mRNA_F-distichus_contig96781.19130.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96781.19130.1
Unique NamemRNA_F-distichus_contig96781.19130.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96781.19130.1 vs. uniprot
Match: A0A7S3HFS1_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HFS1_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 2.710e-11
Identity = 40/108 (37.04%), Postives = 58/108 (53.70%), Query Frame = 1 
Query:   58 RKWATFILLGPLLPSMFAILLVVVGRAIVKGDPIEADGHNACGQPLDIFIEAAIWVSYAFLAVFAWSFLGSKVTWSF--WGRRSWLLRPFYGLVIVAVQYMFLFAVSF 375
            +KWA  +L+GP LP++FA++++V G+ ++            CG  LD FI AA+ V Y FL VF+W ++G  V  S    G    LL PF  L  +   Y  +  VSF
Sbjct:   31 KKWAGLVLIGPFLPAVFALIVIVCGQLVLN------TWTGTCGYALDSFISAAVAVCYLFLMVFSWVYVGDTVILSLPALGIELTLLTPFKSLKYIVFYYFVVAVVSF 132
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BLAST of mRNA_F-distichus_contig96781.19130.1 vs. uniprot
Match: A0A7S1UGR8_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1UGR8_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 3.550e-6
Identity = 37/111 (33.33%), Postives = 55/111 (49.55%), Query Frame = 1 
Query:   58 RKWATFILLGPLLPSMFAILLVVVGRAIVKGDPIEA------DGHNACGQPLDIFIEAAIWVSYAFLAVFAWSFLGSKVTWSFWGRRSWLLRPFYGLVIVAVQYMFLFAVS 372
            RKW+  ++ GPL  + FAI   +VG  ++    ++        G+NA    +  FI  AI VSY FL ++AW FLG K       R+  +LRP   L ++   Y  L  V+
Sbjct:   16 RKWSGVLIFGPLPWAFFAIFTTLVGSVLIHTAKLKCLDLFGDAGNNA--DNIANFIRGAIVVSYLFLMLYAWLFLGFKWDLKIMSRKYPVLRPIPNLAVLCTLYAILAVVT 124
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96781.19130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A7S3HFS1_9STRA2.710e-1137.04Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A7S1UGR8_9STRA3.550e-633.33Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96781contigF-distichus_contig96781:119..1076 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionEF-hand domain pair
Ec32 orthologEc-25_000620.1
Exons2
Model size384
Cds size384
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931145.8629293-CDS-F-distichus_contig96781:118..3551622931145.8629293-CDS-F-distichus_contig96781:118..355Fucus distichus monoicousCDSF-distichus_contig96781 119..355 -
1690886177.9745638-CDS-F-distichus_contig96781:118..3551690886177.9745638-CDS-F-distichus_contig96781:118..355Fucus distichus monoicousCDSF-distichus_contig96781 119..355 -
1622931145.8820946-CDS-F-distichus_contig96781:929..10761622931145.8820946-CDS-F-distichus_contig96781:929..1076Fucus distichus monoicousCDSF-distichus_contig96781 930..1076 -
1690886177.9885397-CDS-F-distichus_contig96781:929..10761690886177.9885397-CDS-F-distichus_contig96781:929..1076Fucus distichus monoicousCDSF-distichus_contig96781 930..1076 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96781.19130.1prot_F-distichus_contig96781.19130.1Fucus distichus monoicouspolypeptideF-distichus_contig96781 119..1076 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96781.19130.1

>prot_F-distichus_contig96781.19130.1 ID=prot_F-distichus_contig96781.19130.1|Name=mRNA_F-distichus_contig96781.19130.1|organism=Fucus distichus monoicous|type=polypeptide|length=128bp
MNDETKALAAALASCSAAQRKWATFILLGPLLPSMFAILLVVVGRAIVKG
DPIEADGHNACGQPLDIFIEAAIWVSYAFLAVFAWSFLGSKVTWSFWGRR
SWLLRPFYGLVIVAVQYMFLFAVSFGM*
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mRNA from alignment at F-distichus_contig96781:119..1076-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96781.19130.1 ID=mRNA_F-distichus_contig96781.19130.1|Name=mRNA_F-distichus_contig96781.19130.1|organism=Fucus distichus monoicous|type=mRNA|length=958bp|location=Sequence derived from alignment at F-distichus_contig96781:119..1076- (Fucus distichus monoicous)
ATGAACGATGAGACGAAAGCGCTTGCAGCTGCTCTGGCCTCGTGCTCGGC
GGCGCAAAGAAAATGGGCAACCTTTATTTTGCTAGGGCCACTGCTACCGA
GCATGTTTGCTATCCTGCTCGTCGTCGTCGGTAGGGCTATTGTAAAGGTG
ATGGGATGCTTTGTCGAGTCTCTCCAAGTAGTAGTGTAGAAACGAACCTC
CGCAGGCCTTCTTTCAAGAGTAACCAAGTCTTTTGTATTGTACCAAGTAT
TATTCATTATACATGTGTATCGTAATTTTTTGTTGTCAAGGTACAACTTT
GTAATTGAAATTAACAGACACACATATTATGCGCAATTTAGTAGTCAACG
CTTCCCGCAAGACCGAAATCGCTTTGACGGCGCACAGCATCAATCATATA
CAACTCGTTCGTTCGGGGACAAATGAGCCAGGAAATCTTGATCCGATTTG
TTACGTTCTCGCACGTGTGCATGTACATGCATGCACGGGTACTAACTTGA
ACCTGCGAAGAACACGCAGGGCCTCGGTATACGGTCAACAATATAATATC
GCGAGTATAAGCCCACCGCGTGTACACCTACTCACATTAATCGCTATGCG
GAGGCACAGCGTCTTGAACCCGGAAACAACTTAGTTTGAGGATAACGTAC
GGCGAGAAAGCATCAGCCGAAGCTCACATGCTACGTTTCATTTTGTTACA
CCCTGTTACACACGAATGCAGGGCGATCCTATCGAAGCAGACGGACACAA
CGCCTGCGGACAACCCCTAGATATATTTATCGAGGCCGCGATATGGGTTA
GCTACGCTTTCCTGGCGGTGTTTGCCTGGTCATTTTTGGGGTCCAAGGTC
ACATGGTCCTTCTGGGGTCGGCGAAGTTGGCTGTTGCGACCCTTCTATGG
CCTCGTGATCGTGGCGGTGCAGTACATGTTCTTGTTCGCCGTCAGCTTTG
GCATGTAA
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Coding sequence (CDS) from alignment at F-distichus_contig96781:119..1076-

>mRNA_F-distichus_contig96781.19130.1 ID=mRNA_F-distichus_contig96781.19130.1|Name=mRNA_F-distichus_contig96781.19130.1|organism=Fucus distichus monoicous|type=CDS|length=768bp|location=Sequence derived from alignment at F-distichus_contig96781:119..1076- (Fucus distichus monoicous)
ATGAACGATGAGACGAAAGCGCTTGCAGCTGCTCTGGCCTCGTGCTCGGC
GGCGCAAAGAAAATGGGCAACCTTTATTTTGCTAGGGCCACTGCTACCGA
GCATGTTTGCTATCCTGCTCGTCGTCGTCGGTAGGGCTATTGTAAAGATG
AACGATGAGACGAAAGCGCTTGCAGCTGCTCTGGCCTCGTGCTCGGCGGC
GCAAAGAAAATGGGCAACCTTTATTTTGCTAGGGCCACTGCTACCGAGCA
TGTTTGCTATCCTGCTCGTCGTCGTCGGTAGGGCTATTGTAAAGGGCGAT
CCTATCGAAGCAGACGGACACAACGCCTGCGGACAACCCCTAGATATATT
TATCGAGGCCGCGATATGGGTTAGCTACGCTTTCCTGGCGGTGTTTGCCT
GGTCATTTTTGGGGTCCAAGGTCACATGGTCCTTCTGGGGTCGGCGAAGT
TGGCTGTTGCGACCCTTCTATGGCCTCGTGATCGTGGCGGTGCAGTACAT
GTTCTTGTTCGCCGTCAGCTTTGGCATGTAAGGCGATCCTATCGAAGCAG
ACGGACACAACGCCTGCGGACAACCCCTAGATATATTTATCGAGGCCGCG
ATATGGGTTAGCTACGCTTTCCTGGCGGTGTTTGCCTGGTCATTTTTGGG
GTCCAAGGTCACATGGTCCTTCTGGGGTCGGCGAAGTTGGCTGTTGCGAC
CCTTCTATGGCCTCGTGATCGTGGCGGTGCAGTACATGTTCTTGTTCGCC
GTCAGCTTTGGCATGTAA
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