mRNA_F-distichus_contig96670.19123.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96670.19123.1
Unique NamemRNA_F-distichus_contig96670.19123.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96670.19123.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96670contigF-distichus_contig96670:1894..2190 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size297
Cds size297
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931144.751148-CDS-F-distichus_contig96670:1893..21901622931144.751148-CDS-F-distichus_contig96670:1893..2190Fucus distichus monoicousCDSF-distichus_contig96670 1894..2190 -
1690886177.3173163-CDS-F-distichus_contig96670:1893..21901690886177.3173163-CDS-F-distichus_contig96670:1893..2190Fucus distichus monoicousCDSF-distichus_contig96670 1894..2190 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96670.19123.1prot_F-distichus_contig96670.19123.1Fucus distichus monoicouspolypeptideF-distichus_contig96670 1894..2190 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96670.19123.1

>prot_F-distichus_contig96670.19123.1 ID=prot_F-distichus_contig96670.19123.1|Name=mRNA_F-distichus_contig96670.19123.1|organism=Fucus distichus monoicous|type=polypeptide|length=99bp
LSEVDKNVDPVRVDIEIDTGVVTLNSEYRDRLSFDFDCSGGSSTWYCWSE
PILQNKMSFIGTPSDVENSLNGTTYLSRYRYVNDNVSITIYHGSGGSCM
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mRNA from alignment at F-distichus_contig96670:1894..2190-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96670.19123.1 ID=mRNA_F-distichus_contig96670.19123.1|Name=mRNA_F-distichus_contig96670.19123.1|organism=Fucus distichus monoicous|type=mRNA|length=297bp|location=Sequence derived from alignment at F-distichus_contig96670:1894..2190- (Fucus distichus monoicous)
TTAAGCGAGGTCGACAAGAATGTCGACCCTGTGCGTGTTGATATCGAAAT
CGATACCGGGGTGGTAACTCTCAACAGCGAATACCGAGATCGACTGAGCT
TTGATTTCGACTGTAGCGGCGGATCCTCTACTTGGTATTGCTGGTCTGAG
CCCATTTTGCAGAACAAGATGAGCTTCATTGGTACTCCCAGTGACGTGGA
AAACTCTTTGAACGGAACGACGTACCTCAGCAGGTACCGCTATGTCAACG
ATAATGTCTCCATCACCATATACCACGGATCAGGCGGTAGTTGTATG
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Coding sequence (CDS) from alignment at F-distichus_contig96670:1894..2190-

>mRNA_F-distichus_contig96670.19123.1 ID=mRNA_F-distichus_contig96670.19123.1|Name=mRNA_F-distichus_contig96670.19123.1|organism=Fucus distichus monoicous|type=CDS|length=594bp|location=Sequence derived from alignment at F-distichus_contig96670:1894..2190- (Fucus distichus monoicous)
TTAAGCGAGGTCGACAAGAATGTCGACCCTGTGCGTGTTGATATCGAAAT
CGATACCGGGGTGGTAACTCTCAACAGCGAATACCGAGATCGACTGAGCT
TTGATTTCGACTGTAGCGGCGGATCCTCTACTTGGTATTGCTGGTCTGAG
CCCATTTTGCAGAACAAGATGAGCTTCATTGGTACTCCCAGTGACGTGGA
AAACTCTTTGAACGGAACGACGTACCTCAGCAGGTACCGCTATGTCAACG
ATAATGTCTCCATCACCATATACCACGGATCAGGCGGTAGTTGTATGTTA
AGCGAGGTCGACAAGAATGTCGACCCTGTGCGTGTTGATATCGAAATCGA
TACCGGGGTGGTAACTCTCAACAGCGAATACCGAGATCGACTGAGCTTTG
ATTTCGACTGTAGCGGCGGATCCTCTACTTGGTATTGCTGGTCTGAGCCC
ATTTTGCAGAACAAGATGAGCTTCATTGGTACTCCCAGTGACGTGGAAAA
CTCTTTGAACGGAACGACGTACCTCAGCAGGTACCGCTATGTCAACGATA
ATGTCTCCATCACCATATACCACGGATCAGGCGGTAGTTGTATG
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