mRNA_F-distichus_contig97021.19155.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97021.19155.1
Unique NamemRNA_F-distichus_contig97021.19155.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig97021.19155.1 vs. uniprot
Match: D8LAW8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LAW8_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 6.800e-37
Identity = 95/149 (63.76%), Postives = 103/149 (69.13%), Query Frame = 1 
Query:    1 KELEIGEWPPVSSD-PIPLLPDTPTMSTPARAHAVVAAXXXXXXXXXXKM-----------AAAFQGVKLTDTEKADPFAVETLDSNNVLEAEIEAVSAKAATGDIAAVTRKGALETKLMMLVSAVQSGELDLPAYCGILKERIVRDKV 411
            KELE+GEWP VS D P+   P                 XXXXXXXXXX             AA FQ V LTD EK DPF VE LDSNNVLEAEIEA++ KAATGD+A+V RKGALETKL+MLVSAVQSGELDLPAYC ILKER+VRDKV
Sbjct:  138 KELEVGEWPTVSLDEPVAQAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAAKFQSVVLTDKEKTDPFGVENLDSNNVLEAEIEAIAPKAATGDLASVMRKGALETKLLMLVSAVQSGELDLPAYCNILKERVVRDKV 286
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BLAST of mRNA_F-distichus_contig97021.19155.1 vs. uniprot
Match: A0A6H5JQ36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ36_9PHAE)

HSP 1 Score: 136 bits (342), Expect = 2.430e-34
Identity = 72/88 (81.82%), Postives = 78/88 (88.64%), Query Frame = 1 
Query:  148 AAAFQGVKLTDTEKADPFAVETLDSNNVLEAEIEAVSAKAATGDIAAVTRKGALETKLMMLVSAVQSGELDLPAYCGILKERIVRDKV 411
            AA FQ V LTD EK DPF VE LDSNNVLEAEIEA++ KAATGD+A+V RKGALETKL+MLVSAVQSGELDLPAYC ILKER+VRDKV
Sbjct:  782 AAKFQSVVLTDKEKIDPFGVENLDSNNVLEAEIEAIAPKAATGDLASVMRKGALETKLLMLVSAVQSGELDLPAYCNILKERVVRDKV 869
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97021.19155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LAW8_ECTSI6.800e-3763.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQ36_9PHAE2.430e-3481.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97021contigF-distichus_contig97021:2..1571 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size438
Cds size438
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97021.19155.1prot_F-distichus_contig97021.19155.1Fucus distichus monoicouspolypeptideF-distichus_contig97021 2..1571 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.8316417-CDS-F-distichus_contig97021:1..1831622931148.8316417-CDS-F-distichus_contig97021:1..183Fucus distichus monoicousCDSF-distichus_contig97021 2..183 +
1690886179.4253485-CDS-F-distichus_contig97021:1..1831690886179.4253485-CDS-F-distichus_contig97021:1..183Fucus distichus monoicousCDSF-distichus_contig97021 2..183 +
1622931148.852398-CDS-F-distichus_contig97021:750..8921622931148.852398-CDS-F-distichus_contig97021:750..892Fucus distichus monoicousCDSF-distichus_contig97021 751..892 +
1690886179.4357045-CDS-F-distichus_contig97021:750..8921690886179.4357045-CDS-F-distichus_contig97021:750..892Fucus distichus monoicousCDSF-distichus_contig97021 751..892 +
1622931148.8652916-CDS-F-distichus_contig97021:1457..15711622931148.8652916-CDS-F-distichus_contig97021:1457..1571Fucus distichus monoicousCDSF-distichus_contig97021 1458..1571 +
1690886179.4450629-CDS-F-distichus_contig97021:1457..15711690886179.4450629-CDS-F-distichus_contig97021:1457..1571Fucus distichus monoicousCDSF-distichus_contig97021 1458..1571 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97021.19155.1

>prot_F-distichus_contig97021.19155.1 ID=prot_F-distichus_contig97021.19155.1|Name=mRNA_F-distichus_contig97021.19155.1|organism=Fucus distichus monoicous|type=polypeptide|length=146bp
KELEIGEWPPVSSDPIPLLPDTPTMSTPARAHAVVAAAPAAAASAASKMA
AAFQGVKLTDTEKADPFAVETLDSNNVLEAEIEAVSAKAATGDIAAVTRK
GALETKLMMLVSAVQSGELDLPAYCGILKERIVRDKVRLAVQPPQ*
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mRNA from alignment at F-distichus_contig97021:2..1571+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97021.19155.1 ID=mRNA_F-distichus_contig97021.19155.1|Name=mRNA_F-distichus_contig97021.19155.1|organism=Fucus distichus monoicous|type=mRNA|length=1570bp|location=Sequence derived from alignment at F-distichus_contig97021:2..1571+ (Fucus distichus monoicous)
AAGGAGCTCGAGATTGGCGAATGGCCGCCCGTCTCGTCCGATCCGATCCC
TCTTCTCCCCGATACGCCGACCATGTCGACCCCAGCACGGGCACACGCTG
TCGTTGCGGCTGCTCCAGCAGCAGCAGCTTCAGCAGCATCGAAAATGGCG
GCGGCGTTCCAGGGCGTGAAGTTGACCGACACGTGAGTGTGTTTTCCTCC
GTTTGGTTGAATCATCCGCCCAACCACGAGCAAGGTTGACAACGGTACGT
GGTTGATGACCAATCTGCTGGACGTGATGGCCATAAACACACACACACAC
ACACACGTACATACAAAGGCACATGCTCTTGGCAAAGGTGTGTGCATTTG
TTTTGGTAGAGAGAACTGGCTGGATTATTCGTACGCACGGGGGGGTACGT
TGGAAGTCCCTCCCCTCCCCCCCCTTCTTGCTAGAGCTATAGACTATAAT
ACTACTAACAGTATACACTACACAAATGACAGCTATTGATAGTTTCGCTG
TTGTAGCCTTCTTTTTGTGTTGTGTGTACTGCTGTACTATAAATGTTATG
TTCTACAGCATTTTGTGTCTTGTCGGAAAATTCCACGCGCCGTTCCGCTG
GAAACGTTCCGCGCGGCTTTCGGTGCGTGACAGGGAGAAGACGTACTCTG
TTGTTGGACCGTTGTGAGGTACTTGTACTGTGGTACTGTGGTGTTCTTAA
TTGGTTCCGCTGGGAACGTTCCGTGGGGGGCTTTTTCCGCGCGTGACAGA
GAGAAGGCGGATCCGTTCGCGGTGGAAACCTTGGACAGCAACAACGTCCT
CGAGGCTGAGATCGAGGCGGTTAGCGCCAAGGCGGCCACGGGCGACATCG
CTGCGGTGACCCGGAAAGGGGCTCTCGAGACCAAGCTTATGGTAAGCTGA
ACGATTTTGATTTTGTCCGATTGGTGTGATATATCGTGTAATGAAGGCCG
AGTAACGATTGAAGGCCGTTTACCTAACTGACGTTCTCCACCGAATGAAA
CTCGTTAAGCGAATGGAAATAAGGCTGTGTACGGAATGGAAGCCGATTTA
ACAGGATATAAGCCGTGTGCCGCATGGAGGCCACTTGCCGAATGAAGTCT
GTGTGCCGAATAAAGGTCGTGTGCAGAAATGAACGCCGTTTACCGAGCAA
CAGTTGTGAGAGATTTATTTGCTACTGGATGCCCCAGCGGGGGGGGGGAG
GACCGTTGCGTACTTCTGTTTTGCATTTTTCTTACAGTACCTCCTGTAGT
AATACAATGCCTACGAGGTCGATGCCACCCTCAAATAATTTGATTGGGTG
CATCGGCGCACAAACTATAAATAGTTGTGAAGTGGATGTAGGAATAGTGA
AGTGCTGGACAAGATTCGTGAATGAACTCTTAATCAGGTGCTTTTCGCCT
CTTCGCTTGGCCGTGATACTGCAACACTGTACACTTTACCCTACACCGCT
GTACAGATGTTGGTATCGGCGGTGCAGTCGGGCGAGCTCGATCTGCCAGC
GTACTGCGGGATCTTGAAGGAGAGGATAGTGCGGGACAAGGTAAGACTGG
CCGTCCAACCGCCTCAATGA
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Coding sequence (CDS) from alignment at F-distichus_contig97021:2..1571+

>mRNA_F-distichus_contig97021.19155.1 ID=mRNA_F-distichus_contig97021.19155.1|Name=mRNA_F-distichus_contig97021.19155.1|organism=Fucus distichus monoicous|type=CDS|length=876bp|location=Sequence derived from alignment at F-distichus_contig97021:2..1571+ (Fucus distichus monoicous)
AAGGAGCTCGAGATTGGCGAATGGCCGCCCGTCTCGTCCGATCCGATCCC
TCTTCTCCCCGATACGCCGACCATGTCGACCCCAGCACGGGCACACGCTG
TCGTTGCGGCTGCTCCAGCAGCAGCAGCTTCAGCAGCATCGAAAATGGCG
GCGGCGTTCCAGGGCGTGAAGTTGACCGACACAAGGAGCTCGAGATTGGC
GAATGGCCGCCCGTCTCGTCCGATCCGATCCCTCTTCTCCCCGATACGCC
GACCATGTCGACCCCAGCACGGGCACACGCTGTCGTTGCGGCTGCTCCAG
CAGCAGCAGCTTCAGCAGCATCGAAAATGGCGGCGGCGTTCCAGGGCGTG
AAGTTGACCGACACAGAGAAGGCGGATCCGTTCGCGGTGGAAACCTTGGA
CAGCAACAACGTCCTCGAGGCTGAGATCGAGGCGGTTAGCGCCAAGGCGG
CCACGGGCGACATCGCTGCGGTGACCCGGAAAGGGGCTCTCGAGACCAAG
CTTATGAGAGAAGGCGGATCCGTTCGCGGTGGAAACCTTGGACAGCAACA
ACGTCCTCGAGGCTGAGATCGAGGCGGTTAGCGCCAAGGCGGCCACGGGC
GACATCGCTGCGGTGACCCGGAAAGGGGCTCTCGAGACCAAGCTTATGAT
GTTGGTATCGGCGGTGCAGTCGGGCGAGCTCGATCTGCCAGCGTACTGCG
GGATCTTGAAGGAGAGGATAGTGCGGGACAAGGTAAGACTGGCCGTCCAA
CCGCCTCAATGAATGTTGGTATCGGCGGTGCAGTCGGGCGAGCTCGATCT
GCCAGCGTACTGCGGGATCTTGAAGGAGAGGATAGTGCGGGACAAGGTAA
GACTGGCCGTCCAACCGCCTCAATGA
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