mRNA_F-distichus_contig96883.19139.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96883.19139.1
Unique NamemRNA_F-distichus_contig96883.19139.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96883.19139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96883contigF-distichus_contig96883:126..2015 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-14_003310.1
Exons4
Model size1004
Cds size351
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96883.19139.1prot_F-distichus_contig96883.19139.1Fucus distichus monoicouspolypeptideF-distichus_contig96883 743..1979 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.0815969-UTR-F-distichus_contig96883:125..7421622931147.0815969-UTR-F-distichus_contig96883:125..742Fucus distichus monoicousUTRF-distichus_contig96883 126..742 -
1690886178.609859-UTR-F-distichus_contig96883:125..7421690886178.609859-UTR-F-distichus_contig96883:125..742Fucus distichus monoicousUTRF-distichus_contig96883 126..742 -
1622931147.1961827-UTR-F-distichus_contig96883:1979..20151622931147.1961827-UTR-F-distichus_contig96883:1979..2015Fucus distichus monoicousUTRF-distichus_contig96883 1980..2015 -
1690886178.6797867-UTR-F-distichus_contig96883:1979..20151690886178.6797867-UTR-F-distichus_contig96883:1979..2015Fucus distichus monoicousUTRF-distichus_contig96883 1980..2015 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931147.1014886-CDS-F-distichus_contig96883:742..8741622931147.1014886-CDS-F-distichus_contig96883:742..874Fucus distichus monoicousCDSF-distichus_contig96883 743..874 -
1690886178.621326-CDS-F-distichus_contig96883:742..8741690886178.621326-CDS-F-distichus_contig96883:742..874Fucus distichus monoicousCDSF-distichus_contig96883 743..874 -
1622931147.120044-CDS-F-distichus_contig96883:1092..12191622931147.120044-CDS-F-distichus_contig96883:1092..1219Fucus distichus monoicousCDSF-distichus_contig96883 1093..1219 -
1690886178.6337974-CDS-F-distichus_contig96883:1092..12191690886178.6337974-CDS-F-distichus_contig96883:1092..1219Fucus distichus monoicousCDSF-distichus_contig96883 1093..1219 -
1622931147.1495774-CDS-F-distichus_contig96883:1524..15991622931147.1495774-CDS-F-distichus_contig96883:1524..1599Fucus distichus monoicousCDSF-distichus_contig96883 1525..1599 -
1690886178.6458259-CDS-F-distichus_contig96883:1524..15991690886178.6458259-CDS-F-distichus_contig96883:1524..1599Fucus distichus monoicousCDSF-distichus_contig96883 1525..1599 -
1622931147.1658103-CDS-F-distichus_contig96883:1962..19791622931147.1658103-CDS-F-distichus_contig96883:1962..1979Fucus distichus monoicousCDSF-distichus_contig96883 1963..1979 -
1690886178.6642692-CDS-F-distichus_contig96883:1962..19791690886178.6642692-CDS-F-distichus_contig96883:1962..1979Fucus distichus monoicousCDSF-distichus_contig96883 1963..1979 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96883.19139.1

>prot_F-distichus_contig96883.19139.1 ID=prot_F-distichus_contig96883.19139.1|Name=mRNA_F-distichus_contig96883.19139.1|organism=Fucus distichus monoicous|type=polypeptide|length=117bp
MELARRFISDSEAFVREERDKMATKKATTVRYRKDLEKQVAETKARRMQL
EMNDTEFKLNSDIVKKLESDKELVAQVKQRMDSARGLDTHDGGNRGEMDR
GNETSIQRHLISSSAA*
back to top

mRNA from alignment at F-distichus_contig96883:126..2015-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96883.19139.1 ID=mRNA_F-distichus_contig96883.19139.1|Name=mRNA_F-distichus_contig96883.19139.1|organism=Fucus distichus monoicous|type=mRNA|length=1890bp|location=Sequence derived from alignment at F-distichus_contig96883:126..2015- (Fucus distichus monoicous)
AAGAACGCTACGAGGGAAAAGGCTCAGAGAGAAGATATGGAGCTCGCGCG
AAGGTGCGGCTGGACTCCGATCAGCGCATAAGGTTGAATCGAGGATATGA
CCTCAGACGTGTTGTTTGCGGTCCTTTACCCGATAAGGGCTAGGCTAGGC
AACCGCAACGTGATGTGTGGACCTTCGTTCGCAGTCGACAAGAGGCGTAA
GAGGACGGAAGGCGACGTGATGCGAAGTAGAAAAAAATGTTTTCTGGCTG
TTCTACTGTTTATTTAGTATATATATTTTCGTGTTGCTTTTCACGAGGGT
GCTCCGGCTTCATGCCTCGGAAACTTATCTCTGGGACACACGGATGACGT
CAAATGATGTGATAGTCTGAATCGATTATCTGGCCATGTCGGATCTGGCC
GCCACCCTCTTGAAAGGTTTATCAGTGACTCGGAGGCGTTCGTGCGGGAG
GAAAGGGACAAGATGGCAACGAAGAAGGCCACTACTGTTAGGTATGGCTT
CACCTACATGGCAGCAGCGTGAACGGCTGGGGGTCTCGTGGCTGCCCGGT
AAATCCCCTTGGGTCATTTTTCTGTACCTGGTATACGAATTCGTGGATCG
AGAGTCACGACGGGTTACTCACTCCTTGCGTGTAGCGAAGCGATAAAAAA
AGGGTGGGCTGGCGCAGATTTGTATCTCCTTGGAGGAGGGATGTCTGTAC
GTATACTAGCAGCTACAAAGAAAAGAAAACAAACTGAAACAAGACGTGTG
TGGTCTTTATGGACCCAAATGGATACGACGTTGCGGGACTCAACAGGTAC
CGTAAAGACCTCGAGAAGCAAGTGGCGGAGACAAAGGCCCGTCGCATGCA
GCTGGAAATGAACGACACAGAGTTCAAGCTGAACAGCGACATCGTCAAGA
AACTAGAGTCCGACAAAGAACTGGTAATAGAGGAGTGAAGAGAAATAGTC
GCCCTGGGCGAGTCCCGAGTGTTGCCGCGGGTCGAGATTGATCTACAGGC
CAAAGAAGATTAAATTTTGGTCGAGTCCGCGCACGAACAAGGATCTTCCT
TGAATCCGCATATCCCGATACATTTATAGCTGTACAGAGTAATCATGATG
GGGGCTGCTGGATGCATCCTCGCAACATGCGACTTCCTCAGGTTGCACAA
GTCAAGCAGAGAATGGACAGTGCGCGTGGGCTGGACACACACGATGGCGG
TAACCGAGGCGAGATGGACCGGGGCAATGAAACCAGCATCCAGCGCCACT
TGATCTCATCATCCGCCGCCTAGTGGCAGTGCATATTTTTAAATATTTTT
TTCCCGCCAAAAGCGGCACGAACTATTAATAAACTCGTGCGGAGAAACAT
GTACACCAAAATGGGTAATGCCCACAACTTTAATTGCGTTTGTTGGTGAA
AGAACAAGACGGTTCAGCGTCCCACCGCGTAGGCTGGATCCGTCGCTGCT
CTCGAGTGAGCTCTGGGTCCCTCCCTCCTCCCGCGACGGGCGTCACCAGT
GTCTCGAAAGTATTTCCTGCACTTTCGTTTTTCGCCTGTACGCCTCTCAA
ACGTGGCCCACCCGCATTTCGGAAAAAAACTACCAGGTAGCTTCTGACAG
TATACATGGTGTGCGGGCTGGCGGTGTAGGTATGATGGTGTCCCACGGCG
TTACCGTCGAGGTCGAGGTTTAGCCCTTCCTCACACCTCTTGTGGTTTAT
TTTGTTTTTTTAGACACGAAGTGACAAGAAGAGGACCGAGAATTTCAAAA
GGCTTCCGTCATTGGGTCGTTAGACGAAACGCTACGACGCGAGCGCCTCA
GGGGCCACGCAAGTGTGGACGAATTTGCGCGGGCGTTGCTTATTCTCCTT
GCCATCGCGCTCTCTAGGGGTGTGCTTTGTTGGGCTGGCA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig96883:126..2015-

>mRNA_F-distichus_contig96883.19139.1 ID=mRNA_F-distichus_contig96883.19139.1|Name=mRNA_F-distichus_contig96883.19139.1|organism=Fucus distichus monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at F-distichus_contig96883:126..2015- (Fucus distichus monoicous)
ATGGAGCTCGCGCGAAGATGGAGCTCGCGCGAAGGTTTATCAGTGACTCG
GAGGCGTTCGTGCGGGAGGAAAGGGACAAGATGGCAACGAAGAAGGCCAC
TACTGTTAGGTTTATCAGTGACTCGGAGGCGTTCGTGCGGGAGGAAAGGG
ACAAGATGGCAACGAAGAAGGCCACTACTGTTAGGTACCGTAAAGACCTC
GAGAAGCAAGTGGCGGAGACAAAGGCCCGTCGCATGCAGCTGGAAATGAA
CGACACAGAGTTCAAGCTGAACAGCGACATCGTCAAGAAACTAGAGTCCG
ACAAAGAACTGGTACCGTAAAGACCTCGAGAAGCAAGTGGCGGAGACAAA
GGCCCGTCGCATGCAGCTGGAAATGAACGACACAGAGTTCAAGCTGAACA
GCGACATCGTCAAGAAACTAGAGTCCGACAAAGAACTGGTTGCACAAGTC
AAGCAGAGAATGGACAGTGCGCGTGGGCTGGACACACACGATGGCGGTAA
CCGAGGCGAGATGGACCGGGGCAATGAAACCAGCATCCAGCGCCACTTGA
TCTCATCATCCGCCGCCTAGGTTGCACAAGTCAAGCAGAGAATGGACAGT
GCGCGTGGGCTGGACACACACGATGGCGGTAACCGAGGCGAGATGGACCG
GGGCAATGAAACCAGCATCCAGCGCCACTTGATCTCATCATCCGCCGCCT
AG
back to top