mRNA_F-distichus_contig96912.19141.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96912.19141.1
Unique NamemRNA_F-distichus_contig96912.19141.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig96912.19141.1 vs. uniprot
Match: D7FKB4_ECTSI (B30.2/SPRY domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKB4_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 2.470e-27
Identity = 53/70 (75.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query:    1 SFGPGDVIGCGLDYSVGDDSADIFFTINGSRYLGG--AFHGVRGSFYPTVGIDSACPVRINLGAEPFEFD 204
            SFG GDV+GCGLDYSVG D+ADIFFT+NG    GG  AF GVRG+FYPTVG+DSACPVRINLG EPF  D
Sbjct:  548 SFGAGDVVGCGLDYSVGGDAADIFFTLNGELLNGGSAAFRGVRGTFYPTVGVDSACPVRINLGEEPFRLD 617          
BLAST of mRNA_F-distichus_contig96912.19141.1 vs. uniprot
Match: A0A835ZEA9_9STRA (B30.2/SPRY domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEA9_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 4.470e-19
Identity = 51/70 (72.86%), Postives = 54/70 (77.14%), Query Frame = 1
Query:    1 SFGPGDVIGCGLDYSVGDD-SADIFFTINGSRYLGGAFHGVR-GSFYPTVGIDSACPVRINLG-AEPFEF 201
            +FG GDV+GCGLDYS G    ADIFFT+NG RYLG AF GVR G  YPTVGIDSA PVRINLG A PF F
Sbjct: 1342 TFGRGDVVGCGLDYSHGGGVCADIFFTLNG-RYLGVAFAGVRAGGLYPTVGIDSAAPVRINLGGAAPFAF 1410          
BLAST of mRNA_F-distichus_contig96912.19141.1 vs. uniprot
Match: A0A7S0CWD3_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0CWD3_9EUKA)

HSP 1 Score: 71.2 bits (173), Expect = 2.390e-13
Identity = 37/69 (53.62%), Postives = 48/69 (69.57%), Query Frame = 1
Query:    1 SFGPGDVIGCGLDYSVGDDSADIFFTINGSRYLGGAFHGVR-GSFYPTVGIDSACPVRINLGAE-PFEF 201
            +FGPGDV+GCG+DY+    +  IFFT NG+ +LG AF  V  G +YP VG+D+ CP R+N G   PFEF
Sbjct:  109 AFGPGDVVGCGIDYT----NRSIFFTKNGA-FLGVAFEDVLPGHYYPVVGVDTRCPFRVNFGINRPFEF 172          
BLAST of mRNA_F-distichus_contig96912.19141.1 vs. uniprot
Match: A0A4D9CNA6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CNA6_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 7.490e-13
Identity = 40/81 (49.38%), Postives = 47/81 (58.02%), Query Frame = 1
Query:    4 FGPGDVIGCGLDYSVGDDSADIFFTINGSRYLGGAFH--------------GVRGSFYPTVGIDSACPVRINLGAEPFEFD 204
            +GPGDV+GCGLDY     S +IFFT+NG  YLG AF                 +   YPTVGIDS  PV++N G EPF FD
Sbjct:  601 YGPGDVVGCGLDYR----SKEIFFTLNG-EYLGVAFKVGEEGXXXXXXXXXXAKAPLYPTVGIDSLHPVQLNFGEEPFVFD 676          
BLAST of mRNA_F-distichus_contig96912.19141.1 vs. uniprot
Match: A0A7S1YBN1_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1YBN1_9STRA)

HSP 1 Score: 68.6 bits (166), Expect = 6.620e-12
Identity = 39/73 (53.42%), Postives = 48/73 (65.75%), Query Frame = 1
Query:    1 SFGPGDVIGCGLDYSVGDDSADIFFTINGSRYLGGAFHGV----RGSFYPTVGIDSACPVRINLGA-EPFEFD 204
            SFG GDV+GCG+DYS    +  IFFT+NG ++LG  +  +    R   YPTVGID+ CPV  N G  EPFEFD
Sbjct:  477 SFGQGDVVGCGVDYS----NNGIFFTLNG-KFLGYGWVNLQELSRLELYPTVGIDTNCPVHTNFGTTEPFEFD 544          
BLAST of mRNA_F-distichus_contig96912.19141.1 vs. uniprot
Match: A0A7S2MZU7_9STRA (Hypothetical protein n=1 Tax=Helicotheca tamesis TaxID=374047 RepID=A0A7S2MZU7_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 2.310e-11
Identity = 36/73 (49.32%), Postives = 46/73 (63.01%), Query Frame = 1
Query:    1 SFGPGDVIGCGLDYSVGDDSADIFFTINGSRYLGGAFHGV-----RGSFYPTVGIDSACPVRINLGAEPFEFD 204
            +FG  D +GCG+DYS    S  IFFT NG  +LG AF  +      G  YPTVG+D+ CP+ IN G +PFEF+
Sbjct:  163 TFGVYDTVGCGIDYS----SKSIFFTRNG-EFLGFAFAELDDSVLEGGLYPTVGVDTNCPLFINFGEKPFEFN 230          
BLAST of mRNA_F-distichus_contig96912.19141.1 vs. uniprot
Match: K0SCU3_THAOC (B30.2/SPRY domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SCU3_THAOC)

HSP 1 Score: 67.0 bits (162), Expect = 2.320e-11
Identity = 36/71 (50.70%), Postives = 44/71 (61.97%), Query Frame = 1
Query:    4 FGPGDVIGCGLDYSVGDDSADIFFTINGSRYLGGAFHGV-----RGSFYPTVGIDSACPVRINLGAEPFEF 201
            FGPGD +GCGLDY+    S  IFF  NG  +LG AF  V     +   YPTVG+DS CP+ +N G  PF+F
Sbjct:  637 FGPGDNVGCGLDYA----SRRIFFCKNG-EFLGHAFDRVDERMIKAGLYPTVGLDSECPIFVNYGFRPFKF 702          
BLAST of mRNA_F-distichus_contig96912.19141.1 vs. uniprot
Match: A0A7S0K7F3_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0K7F3_CAFRO)

HSP 1 Score: 63.2 bits (152), Expect = 7.170e-11
Identity = 41/81 (50.62%), Postives = 50/81 (61.73%), Query Frame = 1
Query:    1 SFGPGDVIGCGLDY-------SVGDDS--ADIFFTINGSRYLGGAFHGVRGS--FYPTVGIDSACPVRINLGA---EPFEF 201
            +FGPGDV+GCGLD        S G DS  A IFFT+NG R +G AF  V  +  ++P VGID   PVR+N G+   EPF F
Sbjct:    9 AFGPGDVVGCGLDTLPCLPTDSRGFDSSAARIFFTLNG-RMVGYAFEAVDAARRWHPVVGIDGPAPVRVNFGSDAREPFAF 88          
BLAST of mRNA_F-distichus_contig96912.19141.1 vs. uniprot
Match: A0A7S4S3F7_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S3F7_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.510e-10
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 SFGPGDVIGCGLDYSVGDDSADIFFTINGSRYLGGAF-----HGVRGSFYPTVGIDSACPVRINLGAEPFEFD 204
            +FG  D +GCG+DY        +FFT+NG ++L  AF       +R   YPTVG+D+ CP+ IN G +PFEFD
Sbjct:  632 TFGVNDTVGCGIDYKA----KSVFFTLNG-KFLVFAFTQLSVSTLRKGLYPTVGVDTNCPLFINFGEKPFEFD 699          
BLAST of mRNA_F-distichus_contig96912.19141.1 vs. uniprot
Match: A0A7S4S4K4_9STRA (Hypothetical protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4S4K4_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.520e-10
Identity = 33/73 (45.21%), Postives = 45/73 (61.64%), Query Frame = 1
Query:    1 SFGPGDVIGCGLDYSVGDDSADIFFTINGSRYLGGAF-----HGVRGSFYPTVGIDSACPVRINLGAEPFEFD 204
            +FG  D +GCG+DY        +FFT+NG ++L  AF       +R   YPTVG+D+ CP+ IN G +PFEFD
Sbjct:  705 TFGVNDTVGCGIDYKA----KSVFFTLNG-KFLVFAFTQLSVSTLRKGLYPTVGVDTNCPLFINFGEKPFEFD 772          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96912.19141.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FKB4_ECTSI2.470e-2775.71B30.2/SPRY domain-containing protein n=2 Tax=Ectoc... [more]
A0A835ZEA9_9STRA4.470e-1972.86B30.2/SPRY domain-containing protein n=1 Tax=Tribo... [more]
A0A7S0CWD3_9EUKA2.390e-1353.62Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]
A0A4D9CNA6_9STRA7.490e-1349.38Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A7S1YBN1_9STRA6.620e-1253.42Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A7S2MZU7_9STRA2.310e-1149.32Hypothetical protein n=1 Tax=Helicotheca tamesis T... [more]
K0SCU3_THAOC2.320e-1150.70B30.2/SPRY domain-containing protein n=1 Tax=Thala... [more]
A0A7S0K7F3_CAFRO7.170e-1150.62Hypothetical protein (Fragment) n=1 Tax=Cafeteria ... [more]
A0A7S4S3F7_9STRA1.510e-1045.21Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]
A0A7S4S4K4_9STRA1.520e-1045.21Hypothetical protein n=1 Tax=Ditylum brightwellii ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96912contigF-distichus_contig96912:1664..2164 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score112.1
Seed ortholog evalue1e-22
Seed eggNOG ortholog2880.D7FKB4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsKOG1477@1,KOG1477@2759
COG Functional cat.F
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.303108-CDS-F-distichus_contig96912:1663..17781622931147.303108-CDS-F-distichus_contig96912:1663..1778Fucus distichus monoicousCDSF-distichus_contig96912 1664..1778 -
1690886178.7061172-CDS-F-distichus_contig96912:1663..17781690886178.7061172-CDS-F-distichus_contig96912:1663..1778Fucus distichus monoicousCDSF-distichus_contig96912 1664..1778 -
1622931147.3240309-CDS-F-distichus_contig96912:2075..21641622931147.3240309-CDS-F-distichus_contig96912:2075..2164Fucus distichus monoicousCDSF-distichus_contig96912 2076..2164 -
1690886178.721261-CDS-F-distichus_contig96912:2075..21641690886178.721261-CDS-F-distichus_contig96912:2075..2164Fucus distichus monoicousCDSF-distichus_contig96912 2076..2164 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96912.19141.1prot_F-distichus_contig96912.19141.1Fucus distichus monoicouspolypeptideF-distichus_contig96912 1664..2164 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96912.19141.1

>prot_F-distichus_contig96912.19141.1 ID=prot_F-distichus_contig96912.19141.1|Name=mRNA_F-distichus_contig96912.19141.1|organism=Fucus distichus monoicous|type=polypeptide|length=68bp
SFGPGDVIGCGLDYSVGDDSADIFFTINGSRYLGGAFHGVRGSFYPTVGI
DSACPVRINLGAEPFEFD
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mRNA from alignment at F-distichus_contig96912:1664..2164-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96912.19141.1 ID=mRNA_F-distichus_contig96912.19141.1|Name=mRNA_F-distichus_contig96912.19141.1|organism=Fucus distichus monoicous|type=mRNA|length=501bp|location=Sequence derived from alignment at F-distichus_contig96912:1664..2164- (Fucus distichus monoicous)
TCCTTCGGCCCAGGCGACGTGATCGGGTGCGGGCTGGACTACAGTGTCGG GGACGATTCCGCCGACATCTTCTTCACGATCAACGGCAGGTGAAGGAAGA ACAGTACACTTTCATCACCCTAACATCAATATCAACACGTACCCATTATA GTACAGTCGTGGGGTGTGGGAGTTCCTATTGATAAACGTCCATCGAGTCA AACAAGCACCCGTGCGAACAAACCCCGGGAGGGAAGGGTGTATATATAAC CAACGATCGCAGGCAGGTTGGGACGCGTCGATGCTGTACTGTAGTACGTT GGTGGGTCTCCCCATGCTGACCGCTTGCATGTTTTGTTGTTAAATTTTAT CTATGTGTAATGTACTGGGGGATGGGGGATGGAAAGCAGGTACCTGGGCG GGGCGTTTCACGGTGTGAGGGGATCGTTCTATCCCACCGTCGGCATCGAC TCGGCATGCCCCGTGAGGATCAACCTCGGCGCGGAGCCCTTTGAGTTCGA C
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Coding sequence (CDS) from alignment at F-distichus_contig96912:1664..2164-

>mRNA_F-distichus_contig96912.19141.1 ID=mRNA_F-distichus_contig96912.19141.1|Name=mRNA_F-distichus_contig96912.19141.1|organism=Fucus distichus monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at F-distichus_contig96912:1664..2164- (Fucus distichus monoicous)
TCCTTCGGCCCAGGCGACGTGATCGGGTGCGGGCTGGACTACAGTGTCGG
GGACGATTCCGCCGACATCTTCTTCACGATCAACGGCAGTCCTTCGGCCC
AGGCGACGTGATCGGGTGCGGGCTGGACTACAGTGTCGGGGACGATTCCG
CCGACATCTTCTTCACGATCAACGGCAGCAGGTACCTGGGCGGGGCGTTT
CACGGTGTGAGGGGATCGTTCTATCCCACCGTCGGCATCGACTCGGCATG
CCCCGTGAGGATCAACCTCGGCGCGGAGCCCTTTGAGTTCGACCAGGTAC
CTGGGCGGGGCGTTTCACGGTGTGAGGGGATCGTTCTATCCCACCGTCGG
CATCGACTCGGCATGCCCCGTGAGGATCAACCTCGGCGCGGAGCCCTTTG
AGTTCGAC
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