mRNA_F-distichus_contig96916.19142.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96916.19142.1
Unique NamemRNA_F-distichus_contig96916.19142.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig96916.19142.1 vs. uniprot
Match: D7G6K3_ECTSI (2-cys peroxiredoxin n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6K3_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 2.060e-37
Identity = 67/72 (93.06%), Postives = 70/72 (97.22%), Query Frame = 1
Query:   16 RIPLVADTTKEISADYGVLIPSLGVALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQYLVEHGEV 231
            RIPLVAD TKEISADYGVLIPSLG+ALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQ+L +HGEV
Sbjct:  168 RIPLVADPTKEISADYGVLIPSLGIALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQFLAKHGEV 239          
BLAST of mRNA_F-distichus_contig96916.19142.1 vs. uniprot
Match: A0A6V1NN04_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V1NN04_HETAK)

HSP 1 Score: 115 bits (288), Expect = 4.880e-30
Identity = 51/72 (70.83%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   16 RIPLVADTTKEISADYGVLIPSLGVALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQYLVEHGEV 231
            +IP+VAD TK ISADYGVL+  +G+ALRGLF+INPEG+LEQ+T+NNL +GR VDETLRL+QA Q++ EHGEV
Sbjct:  159 QIPIVADVTKAISADYGVLLEDIGIALRGLFLINPEGVLEQITVNNLPVGRSVDETLRLLQAFQFVAEHGEV 230          
BLAST of mRNA_F-distichus_contig96916.19142.1 vs. uniprot
Match: A0A835YLA5_9STRA (2-cys peroxiredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLA5_9STRA)

HSP 1 Score: 115 bits (289), Expect = 3.160e-29
Identity = 53/72 (73.61%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   16 RIPLVADTTKEISADYGVLIPSLGVALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQYLVEHGEV 231
            +IPLVADTTK I+ADYGVLI  LG+ALRGLFIINP+G+LEQ+TIN L +GR VDETLRL+ A+Q++ EHGEV
Sbjct:  167 KIPLVADTTKSIAADYGVLIQDLGIALRGLFIINPDGVLEQITINGLPVGRSVDETLRLLAAYQFVAEHGEV 238          
BLAST of mRNA_F-distichus_contig96916.19142.1 vs. uniprot
Match: A0A7S3UWW5_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UWW5_HETAK)

HSP 1 Score: 115 bits (288), Expect = 4.110e-29
Identity = 51/72 (70.83%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   16 RIPLVADTTKEISADYGVLIPSLGVALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQYLVEHGEV 231
            +IP+VAD TK ISADYGVL+  +G+ALRGLF+INPEG+LEQ+T+NNL +GR VDETLRL+QA Q++ EHGEV
Sbjct:  159 QIPIVADVTKAISADYGVLLEDIGIALRGLFLINPEGVLEQITVNNLPVGRSVDETLRLLQAFQFVAEHGEV 230          
BLAST of mRNA_F-distichus_contig96916.19142.1 vs. uniprot
Match: W7TZN7_9STRA (Thioredoxin-dependent peroxide reductase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZN7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.900e-28
Identity = 48/72 (66.67%), Postives = 65/72 (90.28%), Query Frame = 1
Query:   16 RIPLVADTTKEISADYGVLIPSLGVALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQYLVEHGEV 231
            +IPLVAD TK I+ADYGVL+  +G+ALRGLF+I+PEG+L+Q+T+NNL +GR+VDET+RLIQA Q++ +HGEV
Sbjct:   99 QIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEV 170          
BLAST of mRNA_F-distichus_contig96916.19142.1 vs. uniprot
Match: A0A649UZ07_9STRA (Thioredoxin peroxidase (Fragment) n=1 Tax=Opalina sp. OP10 TaxID=2666322 RepID=A0A649UZ07_9STRA)

HSP 1 Score: 108 bits (270), Expect = 1.090e-27
Identity = 49/72 (68.06%), Postives = 64/72 (88.89%), Query Frame = 1
Query:   16 RIPLVADTTKEISADYGVLIPSLGVALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQYLVEHGEV 231
            +IP+V+D TKEI+  YGVL+P LG+ALRGLFIINP+GILEQ+T+NNL +GR VDET+RLIQA Q++ ++GEV
Sbjct:  132 QIPIVSDLTKEIANQYGVLLPDLGIALRGLFIINPKGILEQITVNNLPVGRSVDETIRLIQALQFVEKYGEV 203          
BLAST of mRNA_F-distichus_contig96916.19142.1 vs. uniprot
Match: A0A2J8A9K1_9CHLO (Peroxiredoxin n=1 Tax=Tetrabaena socialis TaxID=47790 RepID=A0A2J8A9K1_9CHLO)

HSP 1 Score: 107 bits (267), Expect = 1.520e-27
Identity = 53/77 (68.83%), Postives = 62/77 (80.52%), Query Frame = 1
Query:   10 GCRIPLVADTTKEISADYGVLI---PSLGVALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQYLVEHGEV 231
            GC+ PLVAD TK+IS DYGVLI   P  GVALRGLFII+P GIL Q+TIN+L +GR VDETLRL++A Q+  EHGEV
Sbjct:   95 GCKYPLVADLTKQISKDYGVLIESGPDAGVALRGLFIISPTGILRQITINDLPVGRSVDETLRLVKAFQFTDEHGEV 171          
BLAST of mRNA_F-distichus_contig96916.19142.1 vs. uniprot
Match: A0A4D9CSY7_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CSY7_9STRA)

HSP 1 Score: 110 bits (276), Expect = 1.930e-27
Identity = 48/72 (66.67%), Postives = 65/72 (90.28%), Query Frame = 1
Query:   16 RIPLVADTTKEISADYGVLIPSLGVALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQYLVEHGEV 231
            +IPLVAD TK I+ADYGVL+  +G+ALRGLF+I+PEG+L+Q+T+NNL +GR+VDET+RLIQA Q++ +HGEV
Sbjct:  146 QIPLVADVTKTIAADYGVLLEDIGIALRGLFLIDPEGVLQQITVNNLPVGRNVDETIRLIQAFQFVAKHGEV 217          
BLAST of mRNA_F-distichus_contig96916.19142.1 vs. uniprot
Match: A0A4D9CMC6_9STRA (Thioredoxin domain-containing protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CMC6_9STRA)

HSP 1 Score: 107 bits (268), Expect = 2.380e-27
Identity = 51/74 (68.92%), Postives = 61/74 (82.43%), Query Frame = 1
Query:   10 GCRIPLVADTTKEISADYGVLIPSLGVALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQYLVEHGEV 231
            G   PL++D TKEI+ DYGVLIP  GVALRGLFII+P GIL Q+TIN+L IGRDVDETLRL+QA  ++ +HGEV
Sbjct:   84 GLNFPLISDLTKEIACDYGVLIPEEGVALRGLFIIDPHGILRQITINDLPIGRDVDETLRLVQAIDFVDKHGEV 157          
BLAST of mRNA_F-distichus_contig96916.19142.1 vs. uniprot
Match: A8JIT5_CHLRE (Thioredoxin-dependent peroxiredoxin (Fragment) n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A8JIT5_CHLRE)

HSP 1 Score: 106 bits (264), Expect = 3.100e-27
Identity = 51/72 (70.83%), Postives = 61/72 (84.72%), Query Frame = 1
Query:   16 RIPLVADTTKEISADYGVLIPSLGVALRGLFIINPEGILEQVTINNLGIGRDVDETLRLIQAHQYLVEHGEV 231
            +IP++ADTTK+ISA YGVLI  LGVALRGLFIINP+G+++ VTIN+L IGR VDE LR +QA QY  EHGEV
Sbjct:   88 QIPILADTTKDISARYGVLIEKLGVALRGLFIINPQGVVQHVTINDLPIGRSVDEALRTLQAIQYHAEHGEV 159          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96916.19142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G6K3_ECTSI2.060e-3793.062-cys peroxiredoxin n=1 Tax=Ectocarpus siliculosus... [more]
A0A6V1NN04_HETAK4.880e-3070.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A835YLA5_9STRA3.160e-2973.612-cys peroxiredoxin n=1 Tax=Tribonema minus TaxID=... [more]
A0A7S3UWW5_HETAK4.110e-2970.83Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
W7TZN7_9STRA1.900e-2866.67Thioredoxin-dependent peroxide reductase n=1 Tax=N... [more]
A0A649UZ07_9STRA1.090e-2768.06Thioredoxin peroxidase (Fragment) n=1 Tax=Opalina ... [more]
A0A2J8A9K1_9CHLO1.520e-2768.83Peroxiredoxin n=1 Tax=Tetrabaena socialis TaxID=47... [more]
A0A4D9CSY7_9STRA1.930e-2766.67Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A4D9CMC6_9STRA2.380e-2768.92Thioredoxin domain-containing protein n=1 Tax=Nann... [more]
A8JIT5_CHLRE3.100e-2770.83Thioredoxin-dependent peroxiredoxin (Fragment) n=1... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96916contigF-distichus_contig96916:254..879 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score136.7
Seed ortholog evalue4.5e-30
Seed eggNOG ortholog2880.D7G6K3
KEGG rclassRC01003,RC01872
KEGG koko:K03386,ko:K03671,ko:K11186,ko:K13279,ko:K20011
KEGG ReactionR08360,R08362
KEGG Pathwayko00480,ko01100,ko04146,ko04214,ko04621,ko05418,map00480,map01100,map04146,map04214,map04621,map05418
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0004791,GO:0004857,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006109,GO:0006950,GO:0006979,GO:0008047,GO:0008150,GO:0008152,GO:0009314,GO:0009416,GO:0009507,GO:0009532,GO:0009534,GO:0009536,GO:0009570,GO:0009579,GO:0009628,GO:0009636,GO:0009642,GO:0009987,GO:0015035,GO:0015036,GO:0016209,GO:0016491,GO:0016651,GO:0016667,GO:0016668,GO:0016671,GO:0019222,GO:0019725,GO:0019904,GO:0030234,GO:0031976,GO:0031984,GO:0033554,GO:0034599,GO:0042221,GO:0042592,GO:0043085,GO:0043086,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044092,GO:0044093,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045454,GO:0047134,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051716,GO:0055114,GO:0065007,GO:0065008,GO:0065009,GO:0070887,GO:0080090,GO:0097237,GO:0098754,GO:0098772,GO:0098869,GO:1990748
EggNOG free text desc.peroxiredoxin activity
EggNOG OGsCOG0450@1,COG0526@1,KOG0852@2759,KOG0907@2759
EC1.11.1.15
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03110,ko04147
Exons2
Model size231
Cds size231
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.36864-CDS-F-distichus_contig96916:253..3461622931147.36864-CDS-F-distichus_contig96916:253..346Fucus distichus monoicousCDSF-distichus_contig96916 254..346 -
1690886178.7373111-CDS-F-distichus_contig96916:253..3461690886178.7373111-CDS-F-distichus_contig96916:253..346Fucus distichus monoicousCDSF-distichus_contig96916 254..346 -
1622931147.384577-CDS-F-distichus_contig96916:741..8791622931147.384577-CDS-F-distichus_contig96916:741..879Fucus distichus monoicousCDSF-distichus_contig96916 742..879 -
1690886178.7556705-CDS-F-distichus_contig96916:741..8791690886178.7556705-CDS-F-distichus_contig96916:741..879Fucus distichus monoicousCDSF-distichus_contig96916 742..879 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96916.19142.1prot_F-distichus_contig96916.19142.1Fucus distichus monoicouspolypeptideF-distichus_contig96916 254..879 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96916.19142.1

>prot_F-distichus_contig96916.19142.1 ID=prot_F-distichus_contig96916.19142.1|Name=mRNA_F-distichus_contig96916.19142.1|organism=Fucus distichus monoicous|type=polypeptide|length=77bp
MGAGCRIPLVADTTKEISADYGVLIPSLGVALRGLFIINPEGILEQVTIN
NLGIGRDVDETLRLIQAHQYLVEHGEV
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mRNA from alignment at F-distichus_contig96916:254..879-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96916.19142.1 ID=mRNA_F-distichus_contig96916.19142.1|Name=mRNA_F-distichus_contig96916.19142.1|organism=Fucus distichus monoicous|type=mRNA|length=626bp|location=Sequence derived from alignment at F-distichus_contig96916:254..879- (Fucus distichus monoicous)
ATGGGCGCTGGTTGCAGGATACCTTTGGTGGCGGATACGACAAAGGAAAT CTCTGCGGACTACGGCGTGCTCATCCCTTCGCTCGGTGTGGCGCTTCGAG GGCTGTTCATCATCAACCCCGAGGGCATCTTGGAGCAGGTGATGCTGTAG TGACTTCGTCCAACCGAAAATCGCAAATCGTGGAGCAGGTGACGGAAGGG AGCCAAGCAATCACCAACAAGGACAGGGATATTATAATATTTATTTGAAC AGTGTCCTCTCAACTATTAATTAGTAATGGGAAAGGGCAAATAATTGGAG CAGGTAGCACAATGATATTTAGTGTAATAGGAAACCAAGGAGATCTCCAA AACGTATCCCGGAGGTGAAAGACCTCGTGTATATCATTACTTTTTTAGCA TTCGTGCCTCCCACGATTTTTTTATTTTTATTTTTCGGTTGCCCGCGATC TGGTCCCACGAAAGTGTTTACATGTTGATGGTTTGCTGCAGACTGACATG GCACGGCCACGTACGGTCGTTGATGGGTAACAGGTGACGATCAACAACCT CGGCATCGGGCGCGATGTGGACGAGACCCTCCGCCTCATCCAGGCCCACC AGTACCTCGTCGAGCACGGCGAGGTA
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Coding sequence (CDS) from alignment at F-distichus_contig96916:254..879-

>mRNA_F-distichus_contig96916.19142.1 ID=mRNA_F-distichus_contig96916.19142.1|Name=mRNA_F-distichus_contig96916.19142.1|organism=Fucus distichus monoicous|type=CDS|length=462bp|location=Sequence derived from alignment at F-distichus_contig96916:254..879- (Fucus distichus monoicous)
ATGGGCGCTGGTTGCAGGATACCTTTGGTGGCGGATACGACAAAGGAAAT
CTCTGCGGACTACGGCGTGCTCATCCCTTCGCTCGGTGTGGCGCTTCGAG
GGCTGTTCATCATCAACCCCGAGGGCATCTTGGAGCAGATGGGCGCTGGT
TGCAGGATACCTTTGGTGGCGGATACGACAAAGGAAATCTCTGCGGACTA
CGGCGTGCTCATCCCTTCGCTCGGTGTGGCGCTTCGAGGGCTGTTCATCA
TCAACCCCGAGGGCATCTTGGAGCAGGTGACGATCAACAACCTCGGCATC
GGGCGCGATGTGGACGAGACCCTCCGCCTCATCCAGGCCCACCAGTACCT
CGTCGAGCACGGCGAGGTAGTGACGATCAACAACCTCGGCATCGGGCGCG
ATGTGGACGAGACCCTCCGCCTCATCCAGGCCCACCAGTACCTCGTCGAG
CACGGCGAGGTA
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