mRNA_F-distichus_contig96590.19118.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96590.19118.1
Unique NamemRNA_F-distichus_contig96590.19118.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig96590.19118.1 vs. uniprot
Match: D8LHL7_ECTSI (Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHL7_ECTSI)

HSP 1 Score: 175 bits (443), Expect = 1.540e-53
Identity = 84/113 (74.34%), Postives = 93/113 (82.30%), Query Frame = 1
Query:    1 TMGFKNPFAALKQGIARAGAGAYDEGAVQEAIDQDIKG-NKVMVFSWARCPFCKKAKGLLTDLLVNPTDYKFVELDERGDGNAIRYELSQMTGRTSVPQIWIDGEFVGGCNDG 336
            TMGFK+P   LKQGIA+ GAG YD+ AV + +D    G NKV+VFSW RCPFCKKAKGL+ DLL +P DY+FVELDER DGNAIRYELSQ TGRTSVPQIWI GEFVGGCNDG
Sbjct:   64 TMGFKSPVDVLKQGIAKIGAGPYDKDAVVKVVDGYTSGSNKVVVFSWTRCPFCKKAKGLIEDLLADPADYEFVELDERQDGNAIRYELSQKTGRTSVPQIWIGGEFVGGCNDG 176          
BLAST of mRNA_F-distichus_contig96590.19118.1 vs. uniprot
Match: A0A835YLP8_9STRA (Selenoprotein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YLP8_9STRA)

HSP 1 Score: 130 bits (326), Expect = 5.780e-36
Identity = 64/108 (59.26%), Postives = 78/108 (72.22%), Query Frame = 1
Query:   16 NPFAALKQGIARAGAGAYDEGAVQEAIDQDIKGNKVMVFSWARCPFCKKAKGLLTDLLVNPTDYKFVELDERGD-GNAIRYELSQMTGRTSVPQIWIDGEFVGGCNDG 336
            +PF   K+ IA+AG G Y+E  V   I+  I  NKVMVFSW  CPFCKKAK  L +L+  P+ YK VELD+  + G A R+ELS++TGRTSVPQIWI GEF+GGCNDG
Sbjct:   57 SPFNQFKKFIAKAGTGEYNEAEVAGKINSYIADNKVMVFSWTNCPFCKKAKAQLAELM-EPSQYKVVELDQDAELGKAYRFELSKITGRTSVPQIWIKGEFIGGCNDG 163          
BLAST of mRNA_F-distichus_contig96590.19118.1 vs. uniprot
Match: A0A8J9RIT3_9CHLO (Probable Glutaredoxin at C-terminar half n=1 Tax=Coccomyxa sp. Obi TaxID=2315456 RepID=A0A8J9RIT3_9CHLO)

HSP 1 Score: 115 bits (289), Expect = 2.510e-30
Identity = 59/107 (55.14%), Postives = 71/107 (66.36%), Query Frame = 1
Query:   16 NPFAALKQGIARAGAGAYDEGAVQEAIDQDIKGNKVMVFSWARCPFCKKAKGLLTDLLVNPTDYKFVELDERGDGNAIRYELSQMTGRTSVPQIWIDGEFVGGCNDG 336
            +P  A+K+ IA A AG YDE A+   +D  IK N V+VFSW RCPFC KAK  L  L      Y  VELD   DGNAIR EL++ T RTS+P +WI+GE +GGCNDG
Sbjct:   67 SPANAVKKAIAAAQAGQYDEAAIGGKVDAYIKDNPVVVFSWTRCPFCIKAKRELDSLNAK---YLAVELDTMADGNAIRSELAKRTNRTSMPNVWINGEGIGGCNDG 170          
BLAST of mRNA_F-distichus_contig96590.19118.1 vs. uniprot
Match: A0A383W3I8_TETOB (Glutaredoxin domain-containing protein n=1 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383W3I8_TETOB)

HSP 1 Score: 112 bits (280), Expect = 5.010e-29
Identity = 63/114 (55.26%), Postives = 77/114 (67.54%), Query Frame = 1
Query:    1 TMGFKN-PFAALKQGIARAGAGAYDEGAVQEAIDQDIKGNKVMVFSWARCPFCKKAKGLLTDLLVNPTDYKFVELDERG-DGNAIRYELSQMTGRTSVPQIWIDGEFVGGCNDG 336
            T+  KN P    K+ +A+A AG YDE AV+  I+  IK NKVMVFSW+ CPFCK AK LL+D+     D+  +ELD  G +G  IR EL+ MT RTSVP IWI G+ VGGCNDG
Sbjct:   54 TVALKNSPINEGKKALAKAQAGDYDEKAVRGKIEGLIKDNKVMVFSWSGCPFCKNAKALLSDV---GADFTALELDTLGQEGKQIRAELAAMTERTSVPNIWIAGKNVGGCNDG 164          
BLAST of mRNA_F-distichus_contig96590.19118.1 vs. uniprot
Match: A0A2P6TGA2_CHLSO (Glyoxalase domain-containing 4 n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TGA2_CHLSO)

HSP 1 Score: 106 bits (265), Expect = 6.340e-27
Identity = 51/95 (53.68%), Postives = 65/95 (68.42%), Query Frame = 1
Query:   52 AGAGAYDEGAVQEAIDQDIKGNKVMVFSWARCPFCKKAKGLLTDLLVNPTDYKFVELDERGDGNAIRYELSQMTGRTSVPQIWIDGEFVGGCNDG 336
            A AG YDE A + AI++ I  N V+VFSW+ CPFCK+AK +L         Y  +ELD+  DG A+R EL++ TGR+SVP IWI G+ VGGCNDG
Sbjct:   60 AAAGQYDEAATKAAIEKYIADNPVVVFSWSGCPFCKRAKAVLD---ATGAKYTALELDQMADGKALRAELAKKTGRSSVPNIWIAGQNVGGCNDG 151          
BLAST of mRNA_F-distichus_contig96590.19118.1 vs. uniprot
Match: A0A2V0PHJ4_9CHLO (Glutaredoxin domain-containing protein n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PHJ4_9CHLO)

HSP 1 Score: 104 bits (259), Expect = 6.770e-26
Identity = 52/109 (47.71%), Postives = 74/109 (67.89%), Query Frame = 1
Query:   13 KNPFAALKQGIARAGAGAYDEGAVQEAIDQDIKGNKVMVFSWARCPFCKKAKGLLTDLLVNPTDYKFVELDERG-DGNAIRYELSQMTGRTSVPQIWIDGEFVGGCNDG 336
            ++P    K+ +A+  AG YDE AV+  ++  + G  V++FS++ CPFC +AK LL +L  +   Y+ +EL+E G DG  +R EL+QMT RTS+P IWI G FVGGCNDG
Sbjct:   56 ESPLNKGKKALAKLQAGDYDEAAVRAKLEGILTGTPVVMFSFSTCPFCNRAKALLNELGAS---YEAIELNEMGKDGMQLRAELAQMTDRTSMPSIWIQGSFVGGCNDG 161          
BLAST of mRNA_F-distichus_contig96590.19118.1 vs. uniprot
Match: A0A0M0JS41_9EUKA (Glutaredoxin domain-containing protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JS41_9EUKA)

HSP 1 Score: 107 bits (268), Expect = 8.280e-26
Identity = 53/102 (51.96%), Postives = 66/102 (64.71%), Query Frame = 1
Query:   31 LKQGIARAGAGAYDEGAVQEAIDQDIKGNKVMVFSWARCPFCKKAKGLLTDLLVNPTDYKFVELDERGDGNAIRYELSQMTGRTSVPQIWIDGEFVGGCNDG 336
            LKQ +A   AG YD  AV   ++  I G+ VM+FS+  CPFCKKAK LLT        +  +ELDE  DG A+R +L + TGRTSVP +WI GE+VGG NDG
Sbjct:  223 LKQWLAERAAGEYDVAAVDARLEAAIAGSSVMLFSFTSCPFCKKAKALLT---AKGAAFSVLELDEDADGAALRAQLGRRTGRTSVPSVWIGGEYVGGMNDG 321          
BLAST of mRNA_F-distichus_contig96590.19118.1 vs. uniprot
Match: A0A061R5D6_9CHLO (Glutaredoxin-like protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061R5D6_9CHLO)

HSP 1 Score: 102 bits (254), Expect = 8.300e-25
Identity = 51/99 (51.52%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   43 IARAGAGAYDEGAVQEAIDQDIKGNKVMVFSWARCPFCKKAKGLLTDLLVNPTDYKFVELDERG-DGNAIRYELSQMTGRTSVPQIWIDGEFVGGCNDG 336
            +A+  AG YD+ AV+  ++  I   KV+VFS++ CPFC KAK LL D+     +Y+ VEL++ G +G AIR EL+++TGRTS+P IWI GE +GGCNDG
Sbjct:   95 LAKLQAGDYDKTAVRAKVENXISSEKVVVFSFSTCPFCVKAKELLQDV---GAEYEAVELNDMGKEGYAIRAELAELTGRTSMPNIWIAGEGIGGCNDG 190          
BLAST of mRNA_F-distichus_contig96590.19118.1 vs. uniprot
Match: A0A8J6CFT7_DIALT (Glutaredoxin domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CFT7_DIALT)

HSP 1 Score: 100 bits (250), Expect = 1.610e-24
Identity = 52/110 (47.27%), Postives = 73/110 (66.36%), Query Frame = 1
Query:   13 KNPFAALKQGIARAGAGAYDEGAVQEAIDQDIKGNKVMVFSWARCPFCKKAKGLLTDLLVNPTDYKFVELDERG--DGNAIRYELSQMTGRTSVPQIWIDGEFVGGCNDG 336
            ++P +  K G+A+  AG+YDEGA +  +D+ I  N V +FS+  CPFC KA+ LL ++      YK V+LD+     G A+R  L++ TGRTSVP I+I G+FVGGCNDG
Sbjct:   53 ESPVSKFKVGLAKLQAGSYDEGATRARVDELIASNAVTMFSFTTCPFCIKAQQLLDEMGAT---YKVVQLDQNAFTGGYAMRAVLAERTGRTSVPAIFIGGQFVGGCNDG 159          
BLAST of mRNA_F-distichus_contig96590.19118.1 vs. uniprot
Match: A0A2P6V558_9CHLO (NADP-dependent glyceraldehyde-3-phosphate dehydrogenase n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6V558_9CHLO)

HSP 1 Score: 106 bits (264), Expect = 2.050e-24
Identity = 58/113 (51.33%), Postives = 70/113 (61.95%), Query Frame = 1
Query:    1 TMGFKN-PFAALKQGIARAGAGAYDEGAVQEAIDQDIKGNKVMVFSWARCPFCKKAKGLLTDLLVNPTDYKFVELDERGDGNAIRYELSQMTGRTSVPQIWIDGEFVGGCNDG 336
            T+  KN P    K  +A + AG YD  A +  IDQ I  N  +VFSW+ CPFCK AK +L         Y  +ELD+R DG AIR EL++MTGR+SVP IWI  E VGGCNDG
Sbjct:   16 TVAIKNSPLNQGKVALAVSQAGDYDAAATKAMIDQAIADNGCVVFSWSGCPFCKNAKAVLD---ATGAKYVALELDQRPDGKAIRAELAKMTGRSSVPNIWIGKENVGGCNDG 125          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96590.19118.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LHL7_ECTSI1.540e-5374.34Glutaredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
A0A835YLP8_9STRA5.780e-3659.26Selenoprotein n=1 Tax=Tribonema minus TaxID=303371... [more]
A0A8J9RIT3_9CHLO2.510e-3055.14Probable Glutaredoxin at C-terminar half n=1 Tax=C... [more]
A0A383W3I8_TETOB5.010e-2955.26Glutaredoxin domain-containing protein n=1 Tax=Tet... [more]
A0A2P6TGA2_CHLSO6.340e-2753.68Glyoxalase domain-containing 4 n=1 Tax=Chlorella s... [more]
A0A2V0PHJ4_9CHLO6.770e-2647.71Glutaredoxin domain-containing protein n=1 Tax=Rap... [more]
A0A0M0JS41_9EUKA8.280e-2651.96Glutaredoxin domain-containing protein n=1 Tax=Chr... [more]
A0A061R5D6_9CHLO8.300e-2551.52Glutaredoxin-like protein n=1 Tax=Tetraselmis sp. ... [more]
A0A8J6CFT7_DIALT1.610e-2447.27Glutaredoxin domain-containing protein n=1 Tax=Dia... [more]
A0A2P6V558_9CHLO2.050e-2451.33NADP-dependent glyceraldehyde-3-phosphate dehydrog... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96590contigF-distichus_contig96590:819..2143 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.5
Seed ortholog evalue5.1e-19
Seed eggNOG ortholog55529.EKX38663
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein disulfide oxidoreductase activity
EggNOG OGsCOG0695@1,KOG1752@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size336
Cds size333
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96590.19118.1prot_F-distichus_contig96590.19118.1Fucus distichus monoicouspolypeptideF-distichus_contig96590 819..2140 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931144.0294354-CDS-F-distichus_contig96590:818..9441622931144.0294354-CDS-F-distichus_contig96590:818..944Fucus distichus monoicousCDSF-distichus_contig96590 819..944 -
1690886177.0241723-CDS-F-distichus_contig96590:818..9441690886177.0241723-CDS-F-distichus_contig96590:818..944Fucus distichus monoicousCDSF-distichus_contig96590 819..944 -
1622931144.053775-CDS-F-distichus_contig96590:1338..14051622931144.053775-CDS-F-distichus_contig96590:1338..1405Fucus distichus monoicousCDSF-distichus_contig96590 1339..1405 -
1690886177.0405047-CDS-F-distichus_contig96590:1338..14051690886177.0405047-CDS-F-distichus_contig96590:1338..1405Fucus distichus monoicousCDSF-distichus_contig96590 1339..1405 -
1622931144.0752065-CDS-F-distichus_contig96590:2000..21401622931144.0752065-CDS-F-distichus_contig96590:2000..2140Fucus distichus monoicousCDSF-distichus_contig96590 2001..2140 -
1690886177.054551-CDS-F-distichus_contig96590:2000..21401690886177.054551-CDS-F-distichus_contig96590:2000..2140Fucus distichus monoicousCDSF-distichus_contig96590 2001..2140 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931144.092543-UTR-F-distichus_contig96590:2140..21431622931144.092543-UTR-F-distichus_contig96590:2140..2143Fucus distichus monoicousUTRF-distichus_contig96590 2141..2143 -
1690886177.0728087-UTR-F-distichus_contig96590:2140..21431690886177.0728087-UTR-F-distichus_contig96590:2140..2143Fucus distichus monoicousUTRF-distichus_contig96590 2141..2143 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96590.19118.1

>prot_F-distichus_contig96590.19118.1 ID=prot_F-distichus_contig96590.19118.1|Name=mRNA_F-distichus_contig96590.19118.1|organism=Fucus distichus monoicous|type=polypeptide|length=111bp
MGFKNPFAALKQGIARAGAGAYDEGAVQEAIDQDIKGNKVMVFSWARCPF
CKKAKGLLTDLLVNPTDYKFVELDERGDGNAIRYELSQMTGRTSVPQIWI
DGEFVGGCNDG
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mRNA from alignment at F-distichus_contig96590:819..2143-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96590.19118.1 ID=mRNA_F-distichus_contig96590.19118.1|Name=mRNA_F-distichus_contig96590.19118.1|organism=Fucus distichus monoicous|type=mRNA|length=1325bp|location=Sequence derived from alignment at F-distichus_contig96590:819..2143- (Fucus distichus monoicous)
ACCATGGGGTTCAAGAACCCCTTTGCTGCGCTCAAGCAGGGCATCGCCAG GGCAGGCGCGGGAGCTTACGACGAGGGAGCCGTCCAGGAGGCAATCGACC AGGACATCAAGGGGAACAAAGTCATGGTTTTTTCGTGGGCAAGGTACATT ATATTAATAGTAATATCATTATTAATACACTACAGTACTTTGTAGGTCGT GTTGCAAGGCTCCTGCAGGAAGCGGCGCAGCGCGTTGGGGGCCCCAGCGC CTGGTATGCCCGGACCTCGATATTATATATATATATATATATTTTTGTTC CGTTTAATATAGAGATGAATACGAAGACTAGACTATTAATATTGGTAATA GGTTTTGGAACGAATACGTACAATATGTACATCTGTGTACATGTGGAGGA AAAATGTGGAAGTGCGCGGCGGGTAAGCTCTCCGGATCTCAGCTCTCATT ATTTTGCTCCCGCTGGGAGAAGTAGAGTAACGCGTGCGATTAGCCGCACC GCTTTTGGTGGTGGGGGCTCCCATGAAAACATGGGGCGGCGCGCGTAGGG AGCTGGCGGTACACCAGTAGCTCGGCCAAACCGCTGGTTTTTGGCTGGTT CTTGTGATACGCTAGAGGGGAGGGATGTTTGAGTGGCGTCTCGACACATA GTGTCTCGGAGCGGCCTCTAATTTTGGCCCCCTTCGTTGTCGACGCTCTT GACAACTTGGTCTCGAAAATATTTTTCCCTGTGACGAGGTGCCCGTTCTG CAAGAAAGCCAAGGGTTTGCTGACGGACCTCCTGGTTAATCCGACCGACT ATAAGGTGACGCCTGAAGCTTTGGGCAGATCGAAAAGCCCCCTCCCCCAA AGCCTCTCGCAGTGGCGTATCGAATGCCATGCCGTATCGCGCGGTTACTC GTAGACCTAGATGAGAGCCCCGCGAGCAGGGCCTGGCGTCAAGAAGAAGG AGAAAGATGTAGCACGGCGTGTCGAATCCCCCGGGTGGCAGCTCGAGACC CCCCCTCCTCCTGCCTCTCTTTACGTGGTAATTTGCGCCTTGTACGCGGG ATCAGTTTATAGCACGGAACTAATATGCCCGCTATGGGTTCGCCATGCCC TGGACCGCGCGGCCTCGCGTTCTGTCATCGGCGCGTCCGACGCTTGTTTT GCATTCCTTTGTCGCCCCCACTGCGTTGTTTCCTCGTTGAAACGAGCAGT TTGTGGAGCTGGATGAGAGGGGAGACGGAAACGCGATCCGGTACGAGCTG AGCCAAATGACTGGCCGGACGAGCGTTCCCCAGATCTGGATCGACGGGGA GTTCGTCGGCGGCTGCAACGACGGT
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Coding sequence (CDS) from alignment at F-distichus_contig96590:819..2143-

>mRNA_F-distichus_contig96590.19118.1 ID=mRNA_F-distichus_contig96590.19118.1|Name=mRNA_F-distichus_contig96590.19118.1|organism=Fucus distichus monoicous|type=CDS|length=666bp|location=Sequence derived from alignment at F-distichus_contig96590:819..2143- (Fucus distichus monoicous)
ATGGGGTTCAAGAACCCCTTTGCTGCGCTCAAGCAGGGCATCGCCAGGGC
AGGCGCGGGAGCTTACGACGAGGGAGCCGTCCAGGAGGCAATCGACCAGG
ACATCAAGGGGAACAAAGTCATGGTTTTTTCGTGGGCAAGATGGGGTTCA
AGAACCCCTTTGCTGCGCTCAAGCAGGGCATCGCCAGGGCAGGCGCGGGA
GCTTACGACGAGGGAGCCGTCCAGGAGGCAATCGACCAGGACATCAAGGG
GAACAAAGTCATGGTTTTTTCGTGGGCAAGGTGCCCGTTCTGCAAGAAAG
CCAAGGGTTTGCTGACGGACCTCCTGGTTAATCCGACCGACTATAAGGTG
CCCGTTCTGCAAGAAAGCCAAGGGTTTGCTGACGGACCTCCTGGTTAATC
CGACCGACTATAAGTTTGTGGAGCTGGATGAGAGGGGAGACGGAAACGCG
ATCCGGTACGAGCTGAGCCAAATGACTGGCCGGACGAGCGTTCCCCAGAT
CTGGATCGACGGGGAGTTCGTCGGCGGCTGCAACGACGGTTTTGTGGAGC
TGGATGAGAGGGGAGACGGAAACGCGATCCGGTACGAGCTGAGCCAAATG
ACTGGCCGGACGAGCGTTCCCCAGATCTGGATCGACGGGGAGTTCGTCGG
CGGCTGCAACGACGGT
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