mRNA_F-distichus_contig96521.19112.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96521.19112.1
Unique NamemRNA_F-distichus_contig96521.19112.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: F2U8R8_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U8R8_SALR5)

HSP 1 Score: 71.2 bits (173), Expect = 8.190e-14
Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRESCD-------QEGRLQKAMYGLAHTGLLW 288
            ++K R+VA+GF Q  GI  D++ + TP+  +I+ VL+++  +  +L  LD   AYL+A++++ELY+ELP  + +  D       +  RL K +YGL   G  W
Sbjct:   19 RFKARWVAKGFSQRPGIDFDQTYAPTPAAKTILTVLAVSLQRRHQLHQLDFKSAYLQADLKEELYMELPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAW 121          
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: UPI001D017C4A (uncharacterized protein LOC123068095 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D017C4A)

HSP 1 Score: 74.3 bits (181), Expect = 1.970e-13
Identity = 33/98 (33.67%), Postives = 61/98 (62.24%), Query Frame = 1
Query:    1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRESCDQEG--RLQKAMYGLAHTGLLW 288
            KYK R VA+G+ Q +G+  +E  +      ++ ++L++ A +DW++  +DV  A+L  N++KE+Y++ P  Y + C++E   +L+KA+YGL      W
Sbjct:  525 KYKARLVAKGYVQRQGVDYEEVFAPVARIETVRVLLALAAQEDWKVHRMDVKPAFLNGNLKKEVYVKQPLGYEKKCEEEKVYKLRKALYGLKQAPRAW 622          
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: A0A060SUE6_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUE6_PYCCI)

HSP 1 Score: 74.3 bits (181), Expect = 2.010e-13
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRE-SCDQEGRLQKAMYGLAHTGLLW 288
            +YK R VA+GF Q  G   +E+ + TP  ASI  +L++ A +D EL  +D+  AYL   +++E+Y++ P+ + E S D   RL K++YGL   G  W
Sbjct:  798 RYKGRLVAKGFSQRPGFDYNETFAPTPKWASIRAILALAALEDLELESVDISSAYLNGELKEEVYMKQPEGFEEKSPDWVWRLLKSLYGLKQAGRCW 894          
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: A0A060SIJ8_PYCCI (Integrase catalytic domain-containing protein n=2 Tax=Trametes TaxID=5324 RepID=A0A060SIJ8_PYCCI)

HSP 1 Score: 74.3 bits (181), Expect = 2.020e-13
Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1
Query:    1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRE-SCDQEGRLQKAMYGLAHTGLLW 288
            +YK R VA+GF Q  G   +E+ + TP  ASI  +L++ A +D EL  +D+  AYL   +++E+Y++ P+ + E S D   RL K++YGL   G  W
Sbjct:  973 RYKGRLVAKGFSQRPGFDYNETFAPTPKWASIRAILALAALEDLELESVDISSAYLNGELKEEVYMKQPEGFEEKSPDWVWRLLKSLYGLKQAGRCW 1069          
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: J7S0T6_KAZNA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Kazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / KCTC 17520 / NBRC 10181 / NCYC 3082 / Yp74L-3) TaxID=1071383 RepID=J7S0T6_KAZNA)

HSP 1 Score: 73.6 bits (179), Expect = 3.720e-13
Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1
Query:    4 YKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRESCDQEGRLQKAMYGLAHTGLLW 288
            YK R V QGFRQ +G+  DE+ +      S+ + L+I A +  ++  +DVV A+L + + KEL+++ P  Y+ + D   +L+ A+YGL  + LLW
Sbjct:  565 YKARVVVQGFRQTEGLDYDETFAPVIRYESVRLFLAIFACQGVKVHQMDVVTAFLNSPIDKELFVKPPVSYKSTGDSVWKLRSALYGLKQSPLLW 659          
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: F2U4Z2_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U4Z2_SALR5)

HSP 1 Score: 72.0 bits (175), Expect = 7.990e-13
Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 1
Query:    1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRESCD-------QEGRLQKAMYGLAHTGLLW 288
            ++K R+VA+GF Q  GI  D++ + TP+  +I+ VL+++  +  +L  LD   AYL+A++++ELY+ELP  + +  D       +  RL K +YGL   G  W
Sbjct:   40 RFKARWVAKGFSQRPGIDFDQTYAPTPAAKTILTVLAVSLQRQHQLHQLDFKSAYLQADLKEELYMELPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAW 142          
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: A0A060T044_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=3 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060T044_PYCCI)

HSP 1 Score: 72.4 bits (176), Expect = 9.250e-13
Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRE-SCDQEGRLQKAMYGLAHTGLLW 288
            +YK R VA+GF Q  G   +E+ + TP  ASI  +L++ A +D EL  +D+  AYL   +++E+Y++ P+ + E S D    L K++YGL   G  W
Sbjct:  205 RYKGRLVAKGFSQRPGFDYNETFAPTPKWASIRAILALAALEDLELESVDISSAYLNGELKEEVYMKQPEGFEEKSPDWVWHLLKSLYGLKQAGRCW 301          
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: A0A328L1K5_9BACI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Bacillus sp. SRB_331 TaxID=1969379 RepID=A0A328L1K5_9BACI)

HSP 1 Score: 71.6 bits (174), Expect = 9.640e-13
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDY-RESCDQEGRLQKAMYGLAHTGLLW 288
            K+K R V +G+ Q  GI  DE+ S     AS+ +V ++ A+   +LR LDVV A+L+A + +E+Y+  PK Y         RL+K++YGL   GL+W
Sbjct:  175 KFKARLVVKGYSQRPGIDFDETFSPVAHLASVRLVFALAASLKLKLRQLDVVGAFLQAELHEEIYMVQPKGYISHDPSLVCRLKKSLYGLKQAGLVW 271          
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: A0A328KU84_9BACI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Bacillus sp. SRB_8 TaxID=1969377 RepID=A0A328KU84_9BACI)

HSP 1 Score: 71.6 bits (174), Expect = 1.050e-12
Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query:    1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDY-RESCDQEGRLQKAMYGLAHTGLLW 288
            K+K R V +G+ Q  GI  DE+ S     AS+ +V ++ A+   +LR LDVV A+L+A + +E+Y+  PK Y         RL+K++YGL   GL+W
Sbjct:   87 KFKARLVVKGYSQRPGIDFDETFSPVAHLASVRLVFALAASLKLKLRQLDVVGAFLQAELHEEIYMVQPKGYISHDPSLVCRLKKSLYGLKQAGLVW 183          
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: A0A1Y1K7V8_PHOPY (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1K7V8_PHOPY)

HSP 1 Score: 71.2 bits (173), Expect = 1.090e-12
Identity = 33/94 (35.11%), Postives = 60/94 (63.83%), Query Frame = 1
Query:    7 KCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRESCDQEGRLQKAMYGLAHTGLLW 288
            K R V +GF+Q +GI   E+ S   +  S+ ++L+ITAAK++++R  DV  A+L   ++ E ++++P+ Y +      +LQ+++YGL  + LLW
Sbjct:  138 KARLVVRGFQQERGIDFQETYSPVVNMTSLRILLTITAAKEFKIRIFDVKTAFLHGELKDETFMQIPEGYPKKEGMICKLQRSLYGLKQSPLLW 231          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F2U8R8_SALR58.190e-1435.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
UPI001D017C4A1.970e-1333.67uncharacterized protein LOC123068095 n=1 Tax=Triti... [more]
A0A060SUE6_PYCCI2.010e-1339.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060SIJ8_PYCCI2.020e-1339.18Integrase catalytic domain-containing protein n=2 ... [more]
J7S0T6_KAZNA3.720e-1336.84Reverse transcriptase Ty1/copia-type domain-contai... [more]
F2U4Z2_SALR57.990e-1335.92Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A060T044_PYCCI9.250e-1338.14Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A328L1K5_9BACI9.640e-1339.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A328KU84_9BACI1.050e-1239.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1Y1K7V8_PHOPY1.090e-1235.11Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96521contigF-distichus_contig96521:1893..2183 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size291
Cds size195
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.4999833-CDS-F-distichus_contig96521:1892..20871622931143.4999833-CDS-F-distichus_contig96521:1892..2087Fucus distichus monoicousCDSF-distichus_contig96521 1893..2087 -
1690886176.8143508-CDS-F-distichus_contig96521:1892..20871690886176.8143508-CDS-F-distichus_contig96521:1892..2087Fucus distichus monoicousCDSF-distichus_contig96521 1893..2087 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931143.5193882-UTR-F-distichus_contig96521:2087..21831622931143.5193882-UTR-F-distichus_contig96521:2087..2183Fucus distichus monoicousUTRF-distichus_contig96521 2088..2183 -
1690886176.8287127-UTR-F-distichus_contig96521:2087..21831690886176.8287127-UTR-F-distichus_contig96521:2087..2183Fucus distichus monoicousUTRF-distichus_contig96521 2088..2183 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96521.19112.1prot_F-distichus_contig96521.19112.1Fucus distichus monoicouspolypeptideF-distichus_contig96521 1893..2087 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96521.19112.1

>prot_F-distichus_contig96521.19112.1 ID=prot_F-distichus_contig96521.19112.1|Name=mRNA_F-distichus_contig96521.19112.1|organism=Fucus distichus monoicous|type=polypeptide|length=65bp
MMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRESCDQEGRL
QKAMYGLAHTGLLW*
back to top

mRNA from alignment at F-distichus_contig96521:1893..2183-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96521.19112.1 ID=mRNA_F-distichus_contig96521.19112.1|Name=mRNA_F-distichus_contig96521.19112.1|organism=Fucus distichus monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at F-distichus_contig96521:1893..2183- (Fucus distichus monoicous)
AAGTACAAGTGCAGGTTCGTGGCTCAGGGGTTCCGACAAATAAAAGGTAT CCACTAGGATGAGTCATCATCGCGCACACCATCACAGGCTAGCATAATGA TGGTGCTCAGCATCACAGCGGCGAAAGACTGGGAGCTCCGTCCACTCGAC GTCGTCATGGCGTACCTGGAGGCGAACGTAAGAAAAGAACTGTACATCGA GCTACCTAAAGACTATCGTGAGTCCTGCGACCAGGAGGGCCGGCTGCAAA AGGCGATGTACGGCCTTGCGCACACCGGATTGTTATGGTAA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig96521:1893..2183-

>mRNA_F-distichus_contig96521.19112.1 ID=mRNA_F-distichus_contig96521.19112.1|Name=mRNA_F-distichus_contig96521.19112.1|organism=Fucus distichus monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at F-distichus_contig96521:1893..2183- (Fucus distichus monoicous)
ATGATGGTGCTCAGCATCACAGCGGCGAAAGACTGGGAGCTCCGTCCACT
CGACGTCGTCATGGCGTACCTGGAGGCGAACGTAAGAAAAGAACTGTACA
TCGAGCTACCTAAAGACTATCGTGAGTCCTGCGACCAGGAGGGCCGGCTG
CAAAAGGCGATGTACGGCCTTGCGCACACCGGATTGTTATGGTAAATGAT
GGTGCTCAGCATCACAGCGGCGAAAGACTGGGAGCTCCGTCCACTCGACG
TCGTCATGGCGTACCTGGAGGCGAACGTAAGAAAAGAACTGTACATCGAG
CTACCTAAAGACTATCGTGAGTCCTGCGACCAGGAGGGCCGGCTGCAAAA
GGCGATGTACGGCCTTGCGCACACCGGATTGTTATGGTAA
back to top