mRNA_F-distichus_contig97000.19153.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig97000.19153.1
Unique NamemRNA_F-distichus_contig97000.19153.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig97000.19153.1 vs. uniprot
Match: D7FI79_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI79_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 7.420e-7
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    1 WYCERARELDARAGQLRHASVMCELGAARVFV 96
            WY  RARELDARAGQLRHA+ +C  GA RV V
Sbjct: 1065 WYAGRARELDARAGQLRHAATLCRFGARRVVV 1096
[Close]
BLAST of mRNA_F-distichus_contig97000.19153.1 vs. uniprot
Match: A0A6H5JI52_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI52_9PHAE)

HSP 1 Score: 52.4 bits (124), Expect = 7.510e-7
Identity = 23/32 (71.88%), Postives = 25/32 (78.12%), Query Frame = 1 
Query:    1 WYCERARELDARAGQLRHASVMCELGAARVFV 96
            WY  RARELDARAGQLRHA+ +C  GA RV V
Sbjct:  389 WYAGRARELDARAGQLRHAATLCRFGARRVVV 420
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig97000.19153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FI79_ECTSI7.420e-771.88Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JI52_9PHAE7.510e-771.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig97000contigF-distichus_contig97000:1302..1403 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size102
Cds size102
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931148.55378-CDS-F-distichus_contig97000:1301..14031622931148.55378-CDS-F-distichus_contig97000:1301..1403Fucus distichus monoicousCDSF-distichus_contig97000 1302..1403 +
1690886179.3045406-CDS-F-distichus_contig97000:1301..14031690886179.3045406-CDS-F-distichus_contig97000:1301..1403Fucus distichus monoicousCDSF-distichus_contig97000 1302..1403 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig97000.19153.1prot_F-distichus_contig97000.19153.1Fucus distichus monoicouspolypeptideF-distichus_contig97000 1302..1403 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig97000.19153.1

>prot_F-distichus_contig97000.19153.1 ID=prot_F-distichus_contig97000.19153.1|Name=mRNA_F-distichus_contig97000.19153.1|organism=Fucus distichus monoicous|type=polypeptide|length=34bp
WYCERARELDARAGQLRHASVMCELGAARVFVGG
back to top

mRNA from alignment at F-distichus_contig97000:1302..1403+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig97000.19153.1 ID=mRNA_F-distichus_contig97000.19153.1|Name=mRNA_F-distichus_contig97000.19153.1|organism=Fucus distichus monoicous|type=mRNA|length=102bp|location=Sequence derived from alignment at F-distichus_contig97000:1302..1403+ (Fucus distichus monoicous)
TGGTACTGCGAGCGTGCGCGCGAGCTGGACGCCCGAGCGGGACAGCTCCG
CCACGCGTCGGTGATGTGCGAGCTCGGGGCGGCTCGCGTTTTCGTCGGCG
GT
back to top

Coding sequence (CDS) from alignment at F-distichus_contig97000:1302..1403+

>mRNA_F-distichus_contig97000.19153.1 ID=mRNA_F-distichus_contig97000.19153.1|Name=mRNA_F-distichus_contig97000.19153.1|organism=Fucus distichus monoicous|type=CDS|length=204bp|location=Sequence derived from alignment at F-distichus_contig97000:1302..1403+ (Fucus distichus monoicous)
TGGTACTGCGAGCGTGCGCGCGAGCTGGACGCCCGAGCGGGACAGCTCCG
CCACGCGTCGGTGATGTGCGAGCTCGGGGCGGCTCGCGTTTTCGTCGGCG
GTTGGTACTGCGAGCGTGCGCGCGAGCTGGACGCCCGAGCGGGACAGCTC
CGCCACGCGTCGGTGATGTGCGAGCTCGGGGCGGCTCGCGTTTTCGTCGG
CGGT
back to top