mRNA_F-distichus_contig96661.19122.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96661.19122.1
Unique NamemRNA_F-distichus_contig96661.19122.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96661.19122.1 vs. uniprot
Match: D8LI76_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LI76_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 1.360e-50
Identity = 148/324 (45.68%), Postives = 172/324 (53.09%), Query Frame = 1 
Query:    1 RSLTPLSTTRQAAAENGLELVRKRGGQVLYGVAPETTESRYPRPNQHQPSQRVGAWSVCRAKRGTAPPSPGTAVA-PFPPRSAELEPEERVRTQEEEXXXXXXXYE---------------------------------------ERGVAGI-RLSSAVSSDGGFGESAEKDRP-----GGAAASA-EFVGWGGAGGAGWGPWSHVDMQLVVGQASKHRVLLIRFVRARTTACRDAVRVATAAAEIGEPLAIAPAAQNFVSGVRRALQERGMLMDSLEDFPTQEGRVMLDPHFLAQVEEMCQWDMVTSLREAGVSLDEHARVSE 831
            +++T L      AA +GLELVRKRGGQVLYGVAP  +                            APPSP  ++  P  PRS               XXXXXXX                                         E  V G     +A SS    G SA K        GGA   A E  GW GAGGAGWG WSHVDMQLVVGQASKHRVLL+RFV +RT   R+  R+A AAAE GEPLAIAPAA+ FVS V+RAL++RG L++SLE+ P Q+ +V +D  FL+QVE MCQ+DMV SLREAGVSLDEHAR  E
Sbjct:  496 QAVTILHVASLIAANHGLELVRKRGGQVLYGVAPPASN---------------------------APPSPHDSILFPHSPRSPAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSPENEVEGAAERGTADSSAAAGGXSASKGAATGKLWGGAVGGATELRGWWGAGGAGWGAWSHVDMQLVVGQASKHRVLLVRFVTSRTATSREVFRLAAAAAENGEPLAIAPAAKGFVSSVQRALRDRGALLESLEELPVQKTKVEIDAQFLSQVEGMCQFDMVASLREAGVSLDEHARNEE 792
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96661.19122.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LI76_ECTSI1.360e-5045.68Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96661contigF-distichus_contig96661:519..1960 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size831
Cds size831
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96661.19122.1prot_F-distichus_contig96661.19122.1Fucus distichus monoicouspolypeptideF-distichus_contig96661 519..1960 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931144.6037652-CDS-F-distichus_contig96661:518..10341622931144.6037652-CDS-F-distichus_contig96661:518..1034Fucus distichus monoicousCDSF-distichus_contig96661 519..1034 +
1690886177.2845607-CDS-F-distichus_contig96661:518..10341690886177.2845607-CDS-F-distichus_contig96661:518..1034Fucus distichus monoicousCDSF-distichus_contig96661 519..1034 +
1622931144.6190119-CDS-F-distichus_contig96661:1308..15391622931144.6190119-CDS-F-distichus_contig96661:1308..1539Fucus distichus monoicousCDSF-distichus_contig96661 1309..1539 +
1690886177.2948923-CDS-F-distichus_contig96661:1308..15391690886177.2948923-CDS-F-distichus_contig96661:1308..1539Fucus distichus monoicousCDSF-distichus_contig96661 1309..1539 +
1622931144.632624-CDS-F-distichus_contig96661:1876..19601622931144.632624-CDS-F-distichus_contig96661:1876..1960Fucus distichus monoicousCDSF-distichus_contig96661 1877..1960 +
1690886177.3056788-CDS-F-distichus_contig96661:1876..19601690886177.3056788-CDS-F-distichus_contig96661:1876..1960Fucus distichus monoicousCDSF-distichus_contig96661 1877..1960 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96661.19122.1

>prot_F-distichus_contig96661.19122.1 ID=prot_F-distichus_contig96661.19122.1|Name=mRNA_F-distichus_contig96661.19122.1|organism=Fucus distichus monoicous|type=polypeptide|length=277bp
RSLTPLSTTRQAAAENGLELVRKRGGQVLYGVAPETTESRYPRPNQHQPS
QRVGAWSVCRAKRGTAPPSPGTAVAPFPPRSAELEPEERVRTQEEEEEEY
EEEYEERGVAGIRLSSAVSSDGGFGESAEKDRPGGAAASAEFVGWGGAGG
AGWGPWSHVDMQLVVGQASKHRVLLIRFVRARTTACRDAVRVATAAAEIG
EPLAIAPAAQNFVSGVRRALQERGMLMDSLEDFPTQEGRVMLDPHFLAQV
EEMCQWDMVTSLREAGVSLDEHARVSE
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mRNA from alignment at F-distichus_contig96661:519..1960+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96661.19122.1 ID=mRNA_F-distichus_contig96661.19122.1|Name=mRNA_F-distichus_contig96661.19122.1|organism=Fucus distichus monoicous|type=mRNA|length=1442bp|location=Sequence derived from alignment at F-distichus_contig96661:519..1960+ (Fucus distichus monoicous)
CGATCGTTAACGCCACTGTCAACGACCCGCCAGGCGGCTGCGGAGAACGG
GCTGGAACTCGTCCGCAAGCGCGGGGGCCAGGTCCTGTACGGTGTCGCTC
CCGAGACGACGGAATCGCGCTATCCTCGCCCAAACCAGCATCAACCTTCC
CAGCGCGTTGGGGCGTGGTCCGTCTGCCGAGCGAAGAGGGGCACTGCTCC
CCCGTCCCCAGGAACAGCCGTGGCTCCTTTTCCGCCAAGGAGTGCCGAGC
TTGAGCCGGAAGAAAGAGTAAGGACTCAGGAGGAGGAGGAGGAAGAGTAC
GAGGAGGAGTACGAGGAAAGAGGGGTCGCCGGGATTAGACTCTCGTCTGC
GGTGAGCTCCGACGGGGGATTTGGAGAGAGTGCGGAAAAGGACAGGCCCG
GCGGGGCGGCGGCATCGGCCGAATTTGTGGGGTGGGGGGGAGCAGGCGGC
GCCGGATGGGGTCCGTGGAGTCACGTGGACATGCAGCTGGTTGTCGGGCA
GGCGTCTAAGCATCGGGTGAGCGCTGGCGACACGAGCGAGAAAGTGGGAT
TTATCGAGAAGAGTATTGGATGGGTGTCGTTGTGTGTCTGTTTTGGGCGT
CGAATTTTGCACGAGGCGTACATGCATCGACGATGAATGTCTTAGGGCTT
TATAATCCCCATGATACTATTAATATAGCTCTTCGCCACCCGACTTAACC
CTACACTATCGCCCCCCGCCCCCCCCCCAATCCTCCTCGTGTTGATGGTG
CCTTCTCATCTCTTCCCTCCCTCTCTGCCCTCTCTCGAAGGTCCTCCTCA
TTCGATTCGTGAGAGCACGGACGACGGCCTGCCGCGACGCCGTCCGCGTT
GCTACCGCGGCGGCGGAGATCGGGGAACCGCTGGCCATCGCGCCGGCTGC
GCAAAATTTCGTTTCGGGGGTCCGCAGGGCGCTGCAAGAGCGTGGCATGC
TGATGGATTCGCTCGAGGATTTCCCGACGCAAGAAGGGAGGGTCATGCTA
GACCCCCATTTCTTGGCCCAGGTTACACCTACAGTATATTTAAAGTCCTA
ATTCTATAAGAAAAAAACGCAATCAAACCTTATTTCATCCTCGCGTAAGT
ATCCCTAGGGGCACGCGCGCGACACGGTATGTCTTGGTTTGTCTCACCAC
GCCTCTGCACGTGTGGAAACCCTTACTATATACTTGGTGGTGTATTTGGG
GAGTTTTGGGTGCGGAGGGGGATTGCTTGTTTTGCGGTTGGTTTCTGTGT
GCGATCGCTTGCTTGATGGGCGGGAATAGGAGGGGTTGATTGGCCTCGTT
ACCTGTCTGCTGCCTTGCCTTTTCTGCTCGGTTTACTGGAACGTTTGCCC
TCGTGAAGGTGGAGGAAATGTGCCAGTGGGATATGGTGACGAGCCTCCGC
GAAGCGGGCGTGTCCTTGGACGAACACGCTCGGGTAAGTGAG
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Coding sequence (CDS) from alignment at F-distichus_contig96661:519..1960+

>mRNA_F-distichus_contig96661.19122.1 ID=mRNA_F-distichus_contig96661.19122.1|Name=mRNA_F-distichus_contig96661.19122.1|organism=Fucus distichus monoicous|type=CDS|length=1662bp|location=Sequence derived from alignment at F-distichus_contig96661:519..1960+ (Fucus distichus monoicous)
CGATCGTTAACGCCACTGTCAACGACCCGCCAGGCGGCTGCGGAGAACGG
GCTGGAACTCGTCCGCAAGCGCGGGGGCCAGGTCCTGTACGGTGTCGCTC
CCGAGACGACGGAATCGCGCTATCCTCGCCCAAACCAGCATCAACCTTCC
CAGCGCGTTGGGGCGTGGTCCGTCTGCCGAGCGAAGAGGGGCACTGCTCC
CCCGTCCCCAGGAACAGCCGTGGCTCCTTTTCCGCCAAGGAGTGCCGAGC
TTGAGCCGGAAGAAAGAGTAAGGACTCAGGAGGAGGAGGAGGAAGAGTAC
GAGGAGGAGTACGAGGAAAGAGGGGTCGCCGGGATTAGACTCTCGTCTGC
GGTGAGCTCCGACGGGGGATTTGGAGAGAGTGCGGAAAAGGACAGGCCCG
GCGGGGCGGCGGCATCGGCCGAATTTGTGGGGTGGGGGGGAGCAGGCGGC
GCCGGATGGGGTCCGTGGAGTCACGTGGACATGCAGCTGGTTGTCGGGCA
GGCGTCTAAGCATCGGCGATCGTTAACGCCACTGTCAACGACCCGCCAGG
CGGCTGCGGAGAACGGGCTGGAACTCGTCCGCAAGCGCGGGGGCCAGGTC
CTGTACGGTGTCGCTCCCGAGACGACGGAATCGCGCTATCCTCGCCCAAA
CCAGCATCAACCTTCCCAGCGCGTTGGGGCGTGGTCCGTCTGCCGAGCGA
AGAGGGGCACTGCTCCCCCGTCCCCAGGAACAGCCGTGGCTCCTTTTCCG
CCAAGGAGTGCCGAGCTTGAGCCGGAAGAAAGAGTAAGGACTCAGGAGGA
GGAGGAGGAAGAGTACGAGGAGGAGTACGAGGAAAGAGGGGTCGCCGGGA
TTAGACTCTCGTCTGCGGTGAGCTCCGACGGGGGATTTGGAGAGAGTGCG
GAAAAGGACAGGCCCGGCGGGGCGGCGGCATCGGCCGAATTTGTGGGGTG
GGGGGGAGCAGGCGGCGCCGGATGGGGTCCGTGGAGTCACGTGGACATGC
AGCTGGTTGTCGGGCAGGCGTCTAAGCATCGGGTCCTCCTCATTCGATTC
GTGAGAGCACGGACGACGGCCTGCCGCGACGCCGTCCGCGTTGCTACCGC
GGCGGCGGAGATCGGGGAACCGCTGGCCATCGCGCCGGCTGCGCAAAATT
TCGTTTCGGGGGTCCGCAGGGCGCTGCAAGAGCGTGGCATGCTGATGGAT
TCGCTCGAGGATTTCCCGACGCAAGAAGGGAGGGTCATGCTAGACCCCCA
TTTCTTGGCCCAGGTCCTCCTCATTCGATTCGTGAGAGCACGGACGACGG
CCTGCCGCGACGCCGTCCGCGTTGCTACCGCGGCGGCGGAGATCGGGGAA
CCGCTGGCCATCGCGCCGGCTGCGCAAAATTTCGTTTCGGGGGTCCGCAG
GGCGCTGCAAGAGCGTGGCATGCTGATGGATTCGCTCGAGGATTTCCCGA
CGCAAGAAGGGAGGGTCATGCTAGACCCCCATTTCTTGGCCCAGGTGGAG
GAAATGTGCCAGTGGGATATGGTGACGAGCCTCCGCGAAGCGGGCGTGTC
CTTGGACGAACACGCTCGGGTAAGTGAGGTGGAGGAAATGTGCCAGTGGG
ATATGGTGACGAGCCTCCGCGAAGCGGGCGTGTCCTTGGACGAACACGCT
CGGGTAAGTGAG
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