mRNA_F-distichus_contig9695.19144.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9695.19144.1
Unique NamemRNA_F-distichus_contig9695.19144.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9695.19144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9695contigF-distichus_contig9695:8574..9037 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_000440.1
Exons1
Model size466
Cds size462
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.5117052-CDS-F-distichus_contig9695:8573..90351622931147.5117052-CDS-F-distichus_contig9695:8573..9035Fucus distichus monoicousCDSF-distichus_contig9695 8574..9035 +
1690886178.787241-CDS-F-distichus_contig9695:8573..90351690886178.787241-CDS-F-distichus_contig9695:8573..9035Fucus distichus monoicousCDSF-distichus_contig9695 8574..9035 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9695.19144.1prot_F-distichus_contig9695.19144.1Fucus distichus monoicouspolypeptideF-distichus_contig9695 8574..9035 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9695.19144.1

>prot_F-distichus_contig9695.19144.1 ID=prot_F-distichus_contig9695.19144.1|Name=mRNA_F-distichus_contig9695.19144.1|organism=Fucus distichus monoicous|type=polypeptide|length=154bp
LASRGLADSSVKAKTLAAASLTATVSAQDEEGAVASAAEARSTTRDASRQ
RYPGVLGIRRYQSSTNRETSKDRSAQIGGSGNKVGFMIAFREETDVELGT
KHHLTGTSLNGKGGGEATKQDREYFPGNSSWQDARFFRGDSDHAGWRVTD
RGNP
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mRNA from alignment at F-distichus_contig9695:8574..9037+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9695.19144.1 ID=mRNA_F-distichus_contig9695.19144.1|Name=mRNA_F-distichus_contig9695.19144.1|organism=Fucus distichus monoicous|type=mRNA|length=464bp|location=Sequence derived from alignment at F-distichus_contig9695:8574..9037+ (Fucus distichus monoicous)
TTGGCGTCGCGAGGTCTAGCTGATTCTTCTGTGAAGGCCAAAACTCTTGC
GGCAGCTTCATTAACAGCGACCGTCTCGGCACAGGACGAAGAGGGCGCCG
TTGCTTCGGCAGCAGAAGCAAGGAGCACGACTCGTGATGCTAGTCGGCAG
CGCTATCCGGGAGTGTTGGGCATTCGACGTTATCAGAGCAGTACCAATAG
AGAAACGAGCAAGGATCGCAGTGCTCAGATTGGAGGAAGCGGCAACAAGG
TGGGGTTTATGATAGCTTTCCGAGAGGAAACGGACGTTGAGCTCGGAACC
AAGCATCATCTCACTGGTACCAGTTTGAACGGAAAAGGGGGAGGTGAAGC
CACCAAGCAGGACAGAGAATATTTCCCGGGAAACTCGAGCTGGCAAGATG
CTCGCTTTTTCAGAGGCGACTCTGACCATGCGGGGTGGCGAGTTACCGAT
AGGGGGAATCCGAT
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Coding sequence (CDS) from alignment at F-distichus_contig9695:8574..9037+

>mRNA_F-distichus_contig9695.19144.1 ID=mRNA_F-distichus_contig9695.19144.1|Name=mRNA_F-distichus_contig9695.19144.1|organism=Fucus distichus monoicous|type=CDS|length=924bp|location=Sequence derived from alignment at F-distichus_contig9695:8574..9037+ (Fucus distichus monoicous)
TTGGCGTCGCGAGGTCTAGCTGATTCTTCTGTGAAGGCCAAAACTCTTGC
GGCAGCTTCATTAACAGCGACCGTCTCGGCACAGGACGAAGAGGGCGCCG
TTGCTTCGGCAGCAGAAGCAAGGAGCACGACTCGTGATGCTAGTCGGCAG
CGCTATCCGGGAGTGTTGGGCATTCGACGTTATCAGAGCAGTACCAATAG
AGAAACGAGCAAGGATCGCAGTGCTCAGATTGGAGGAAGCGGCAACAAGG
TGGGGTTTATGATAGCTTTCCGAGAGGAAACGGACGTTGAGCTCGGAACC
AAGCATCATCTCACTGGTACCAGTTTGAACGGAAAAGGGGGAGGTGAAGC
CACCAAGCAGGACAGAGAATATTTCCCGGGAAACTCGAGCTGGCAAGATG
CTCGCTTTTTCAGAGGCGACTCTGACCATGCGGGGTGGCGAGTTACCGAT
AGGGGGAATCCGTTGGCGTCGCGAGGTCTAGCTGATTCTTCTGTGAAGGC
CAAAACTCTTGCGGCAGCTTCATTAACAGCGACCGTCTCGGCACAGGACG
AAGAGGGCGCCGTTGCTTCGGCAGCAGAAGCAAGGAGCACGACTCGTGAT
GCTAGTCGGCAGCGCTATCCGGGAGTGTTGGGCATTCGACGTTATCAGAG
CAGTACCAATAGAGAAACGAGCAAGGATCGCAGTGCTCAGATTGGAGGAA
GCGGCAACAAGGTGGGGTTTATGATAGCTTTCCGAGAGGAAACGGACGTT
GAGCTCGGAACCAAGCATCATCTCACTGGTACCAGTTTGAACGGAAAAGG
GGGAGGTGAAGCCACCAAGCAGGACAGAGAATATTTCCCGGGAAACTCGA
GCTGGCAAGATGCTCGCTTTTTCAGAGGCGACTCTGACCATGCGGGGTGG
CGAGTTACCGATAGGGGGAATCCG
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