mRNA_F-distichus_contig96857.19135.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96857.19135.1
Unique NamemRNA_F-distichus_contig96857.19135.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig96857.19135.1 vs. uniprot
Match: A0A6H5KYE2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYE2_9PHAE)

HSP 1 Score: 325 bits (833), Expect = 2.400e-110
Identity = 153/168 (91.07%), Postives = 159/168 (94.64%), Query Frame = 1 
Query:    1 DMVHSTKMSGALKILERMVNQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFSTNRTRRKQQVTALAWNPHYPDLFAAAYGSYDFMHQGGGIVCCFSLKNTSNPEYTFSTESGVMCLDFHPVHNSLLAVGCHEGTVMVFDVRHKANHPIYSSTIKTGKHTDPVWQV 504
            DMVHS KM GALKILERMVNQNAEDEIFQDFKYWEDASD FREGEGSLLPLWRFST+RT+RKQ VTALAWNP YPDLFAAAYGSYDFM QG G+VCCFSLKNTS+PEYTF TESGVMCLDFHPVHNSLLAVGCH+GTVMVFDVRHKAN PIYSS+IKTGKHTDPVWQV
Sbjct:   22 DMVHSAKMGGALKILERMVNQNAEDEIFQDFKYWEDASDHFREGEGSLLPLWRFSTDRTKRKQ-VTALAWNPQYPDLFAAAYGSYDFMRQGSGMVCCFSLKNTSHPEYTFGTESGVMCLDFHPVHNSLLAVGCHDGTVMVFDVRHKANRPIYSSSIKTGKHTDPVWQV 188
[Close]
BLAST of mRNA_F-distichus_contig96857.19135.1 vs. uniprot
Match: D7FZ08_ECTSI (Putative, Dynein intermediate chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ08_ECTSI)

HSP 1 Score: 325 bits (833), Expect = 4.200e-106
Identity = 153/168 (91.07%), Postives = 159/168 (94.64%), Query Frame = 1 
Query:    1 DMVHSTKMSGALKILERMVNQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFSTNRTRRKQQVTALAWNPHYPDLFAAAYGSYDFMHQGGGIVCCFSLKNTSNPEYTFSTESGVMCLDFHPVHNSLLAVGCHEGTVMVFDVRHKANHPIYSSTIKTGKHTDPVWQV 504
            DMVHS KM GALKILERMVNQNAEDEIFQDFKYWEDASD FREGEGSLLPLWRFST+RT+RKQ VTALAWNP YPDLFAAAYGSYDFM QG G+VCCFSLKNTS+PEYTF TESGVMCLDFHPVHNSLLAVGCH+GTVMVFDVRHKAN PIYSS+IKTGKHTDPVWQV
Sbjct:  200 DMVHSAKMGGALKILERMVNQNAEDEIFQDFKYWEDASDHFREGEGSLLPLWRFSTDRTKRKQ-VTALAWNPQYPDLFAAAYGSYDFMRQGSGMVCCFSLKNTSHPEYTFGTESGVMCLDFHPVHNSLLAVGCHDGTVMVFDVRHKANRPIYSSSIKTGKHTDPVWQV 366
[Close]
BLAST of mRNA_F-distichus_contig96857.19135.1 vs. uniprot
Match: A0A812NQ83_SYMMI (Hypothetical protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812NQ83_SYMMI)

HSP 1 Score: 300 bits (767), Expect = 2.060e-96
Identity = 141/168 (83.93%), Postives = 152/168 (90.48%), Query Frame = 1 
Query:    1 DMVHSTKMSGALKILERMVNQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFSTNRTRRKQQVTALAWNPHYPDLFAAAYGSYDFMHQGGGIVCCFSLKNTSNPEYTFSTESGVMCLDFHPVHNSLLAVGCHEGTVMVFDVRHKANHPIYSSTIKTGKHTDPVWQV 504
            DMVHS KMS ALKILERMVNQNAEDEIFQDFKYWEDASD +R GEGSLLPLWRFST RT+RKQ VTA+ WNP YPDLFA AYGSYDFM QG G+VCCFSLKNTS+PEY FSTESGVMCLDFHP H SLLAVGC++GTVMVFDVR++ N PIYSS+I+TGKHTDPVWQV
Sbjct:  215 DMVHSQKMSNALKILERMVNQNAEDEIFQDFKYWEDASDWYRNGEGSLLPLWRFSTERTKRKQ-VTAIKWNPVYPDLFAVAYGSYDFMRQGSGMVCCFSLKNTSHPEYIFSTESGVMCLDFHPRHQSLLAVGCYDGTVMVFDVRNRVNRPIYSSSIRTGKHTDPVWQV 381
[Close]
BLAST of mRNA_F-distichus_contig96857.19135.1 vs. uniprot
Match: A0A482SQM2_9ARCH (Uncharacterized protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SQM2_9ARCH)

HSP 1 Score: 295 bits (755), Expect = 4.400e-96
Identity = 139/168 (82.74%), Postives = 149/168 (88.69%), Query Frame = 1 
Query:    1 DMVHSTKMSGALKILERMVNQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFSTNRTRRKQQVTALAWNPHYPDLFAAAYGSYDFMHQGGGIVCCFSLKNTSNPEYTFSTESGVMCLDFHPVHNSLLAVGCHEGTVMVFDVRHKANHPIYSSTIKTGKHTDPVWQV 504
            DMVHS KM+ ALKILERMVNQNAEDEIFQDFKYWED SD +R GEGSLLPLWRFST RT+RKQ VTAL WNP YPDLFA AYGSYDFM QG GIVCCFSLKNTS+PEY FST+SGVMCLDFHP + SLLAVGC++GTVMVFDVR K N  IYSS+I+TGKHTDPVWQV
Sbjct:  256 DMVHSAKMNNALKILERMVNQNAEDEIFQDFKYWEDQSDSYRNGEGSLLPLWRFSTERTKRKQ-VTALCWNPSYPDLFAVAYGSYDFMRQGSGIVCCFSLKNTSHPEYMFSTDSGVMCLDFHPNYQSLLAVGCYDGTVMVFDVRQKVNRAIYSSSIRTGKHTDPVWQV 422
[Close]
BLAST of mRNA_F-distichus_contig96857.19135.1 vs. uniprot
Match: A0A7S2CDX8_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CDX8_9STRA)

HSP 1 Score: 297 bits (761), Expect = 9.940e-95
Identity = 137/168 (81.55%), Postives = 152/168 (90.48%), Query Frame = 1 
Query:    1 DMVHSTKMSGALKILERMVNQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFSTNRTRRKQQVTALAWNPHYPDLFAAAYGSYDFMHQGGGIVCCFSLKNTSNPEYTFSTESGVMCLDFHPVHNSLLAVGCHEGTVMVFDVRHKANHPIYSSTIKTGKHTDPVWQV 504
            DMVHS KMS ALKILERM NQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRF T+RT+RKQ VTAL WNP YPDLFA  YGSYDFM QG G++CC+SLKNT++PEY FSTESGVMC++FHP H+SLLAVGC++GTVMV+DVR+K N PIY S+IKTGKHTDPVWQV
Sbjct:  257 DMVHSVKMSAALKILERMANQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFQTDRTKRKQ-VTALGWNPKYPDLFAVGYGSYDFMRQGSGMICCYSLKNTNHPEYIFSTESGVMCINFHPNHSSLLAVGCYDGTVMVYDVRNKMNRPIYMSSIKTGKHTDPVWQV 423
[Close]
BLAST of mRNA_F-distichus_contig96857.19135.1 vs. uniprot
Match: A0A7S3NDV2_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3NDV2_9STRA)

HSP 1 Score: 292 bits (748), Expect = 4.550e-94
Identity = 136/168 (80.95%), Postives = 151/168 (89.88%), Query Frame = 1 
Query:    1 DMVHSTKMSGALKILERMVNQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFSTNRTRRKQQVTALAWNPHYPDLFAAAYGSYDFMHQGGGIVCCFSLKNTSNPEYTFSTESGVMCLDFHPVHNSLLAVGCHEGTVMVFDVRHKANHPIYSSTIKTGKHTDPVWQV 504
            DMVHS +M  ALKILERMVNQN++DEIFQDFKYWEDASD FR+GEGSLLPLWRF T R++RKQ VTALAWN +YPDLFA  YGSYDFM QG G++CCFSLKNTSNPEYTF+TESGVMCLDFHP   SLLAVGC++GTVMVFDVR+K N PIY+S+IKTGKHTDPVWQV
Sbjct:  249 DMVHSQRMGNALKILERMVNQNSDDEIFQDFKYWEDASDTFRDGEGSLLPLWRFHTERSKRKQ-VTALAWNQNYPDLFAVGYGSYDFMRQGTGMICCFSLKNTSNPEYTFATESGVMCLDFHPEQCSLLAVGCYDGTVMVFDVRNKGNRPIYASSIKTGKHTDPVWQV 415
[Close]
BLAST of mRNA_F-distichus_contig96857.19135.1 vs. uniprot
Match: F0YGU7_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YGU7_AURAN)

HSP 1 Score: 293 bits (751), Expect = 9.900e-94
Identity = 136/169 (80.47%), Postives = 151/169 (89.35%), Query Frame = 1 
Query:    1 DMVHSTKMSGALKILERMVNQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFSTNRTRRKQQVTALAWNPHYPDLFAAAYGSYDFMHQGGGIVCCFSLKNTSNPEYTFSTESGVMCLDFHPVHNSLLAVGCHEGTVMVFDVRHKANHPIYSSTIKTGKHTDPVWQVR 507
            DMVHS +M  ALKILERMVNQNA+DEIFQDFKYWEDASD FR+GEGSLLPLWRF T R++RKQ VTALAWNP YPDLF+  YGSYDFM QG G+VCCFSLKNTS PEYTF+TESGVMCL+FHP H SLLAVGC++G VMV+DVRHK N PIY+S+IKTGKHTDPVWQV+
Sbjct:  207 DMVHSQRMGNALKILERMVNQNADDEIFQDFKYWEDASDAFRDGEGSLLPLWRFHTERSKRKQ-VTALAWNPKYPDLFSVGYGSYDFMRQGSGMVCCFSLKNTSYPEYTFTTESGVMCLNFHPEHCSLLAVGCYDGIVMVYDVRHKGNRPIYASSIKTGKHTDPVWQVQ 374
[Close]
BLAST of mRNA_F-distichus_contig96857.19135.1 vs. uniprot
Match: A0A835YM82_9STRA (Putative dynein intermediate chain n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YM82_9STRA)

HSP 1 Score: 292 bits (747), Expect = 6.300e-93
Identity = 135/168 (80.36%), Postives = 148/168 (88.10%), Query Frame = 1 
Query:    1 DMVHSTKMSGALKILERMVNQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFSTNRTRRKQQVTALAWNPHYPDLFAAAYGSYDFMHQGGGIVCCFSLKNTSNPEYTFSTESGVMCLDFHPVHNSLLAVGCHEGTVMVFDVRHKANHPIYSSTIKTGKHTDPVWQV 504
            D VHS KM G LK+LERM NQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFST RT++KQ VTAL WNP YPDLFA  YGSYDF+ QG G+V CFSLKNT +PEYT +TESGVMCLDFHP+H+SLLAVGC++GTVMVFDVR +   PIYSS+IKTGKHTDPVWQV
Sbjct:  228 DTVHSAKMGGVLKMLERMANQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFSTERTKKKQ-VTALCWNPRYPDLFAVGYGSYDFLRQGSGLVACFSLKNTGSPEYTLATESGVMCLDFHPLHHSLLAVGCYDGTVMVFDVRQRRGAPIYSSSIKTGKHTDPVWQV 394
[Close]
BLAST of mRNA_F-distichus_contig96857.19135.1 vs. uniprot
Match: F0YIN4_AURAN (cGMP-dependent protein kinase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIN4_AURAN)

HSP 1 Score: 293 bits (751), Expect = 4.570e-89
Identity = 136/169 (80.47%), Postives = 151/169 (89.35%), Query Frame = 1 
Query:    1 DMVHSTKMSGALKILERMVNQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFSTNRTRRKQQVTALAWNPHYPDLFAAAYGSYDFMHQGGGIVCCFSLKNTSNPEYTFSTESGVMCLDFHPVHNSLLAVGCHEGTVMVFDVRHKANHPIYSSTIKTGKHTDPVWQVR 507
            DMVHS +M  ALKILERMVNQNA+DEIFQDFKYWEDASD FR+GEGSLLPLWRF T R++RKQ VTALAWNP YPDLF+  YGSYDFM QG G+VCCFSLKNTS PEYTF+TESGVMCL+FHP H SLLAVGC++G VMV+DVRHK N PIY+S+IKTGKHTDPVWQV+
Sbjct:  308 DMVHSQRMGNALKILERMVNQNADDEIFQDFKYWEDASDAFRDGEGSLLPLWRFHTERSKRKQ-VTALAWNPKYPDLFSVGYGSYDFMRQGSGMVCCFSLKNTSYPEYTFTTESGVMCLNFHPEHCSLLAVGCYDGIVMVYDVRHKGNRPIYASSIKTGKHTDPVWQVQ 475
[Close]
BLAST of mRNA_F-distichus_contig96857.19135.1 vs. uniprot
Match: A0A7S2GPP1_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GPP1_9STRA)

HSP 1 Score: 282 bits (722), Expect = 9.430e-89
Identity = 130/168 (77.38%), Postives = 147/168 (87.50%), Query Frame = 1 
Query:    1 DMVHSTKMSGALKILERMVNQNAEDEIFQDFKYWEDASDQFREGEGSLLPLWRFSTNRTRRKQQVTALAWNPHYPDLFAAAYGSYDFMHQGGGIVCCFSLKNTSNPEYTFSTESGVMCLDFHPVHNSLLAVGCHEGTVMVFDVRHKANHPIYSSTIKTGKHTDPVWQV 504
            DMVHS KM+ ALKILERMVNQN+EDEIFQDF+YWEDASD FREGEGSLLPLWRF++++T+RKQ VTALAWNP Y DLFA  YGSYDFM QG G +CC+S KNT +PEY FSTE+GVMC+ FHP H+SLLA GC++GTVMVFDVR K N PIY S+IKTGKHTDPVWQV
Sbjct:  276 DMVHSVKMAEALKILERMVNQNSEDEIFQDFRYWEDASDAFREGEGSLLPLWRFTSDKTKRKQ-VTALAWNPKYTDLFAVGYGSYDFMRQGSGTICCYSFKNTGHPEYVFSTETGVMCVAFHPNHSSLLAAGCYDGTVMVFDVRTKGNRPIYMSSIKTGKHTDPVWQV 442
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96857.19135.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KYE2_9PHAE2.400e-11091.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZ08_ECTSI4.200e-10691.07Putative, Dynein intermediate chain n=1 Tax=Ectoca... [more]
A0A812NQ83_SYMMI2.060e-9683.93Hypothetical protein n=1 Tax=Symbiodinium microadr... [more]
A0A482SQM2_9ARCH4.400e-9682.74Uncharacterized protein n=1 Tax=archaeon TaxID=190... [more]
A0A7S2CDX8_9STRA9.940e-9581.55Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A7S3NDV2_9STRA4.550e-9480.95Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
F0YGU7_AURAN9.900e-9480.47Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A835YM82_9STRA6.300e-9380.36Putative dynein intermediate chain n=1 Tax=Tribone... [more]
F0YIN4_AURAN4.570e-8980.47cGMP-dependent protein kinase n=1 Tax=Aureococcus ... [more]
A0A7S2GPP1_9STRA9.430e-8977.38Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96857contigF-distichus_contig96857:6..1848 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score292.4
Seed ortholog evalue1.4e-76
Seed eggNOG ortholog44056.XP_009039581.1
Preferred nameDNAI1
KEGG koko:K10409,ko:K11143
KEGG Pathwayko05016,map05016
Hectar predicted targeting categoryother localisation
GOsGO:0000226,GO:0001578,GO:0003008,GO:0003341,GO:0003351,GO:0003674,GO:0003774,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005813,GO:0005815,GO:0005856,GO:0005858,GO:0005875,GO:0005929,GO:0005930,GO:0006928,GO:0006996,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007167,GO:0007169,GO:0007275,GO:0007368,GO:0007389,GO:0007507,GO:0007600,GO:0007605,GO:0008150,GO:0008286,GO:0009719,GO:0009725,GO:0009799,GO:0009855,GO:0009987,GO:0010033,GO:0010243,GO:0015630,GO:0016043,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0030286,GO:0030317,GO:0032501,GO:0032502,GO:0032838,GO:0032868,GO:0032869,GO:0032870,GO:0032991,GO:0034622,GO:0035082,GO:0036157,GO:0036158,GO:0040011,GO:0042221,GO:0042995,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043434,GO:0043933,GO:0044085,GO:0044422,GO:0044424,GO:0044430,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044463,GO:0044464,GO:0044782,GO:0045503,GO:0045504,GO:0048513,GO:0048731,GO:0048856,GO:0048870,GO:0050789,GO:0050794,GO:0050877,GO:0050896,GO:0050954,GO:0051179,GO:0051674,GO:0051716,GO:0060271,GO:0065003,GO:0065007,GO:0070286,GO:0070887,GO:0070925,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071840,GO:0072359,GO:0097014,GO:0097722,GO:0099568,GO:0120025,GO:0120031,GO:0120036,GO:0120038,GO:1901652,GO:1901653,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902494
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG1587@1,KOG1587@2759
Ec32 ortholog descriptionputative, Dynein intermediate chain
Ec32 orthologEc-06_002030.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04812
Exons4
Model size507
Cds size504
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96857.19135.1prot_F-distichus_contig96857.19135.1Fucus distichus monoicouspolypeptideF-distichus_contig96857 6..1845 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.5908504-CDS-F-distichus_contig96857:5..1671622931146.5908504-CDS-F-distichus_contig96857:5..167Fucus distichus monoicousCDSF-distichus_contig96857 6..167 -
1690886178.3553338-CDS-F-distichus_contig96857:5..1671690886178.3553338-CDS-F-distichus_contig96857:5..167Fucus distichus monoicousCDSF-distichus_contig96857 6..167 -
1622931146.605568-CDS-F-distichus_contig96857:739..8951622931146.605568-CDS-F-distichus_contig96857:739..895Fucus distichus monoicousCDSF-distichus_contig96857 740..895 -
1690886178.368324-CDS-F-distichus_contig96857:739..8951690886178.368324-CDS-F-distichus_contig96857:739..895Fucus distichus monoicousCDSF-distichus_contig96857 740..895 -
1622931146.6245193-CDS-F-distichus_contig96857:1478..15621622931146.6245193-CDS-F-distichus_contig96857:1478..1562Fucus distichus monoicousCDSF-distichus_contig96857 1479..1562 -
1690886178.3781102-CDS-F-distichus_contig96857:1478..15621690886178.3781102-CDS-F-distichus_contig96857:1478..1562Fucus distichus monoicousCDSF-distichus_contig96857 1479..1562 -
1622931146.6419163-CDS-F-distichus_contig96857:1743..18451622931146.6419163-CDS-F-distichus_contig96857:1743..1845Fucus distichus monoicousCDSF-distichus_contig96857 1744..1845 -
1690886178.3919985-CDS-F-distichus_contig96857:1743..18451690886178.3919985-CDS-F-distichus_contig96857:1743..1845Fucus distichus monoicousCDSF-distichus_contig96857 1744..1845 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931146.6566212-UTR-F-distichus_contig96857:1845..18481622931146.6566212-UTR-F-distichus_contig96857:1845..1848Fucus distichus monoicousUTRF-distichus_contig96857 1846..1848 -
1690886178.404682-UTR-F-distichus_contig96857:1845..18481690886178.404682-UTR-F-distichus_contig96857:1845..1848Fucus distichus monoicousUTRF-distichus_contig96857 1846..1848 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96857.19135.1

>prot_F-distichus_contig96857.19135.1 ID=prot_F-distichus_contig96857.19135.1|Name=mRNA_F-distichus_contig96857.19135.1|organism=Fucus distichus monoicous|type=polypeptide|length=168bp
MVHSTKMSGALKILERMVNQNAEDEIFQDFKYWEDASDQFREGEGSLLPL
WRFSTNRTRRKQQVTALAWNPHYPDLFAAAYGSYDFMHQGGGIVCCFSLK
NTSNPEYTFSTESGVMCLDFHPVHNSLLAVGCHEGTVMVFDVRHKANHPI
YSSTIKTGKHTDPVWQVR
back to top

mRNA from alignment at F-distichus_contig96857:6..1848-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96857.19135.1 ID=mRNA_F-distichus_contig96857.19135.1|Name=mRNA_F-distichus_contig96857.19135.1|organism=Fucus distichus monoicous|type=mRNA|length=1843bp|location=Sequence derived from alignment at F-distichus_contig96857:6..1848- (Fucus distichus monoicous)
GACATGGTGCACAGCACCAAGATGAGCGGAGCGCTCAAGATCCTCGAGCG
AATGGTGAACCAGAACGCCGAGGACGAAATATTCCAGGACTTCAAGTACT
GGGAGGTAAGTCGTGCCGGATGAACCCGCACCACCGTGCCCCGTGGGGGG
GCCCAACAAAATCCAGGCCCGCCCGGCCTCCCCGCCCGGCGAGAAAACCC
GTGCTCCTTCCGCCCCCCCCCCCCCCCTTCCCCCATCCCGGATGGTGTTC
CGATCCGATTCGATCTTGTGTCGTGTTGTGCCCCAGGACGCGTCCGACCA
ATTTCGGGAGGGCGAGGGGTCCCTGCTGCCGTTGTGGCGCTTCAGCACGA
ACAGAACAAGGAGAAAACAGGTGCGCTCGCGGCCTTTAGAATCTGGTTGC
CGCAATCGGACCCAAGAAATCGTTTTCACACAACTCCCATTTTTTTTTCT
TCTTGCTTTCGCGCGCCTTTTCCATCGCTTCGCTACTGTGTGTGTGTGTG
TTGTGTGTGTGTGTGTGTATGTGTGTGTGTGTGTGTGTGTGTGTATTTAT
TAAATTGCACATGACCGCGCAATCCGGGCCTGTCATCCTAGTCATTCTAT
GCCACTTGCATTGATCCTCCCGAGAGGGGATCAATGATACTTATTACGAA
AACCTCTGATCAGACGCGACAAAGGGGACACACTCTCTCTACTTGTACAA
TTCTTACTTGAGCGTGAGTGTGTGTGTGTGTAGTTGCGTGTTAGTCTTTT
TCTCTCTTCATATAACGGGGAAAAGGCGCGAAATTTTAAGCCCGCGGCAG
CGACGTGGGCTGCATCTCCGATCTTCTTGTCGATGCGTTTGTCTTCATTC
GGCGTTACAGTCCCATTTAAGGCCTCATTCGATGCCTCCTTTGTCTGATG
GGTCCTGCGCACGTGTTTATGGGTGGATGATCCGGCCGCCAACGACCCCC
GAGCAGGTCACGGCCTTGGCCTGGAACCCGCACTACCCCGACCTCTTCGC
CGCCGCTTACGGCAGCTACGACTTCATGCACCAGGGCGGCGGCATCGTGT
GCTGCTTCAGCCTCAAGAATACCAGCAACCCAGAGTACACGTTCAGTACC
GAGAGCGGGGTGAGATGCTTTTTTTTCTTCTTCTTCTTTTTCGTGGGGTT
TCTAGGACACGGGGAAGGCGTAATCGGGGTTTTAACATTCAAGCACGTCA
TGTGATGTTCGGATGGTTTGGGTTGGCCGCGGAATGGCTGTCACGATAAC
ACAGCGAGGGCCTATCTCGCGTGGGGGCTTGCAAGGGCGTCGAGCAAACG
ACGCCGGGAATTTTACCGCTCTCCGCCTACTCGGGCGCGGGACCGGAGTA
TAGAACTACTAACGGTGAATGTTATTATGCCTGTAGTTGTAGTTGTTCCC
GTCTTGGGCGTCTTTCCCAAGAACACTCCGCCTCCTGTCACCGTCCGCTC
GCGCTGAGACTACGGCTGAAGAAACACTCACCTTCCTCACACGCGAGCTC
AACAGACAGCGGCACGCCCTCGTCTCGGAACACGTTCTCTGCTGGATGTA
TCACCTCTCACTCTGTTGCTGCCGCATGATTCTTGCCGAGATGTACCCGG
TCGAACAAAGGGCCCCACTCGGCAGAACCAGGACGAAAGAGCGCGGAAAA
CCTTGATCCACTGTTAATGCCAAACTACCAGGTGATGTGTCTCGACTTCC
ACCCGGTCCACAACTCCCTGCTGGCGGTGGGCTGCCACGAGGGCACCGTC
ATGGTGTTCGACGTTAGGCACAAGGCAAATCATCCCATCTACTCCTCGAC
CATTAAGACGGGGAAACACACGGATCCTGTGTGGCAGGTGCGG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig96857:6..1848-

>mRNA_F-distichus_contig96857.19135.1 ID=mRNA_F-distichus_contig96857.19135.1|Name=mRNA_F-distichus_contig96857.19135.1|organism=Fucus distichus monoicous|type=CDS|length=1008bp|location=Sequence derived from alignment at F-distichus_contig96857:6..1848- (Fucus distichus monoicous)
ATGGTGCACAGCACCAAGATGAGCGGAGCGCTCAAGATCCTCGAGCGAAT
GGTGAACCAGAACGCCGAGGACGAAATATTCCAGGACTTCAAGTACTGGG
AGATGGTGCACAGCACCAAGATGAGCGGAGCGCTCAAGATCCTCGAGCGA
ATGGTGAACCAGAACGCCGAGGACGAAATATTCCAGGACTTCAAGTACTG
GGAGGACGCGTCCGACCAATTTCGGGAGGGCGAGGGGTCCCTGCTGCCGT
TGTGGCGCTTCAGCACGAACAGAACAAGGAGAAAACAGGACGCGTCCGAC
CAATTTCGGGAGGGCGAGGGGTCCCTGCTGCCGTTGTGGCGCTTCAGCAC
GAACAGAACAAGGAGAAAACAGCAGGTCACGGCCTTGGCCTGGAACCCGC
ACTACCCCGACCTCTTCGCCGCCGCTTACGGCAGCTACGACTTCATGCAC
CAGGGCGGCGGCATCGTGTGCTGCTTCAGCCTCAAGAATACCAGCAACCC
AGAGTACACGTTCAGTACCGAGAGCGGGCAGGTCACGGCCTTGGCCTGGA
ACCCGCACTACCCCGACCTCTTCGCCGCCGCTTACGGCAGCTACGACTTC
ATGCACCAGGGCGGCGGCATCGTGTGCTGCTTCAGCCTCAAGAATACCAG
CAACCCAGAGTACACGTTCAGTACCGAGAGCGGGGTGATGTGTCTCGACT
TCCACCCGGTCCACAACTCCCTGCTGGCGGTGGGCTGCCACGAGGGCACC
GTCATGGTGTTCGACGTTAGGCACAAGGCAAATCATCCCATCTACTCCTC
GACCATTAAGACGGGGAAACACACGGATCCTGTGTGGCAGGTGCGGGTGA
TGTGTCTCGACTTCCACCCGGTCCACAACTCCCTGCTGGCGGTGGGCTGC
CACGAGGGCACCGTCATGGTGTTCGACGTTAGGCACAAGGCAAATCATCC
CATCTACTCCTCGACCATTAAGACGGGGAAACACACGGATCCTGTGTGGC
AGGTGCGG
back to top