGTTATATTTCAAAACATACTGTAAT CCAATTATTATTGCTGTACTTGAGGCTCCTAGTGTGTTCACGACAGAAAA AATGGCAATTTTGTACATTCCGAATCACAAAATTGATGAACCGAGCGTTG AACGATGTCTATAATTTCAGGCTAAATGACTACGTCAGGGTGTAATCTAT CTCCCTTCATCCTGCGGCAAACGTTTTCGGGAGAGAATTGCCCTCGTTTG GCGAGTCGAAGAGGAACCCTTCGGGGTACCGGGTGACCGAATTTCAACCT AAGCTAGCGTATACAGGAAAATGTAAACCGTGTCTCCTGTACGGCAGATT TAAGCCTCGTTCAAGTTCAGGCACAGAGGTAACACCTCAATGATGCGATA CCTCTAATTGTGGATGCGTGGGGGACATGTGGCGCTCGCGAGCGCTCAGC ACATTTGCGTTACCATGAAATGCGGACCATTACAAACTCCAGTACCGGTA GGGAAGTTGAGGCTCTCATGTATCACCTTGTAGCACGTGCACGCCACACC TGCGAATAATCGCAGGGCCAAGGCCACCCTTTATATCGCACAGGCTACAA TATTCTGCCCTCACTAAAGGTTTTTTCCTGAACCCCCGAGCCACACGACC ACCGTGCAGGTCTCGGGCAGCCCCCCTCTCGGATTTGGAGGTAGCGGACA GGGCTGATGCTTCAACCCTCGAATACGAGCGACACAGAGCCCGCCTAAGC GTAAAAACTTCAATCGTCGAGCTTTCTCATGTACCTCTACATGCACGCAC CTTGACGGGCCCCGCTCTGTCGAATTGGGCAACCTCCCTTCCAAGCCTTG TCCGCGCGAGCCGCGAGCAGAAGTTTCTGGGGGCTTAGAGAGGCTCTCAA ATGGTACTGACGTTGTACCGCATATATATATATATATACATTTTGCTGTG TAACCGTTTACATGAATTGATGAAAAACGGGGATGTGGGGATATTTCCTG TTTACTACAGCCTTAAGTCAACAATAATCGAAAATAATACATGGGGTGTA AAGGCTTCTGCTGCAAGGGTGTCAATTGACGGAAACCCCGCTTTGAATTG CCCGACCTCGGGCTACTCCGCAAACAGCTGCAAAGCGTAACAAAGAGGAA GGGGAATGGAAATATAATATATTTTTTCGTTTTTATATTCCGTTCTGTTC CTTTTCGTCTCTTTGTTCAGTTGCAAGAAAATAGACGAATCTGAACTCAT TCAAAACGACTTATTCCAACCCGTTCTGTTCTGTTTCGTTTCGTTTCGTT TCGTTTTGTTCCGTTTTATTCCGTTTCGTCAACTTGTCGTCTGTTGCTAC CTTAGTGCGCGGTGGAGCCGGTGTGGTACCTTCCCGAGATCGCCCGTCGA TTTGGGGTGGACGAAGTCAAGCTCCGAGAGACCTTGTTCAAGGAGACCAA CATGATGTACCCGGAGCTCGTCACCAGAGAAGACCTCAAGGTA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig9712:5924..11316-

>mRNA_F-distichus_contig9712.19164.1 ID=mRNA_F-distichus_contig9712.19164.1|Name=mRNA_F-distichus_contig9712.19164.1|organism=Fucus distichus monoicous|type=CDS|length=1128bp|location=Sequence derived from alignment at F-distichus_contig9712:5924..11316- (Fucus distichus monoicous)
CTGCAGTGGGGGGAGGAAGACCCCGAGAAGCGGGGCCCGATCATCGCTAC
TACCCGACAACCCACGCAGAGGAACGCCATCGGTGCCCACAGCGGCAGCT
ACTGCCTTTACAGGCTGCAGTGGGGGGAGGAAGACCCCGAGAAGCGGGGC
CCGATCATCGCTACTACCCGACAACCCACGCAGAGGAACGCCATCGGTGC
CCACAGCGGCAGCTACTGCCTTTACAGGGCGTTGGCCGTGGCGTGTGGCA
AACTGGACCCGAACTACTTGCCGAAGCTGGATGCGACGCGCCCTGTCTGC
GAAATCGGGCCGTTTGAGTCATGGTCGGATGCTTCTAAGATCGGTACCAT
GGATCCTTGGGGACATGTGGTCACGGATGCGTTGGCCGTGGCGTGTGGCA
AACTGGACCCGAACTACTTGCCGAAGCTGGATGCGACGCGCCCTGTCTGC
GAAATCGGGCCGTTTGAGTCATGGTCGGATGCTTCTAAGATCGGTACCAT
GGATCCTTGGGGACATGTGGTCACGGATGTGTACAAACCGTGGCTTAGAA
AGGGATACGACATTCGACCGACCATCGCCGTCACCGAGGCTCACATCGAC
CTGCCAGAGGTCAGGGAGGCGGTGAGAGTCGGCAGGCTCAAGCCGGACGG
GAAGATCTTGACCGAAGACGGACAATCCTTCATCACAAAGGTGTACAAAC
CGTGGCTTAGAAAGGGATACGACATTCGACCGACCATCGCCGTCACCGAG
GCTCACATCGACCTGCCAGAGGTCAGGGAGGCGGTGAGAGTCGGCAGGCT
CAAGCCGGACGGGAAGATCTTGACCGAAGACGGACAATCCTTCATCACAA
AGTGCGCGGTGGAGCCGGTGTGGTACCTTCCCGAGATCGCCCGTCGATTT
GGGGTGGACGAAGTCAAGCTCCGAGAGACCTTGTTCAAGGAGACCAACAT
GATGTACCCGGAGCTCGTCACCAGAGAAGACCTCAAGGTATGCGCGGTGG
AGCCGGTGTGGTACCTTCCCGAGATCGCCCGTCGATTTGGGGTGGACGAA
GTCAAGCTCCGAGAGACCTTGTTCAAGGAGACCAACATGATGTACCCGGA
GCTCGTCACCAGAGAAGACCTCAAGGTA
back to top