mRNA_F-distichus_contig96586.19115.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96586.19115.1
Unique NamemRNA_F-distichus_contig96586.19115.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96586.19115.1 vs. uniprot
Match: D7G9B9_ECTSI (Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9B9_ECTSI)

HSP 1 Score: 79.7 bits (195), Expect = 4.400e-16
Identity = 41/55 (74.55%), Postives = 44/55 (80.00%), Query Frame = 1 
Query:    1 GGPLETVVHEVTGFLCPPTEEAFGAAIVRLARDPSEEEAMGREGWKRVREKFSME 165
            GGPLETVVHE TGFLC  T EAFG+AIVRLARDPS   AMG  G +RV+E FSME
Sbjct:  409 GGPLETVVHERTGFLCDATAEAFGSAIVRLARDPSLGGAMGERGRRRVQENFSME 463
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BLAST of mRNA_F-distichus_contig96586.19115.1 vs. uniprot
Match: A0A3P8XUC1_ESOLU (Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Esox lucius TaxID=8010 RepID=A0A3P8XUC1_ESOLU)

HSP 1 Score: 66.6 bits (161), Expect = 1.790e-11
Identity = 33/55 (60.00%), Postives = 40/55 (72.73%), Query Frame = 1 
Query:    1 GGPLETVVHEVTGFLCPPTEEAFGAAIVRLARDPSEEEAMGREGWKRVREKFSME 165
            GGPLE+VVH  TGFLC PT EAF  A+ +L RDP     MG+ G +RV+EKFS+E
Sbjct:  362 GGPLESVVHGETGFLCEPTAEAFSLAMEKLFRDPQLGRDMGQAGKRRVQEKFSLE 416
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BLAST of mRNA_F-distichus_contig96586.19115.1 vs. uniprot
Match: H2LXS9_ORYLA (Alpha-1,3/1,6-mannosyltransferase ALG2 n=8 Tax=Oryzias TaxID=8089 RepID=H2LXS9_ORYLA)

HSP 1 Score: 66.2 bits (160), Expect = 2.410e-11
Identity = 32/55 (58.18%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 GGPLETVVHEVTGFLCPPTEEAFGAAIVRLARDPSEEEAMGREGWKRVREKFSME 165
            GGPLE+V H  TGFLC PT EAF  A+ RL RDP     MG+ G +RV++KFS+E
Sbjct:  336 GGPLESVAHGETGFLCEPTAEAFSQAMERLIRDPHLRRDMGQAGRRRVKDKFSLE 390
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BLAST of mRNA_F-distichus_contig96586.19115.1 vs. uniprot
Match: A0A1S2ZW95_ERIEU (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Erinaceus europaeus TaxID=9365 RepID=A0A1S2ZW95_ERIEU)

HSP 1 Score: 65.5 bits (158), Expect = 4.550e-11
Identity = 33/55 (60.00%), Postives = 37/55 (67.27%), Query Frame = 1 
Query:    1 GGPLETVVHEVTGFLCPPTEEAFGAAIVRLARDPSEEEAMGREGWKRVREKFSME 165
            GGPLE+VVH VTGFLC P    F  AI +  RDPS +  MGR G  RV+EKFS E
Sbjct:  349 GGPLESVVHSVTGFLCEPDPTHFSEAIEKFIRDPSLKATMGRAGRARVKEKFSSE 403
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BLAST of mRNA_F-distichus_contig96586.19115.1 vs. uniprot
Match: A0A0D2X4T2_CAPO3 (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Capsaspora owczarzaki (strain ATCC 30864) TaxID=595528 RepID=A0A0D2X4T2_CAPO3)

HSP 1 Score: 64.7 bits (156), Expect = 8.590e-11
Identity = 32/53 (60.38%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    1 GGPLETVVHEVTGFLCPPTEEAFGAAIVRLARDPSEEEAMGREGWKRVREKFS 159
            GGPLETVVH+ TGFLC PT EAF AA++ + R+P   E MG  G  RV +KFS
Sbjct:  345 GGPLETVVHKRTGFLCNPTSEAFTAAMLEIVRNPDAAEQMGVAGRARVLDKFS 397
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BLAST of mRNA_F-distichus_contig96586.19115.1 vs. uniprot
Match: K9KDN7_HORSE (Alpha-1,3-mannosyltransferase ALG2-like protein (Fragment) n=1 Tax=Equus caballus TaxID=9796 RepID=K9KDN7_HORSE)

HSP 1 Score: 62.8 bits (151), Expect = 1.030e-10
Identity = 32/55 (58.18%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 GGPLETVVHEVTGFLCPPTEEAFGAAIVRLARDPSEEEAMGREGWKRVREKFSME 165
            GGPLE+VVH VTGFLC P    F  AI R  R+PS +  MG  G  RV+EKFS E
Sbjct:  116 GGPLESVVHSVTGFLCEPDPVCFSEAIERFIREPSLKATMGLAGRARVKEKFSSE 170
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BLAST of mRNA_F-distichus_contig96586.19115.1 vs. uniprot
Match: UPI001AAD7789 (alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Ranoidea TaxID=30352 RepID=UPI001AAD7789)

HSP 1 Score: 63.5 bits (153), Expect = 2.170e-10
Identity = 31/55 (56.36%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 GGPLETVVHEVTGFLCPPTEEAFGAAIVRLARDPSEEEAMGREGWKRVREKFSME 165
            GGPLE+VV+ VTGFLCPP  EAF  A+ +  R+PS +  MG+ G  RV E FS E
Sbjct:  335 GGPLESVVNNVTGFLCPPLAEAFADAMEKFVRNPSLKATMGKSGHARVLENFSSE 389
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BLAST of mRNA_F-distichus_contig96586.19115.1 vs. uniprot
Match: A0A6P7KW83_BETSP (Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Betta splendens TaxID=158456 RepID=A0A6P7KW83_BETSP)

HSP 1 Score: 63.5 bits (153), Expect = 2.180e-10
Identity = 30/55 (54.55%), Postives = 39/55 (70.91%), Query Frame = 1 
Query:    1 GGPLETVVHEVTGFLCPPTEEAFGAAIVRLARDPSEEEAMGREGWKRVREKFSME 165
            GGPLE+V H  TGFLC PT EAF  A+ RL R+P     MG+ G +RV++KFS++
Sbjct:  342 GGPLESVAHGETGFLCEPTAEAFSEAMERLVREPQLHRDMGQAGRRRVQDKFSVQ 396
[Close]
BLAST of mRNA_F-distichus_contig96586.19115.1 vs. uniprot
Match: A0A091GBS2_9AVES (Alpha-1,3/1,6-mannosyltransferase ALG2 (Fragment) n=4 Tax=Neognathae TaxID=8825 RepID=A0A091GBS2_9AVES)

HSP 1 Score: 62.4 bits (150), Expect = 5.090e-10
Identity = 29/55 (52.73%), Postives = 38/55 (69.09%), Query Frame = 1 
Query:    1 GGPLETVVHEVTGFLCPPTEEAFGAAIVRLARDPSEEEAMGREGWKRVREKFSME 165
            GGPLE++VH VTGFLC P    F  A++++ RDP  +++MG  G  RV EKFS E
Sbjct:  268 GGPLESIVHNVTGFLCDPVPTQFSEAMLKIVRDPLLKDSMGAAGRVRVMEKFSSE 322
[Close]
BLAST of mRNA_F-distichus_contig96586.19115.1 vs. uniprot
Match: A0A6P3I384_BISBI (Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Bison bison bison TaxID=43346 RepID=A0A6P3I384_BISBI)

HSP 1 Score: 61.6 bits (148), Expect = 6.980e-10
Identity = 31/55 (56.36%), Postives = 36/55 (65.45%), Query Frame = 1 
Query:    1 GGPLETVVHEVTGFLCPPTEEAFGAAIVRLARDPSEEEAMGREGWKRVREKFSME 165
            GGPLE+VVH VTGFLC P  E F  AI +   +PS +  MG  G  RV+EKFS E
Sbjct:  179 GGPLESVVHSVTGFLCDPDPEHFSEAIEKFIHEPSLKATMGLAGRNRVKEKFSPE 233
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96586.19115.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G9B9_ECTSI4.400e-1674.55Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Ect... [more]
A0A3P8XUC1_ESOLU1.790e-1160.00Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Eso... [more]
H2LXS9_ORYLA2.410e-1158.18Alpha-1,3/1,6-mannosyltransferase ALG2 n=8 Tax=Ory... [more]
A0A1S2ZW95_ERIEU4.550e-1160.00Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Eri... [more]
A0A0D2X4T2_CAPO38.590e-1160.38Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Cap... [more]
K9KDN7_HORSE1.030e-1058.18Alpha-1,3-mannosyltransferase ALG2-like protein (F... [more]
UPI001AAD77892.170e-1056.36alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Ran... [more]
A0A6P7KW83_BETSP2.180e-1054.55Alpha-1,3/1,6-mannosyltransferase ALG2 n=2 Tax=Bet... [more]
A0A091GBS2_9AVES5.090e-1052.73Alpha-1,3/1,6-mannosyltransferase ALG2 (Fragment) ... [more]
A0A6P3I384_BISBI6.980e-1056.36Alpha-1,3/1,6-mannosyltransferase ALG2 n=1 Tax=Bis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96586contigF-distichus_contig96586:8..172 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score79.3
Seed ortholog evalue6.1e-13
Seed eggNOG ortholog2880.D7G9B9
Preferred nameALG2
KEGG rclassRC00005,RC00028,RC02748
KEGG koko:K00695,ko:K03843,ko:K12188,ko:K20296
KEGG ReactionR00806,R05973,R06238
KEGG Pathwayko00500,ko00510,ko00513,ko01100,ko04144,map00500,map00510,map00513,map01100,map04144
KEGG ModuleM00055,M00410
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000009,GO:0000030,GO:0000033,GO:0003674,GO:0003824,GO:0004376,GO:0004378,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005789,GO:0005829,GO:0005856,GO:0006464,GO:0006486,GO:0006487,GO:0006488,GO:0006490,GO:0006629,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010035,GO:0010038,GO:0012505,GO:0015629,GO:0016020,GO:0016021,GO:0016740,GO:0016757,GO:0016758,GO:0019538,GO:0030176,GO:0031224,GO:0031227,GO:0031984,GO:0033164,GO:0033577,GO:0034645,GO:0036211,GO:0042175,GO:0042221,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043413,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044464,GO:0046982,GO:0046983,GO:0047485,GO:0048306,GO:0048471,GO:0050896,GO:0051592,GO:0070085,GO:0071704,GO:0097502,GO:0098827,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576
EggNOG free text desc.sucrose synthase activity
EggNOG OGsCOG0438@1,KOG0853@2759
EC2.4.1.13,2.4.1.132,2.4.1.257
COG Functional cat.M
CAZyGT4
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01003,ko04131,ko04147
Exons1
Model size165
Cds size165
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.8351953-CDS-F-distichus_contig96586:7..1721622931143.8351953-CDS-F-distichus_contig96586:7..172Fucus distichus monoicousCDSF-distichus_contig96586 8..172 -
1690886176.9499612-CDS-F-distichus_contig96586:7..1721690886176.9499612-CDS-F-distichus_contig96586:7..172Fucus distichus monoicousCDSF-distichus_contig96586 8..172 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96586.19115.1prot_F-distichus_contig96586.19115.1Fucus distichus monoicouspolypeptideF-distichus_contig96586 8..172 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96586.19115.1

>prot_F-distichus_contig96586.19115.1 ID=prot_F-distichus_contig96586.19115.1|Name=mRNA_F-distichus_contig96586.19115.1|organism=Fucus distichus monoicous|type=polypeptide|length=55bp
GGPLETVVHEVTGFLCPPTEEAFGAAIVRLARDPSEEEAMGREGWKRVRE
KFSME
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mRNA from alignment at F-distichus_contig96586:8..172-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96586.19115.1 ID=mRNA_F-distichus_contig96586.19115.1|Name=mRNA_F-distichus_contig96586.19115.1|organism=Fucus distichus monoicous|type=mRNA|length=165bp|location=Sequence derived from alignment at F-distichus_contig96586:8..172- (Fucus distichus monoicous)
GGCGGGCCGCTCGAAACCGTGGTCCACGAGGTAACGGGGTTTCTATGCCC
TCCTACGGAGGAGGCGTTTGGAGCGGCGATCGTGAGGCTGGCGCGAGATC
CTTCTGAGGAAGAGGCGATGGGCAGAGAGGGATGGAAGCGTGTCCGAGAA
AAATTCTCCATGGAG
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Coding sequence (CDS) from alignment at F-distichus_contig96586:8..172-

>mRNA_F-distichus_contig96586.19115.1 ID=mRNA_F-distichus_contig96586.19115.1|Name=mRNA_F-distichus_contig96586.19115.1|organism=Fucus distichus monoicous|type=CDS|length=330bp|location=Sequence derived from alignment at F-distichus_contig96586:8..172- (Fucus distichus monoicous)
GGCGGGCCGCTCGAAACCGTGGTCCACGAGGTAACGGGGTTTCTATGCCC
TCCTACGGAGGAGGCGTTTGGAGCGGCGATCGTGAGGCTGGCGCGAGATC
CTTCTGAGGAAGAGGCGATGGGCAGAGAGGGATGGAAGCGTGTCCGAGAA
AAATTCTCCATGGAGGGCGGGCCGCTCGAAACCGTGGTCCACGAGGTAAC
GGGGTTTCTATGCCCTCCTACGGAGGAGGCGTTTGGAGCGGCGATCGTGA
GGCTGGCGCGAGATCCTTCTGAGGAAGAGGCGATGGGCAGAGAGGGATGG
AAGCGTGTCCGAGAAAAATTCTCCATGGAG
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