mRNA_F-distichus_contig96521.19112.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: F2U8R8_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U8R8_SALR5) HSP 1 Score: 71.2 bits (173), Expect = 8.190e-14 Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 1
Query: 1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRESCD-------QEGRLQKAMYGLAHTGLLW 288
++K R+VA+GF Q GI D++ + TP+ +I+ VL+++ + +L LD AYL+A++++ELY+ELP + + D + RL K +YGL G W
Sbjct: 19 RFKARWVAKGFSQRPGIDFDQTYAPTPAAKTILTVLAVSLQRRHQLHQLDFKSAYLQADLKEELYMELPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAW 121
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: UPI001D017C4A (uncharacterized protein LOC123068095 n=1 Tax=Triticum aestivum TaxID=4565 RepID=UPI001D017C4A) HSP 1 Score: 74.3 bits (181), Expect = 1.970e-13 Identity = 33/98 (33.67%), Postives = 61/98 (62.24%), Query Frame = 1
Query: 1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRESCDQEG--RLQKAMYGLAHTGLLW 288
KYK R VA+G+ Q +G+ +E + ++ ++L++ A +DW++ +DV A+L N++KE+Y++ P Y + C++E +L+KA+YGL W
Sbjct: 525 KYKARLVAKGYVQRQGVDYEEVFAPVARIETVRVLLALAAQEDWKVHRMDVKPAFLNGNLKKEVYVKQPLGYEKKCEEEKVYKLRKALYGLKQAPRAW 622
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: A0A060SUE6_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060SUE6_PYCCI) HSP 1 Score: 74.3 bits (181), Expect = 2.010e-13 Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1
Query: 1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRE-SCDQEGRLQKAMYGLAHTGLLW 288
+YK R VA+GF Q G +E+ + TP ASI +L++ A +D EL +D+ AYL +++E+Y++ P+ + E S D RL K++YGL G W
Sbjct: 798 RYKGRLVAKGFSQRPGFDYNETFAPTPKWASIRAILALAALEDLELESVDISSAYLNGELKEEVYMKQPEGFEEKSPDWVWRLLKSLYGLKQAGRCW 894
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: A0A060SIJ8_PYCCI (Integrase catalytic domain-containing protein n=2 Tax=Trametes TaxID=5324 RepID=A0A060SIJ8_PYCCI) HSP 1 Score: 74.3 bits (181), Expect = 2.020e-13 Identity = 38/97 (39.18%), Postives = 59/97 (60.82%), Query Frame = 1
Query: 1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRE-SCDQEGRLQKAMYGLAHTGLLW 288
+YK R VA+GF Q G +E+ + TP ASI +L++ A +D EL +D+ AYL +++E+Y++ P+ + E S D RL K++YGL G W
Sbjct: 973 RYKGRLVAKGFSQRPGFDYNETFAPTPKWASIRAILALAALEDLELESVDISSAYLNGELKEEVYMKQPEGFEEKSPDWVWRLLKSLYGLKQAGRCW 1069
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: J7S0T6_KAZNA (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Kazachstania naganishii (strain ATCC MYA-139 / BCRC 22969 / CBS 8797 / KCTC 17520 / NBRC 10181 / NCYC 3082 / Yp74L-3) TaxID=1071383 RepID=J7S0T6_KAZNA) HSP 1 Score: 73.6 bits (179), Expect = 3.720e-13 Identity = 35/95 (36.84%), Postives = 58/95 (61.05%), Query Frame = 1
Query: 4 YKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRESCDQEGRLQKAMYGLAHTGLLW 288
YK R V QGFRQ +G+ DE+ + S+ + L+I A + ++ +DVV A+L + + KEL+++ P Y+ + D +L+ A+YGL + LLW
Sbjct: 565 YKARVVVQGFRQTEGLDYDETFAPVIRYESVRLFLAIFACQGVKVHQMDVVTAFLNSPIDKELFVKPPVSYKSTGDSVWKLRSALYGLKQSPLLW 659
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: F2U4Z2_SALR5 (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U4Z2_SALR5) HSP 1 Score: 72.0 bits (175), Expect = 7.990e-13 Identity = 37/103 (35.92%), Postives = 62/103 (60.19%), Query Frame = 1
Query: 1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRESCD-------QEGRLQKAMYGLAHTGLLW 288
++K R+VA+GF Q GI D++ + TP+ +I+ VL+++ + +L LD AYL+A++++ELY+ELP + + D + RL K +YGL G W
Sbjct: 40 RFKARWVAKGFSQRPGIDFDQTYAPTPAAKTILTVLAVSLQRQHQLHQLDFKSAYLQADLKEELYMELPPHFTDIGDGAQRYAGKVCRLLKPLYGLKQAGRAW 142
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: A0A060T044_PYCCI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=3 Tax=Pycnoporus cinnabarinus TaxID=5643 RepID=A0A060T044_PYCCI) HSP 1 Score: 72.4 bits (176), Expect = 9.250e-13 Identity = 37/97 (38.14%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRE-SCDQEGRLQKAMYGLAHTGLLW 288
+YK R VA+GF Q G +E+ + TP ASI +L++ A +D EL +D+ AYL +++E+Y++ P+ + E S D L K++YGL G W
Sbjct: 205 RYKGRLVAKGFSQRPGFDYNETFAPTPKWASIRAILALAALEDLELESVDISSAYLNGELKEEVYMKQPEGFEEKSPDWVWHLLKSLYGLKQAGRCW 301
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: A0A328L1K5_9BACI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Bacillus sp. SRB_331 TaxID=1969379 RepID=A0A328L1K5_9BACI) HSP 1 Score: 71.6 bits (174), Expect = 9.640e-13 Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDY-RESCDQEGRLQKAMYGLAHTGLLW 288
K+K R V +G+ Q GI DE+ S AS+ +V ++ A+ +LR LDVV A+L+A + +E+Y+ PK Y RL+K++YGL GL+W
Sbjct: 175 KFKARLVVKGYSQRPGIDFDETFSPVAHLASVRLVFALAASLKLKLRQLDVVGAFLQAELHEEIYMVQPKGYISHDPSLVCRLKKSLYGLKQAGLVW 271
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: A0A328KU84_9BACI (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=1 Tax=Bacillus sp. SRB_8 TaxID=1969377 RepID=A0A328KU84_9BACI) HSP 1 Score: 71.6 bits (174), Expect = 1.050e-12 Identity = 38/97 (39.18%), Postives = 58/97 (59.79%), Query Frame = 1
Query: 1 KYKCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDY-RESCDQEGRLQKAMYGLAHTGLLW 288
K+K R V +G+ Q GI DE+ S AS+ +V ++ A+ +LR LDVV A+L+A + +E+Y+ PK Y RL+K++YGL GL+W
Sbjct: 87 KFKARLVVKGYSQRPGIDFDETFSPVAHLASVRLVFALAASLKLKLRQLDVVGAFLQAELHEEIYMVQPKGYISHDPSLVCRLKKSLYGLKQAGLVW 183
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Match: A0A1Y1K7V8_PHOPY (Reverse transcriptase Ty1/copia-type domain-containing protein (Fragment) n=2 Tax=Photinus pyralis TaxID=7054 RepID=A0A1Y1K7V8_PHOPY) HSP 1 Score: 71.2 bits (173), Expect = 1.090e-12 Identity = 33/94 (35.11%), Postives = 60/94 (63.83%), Query Frame = 1
Query: 7 KCRFVAQGFRQIKGIH*DESSSRTPSQASIMMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRESCDQEGRLQKAMYGLAHTGLLW 288
K R V +GF+Q +GI E+ S + S+ ++L+ITAAK++++R DV A+L ++ E ++++P+ Y + +LQ+++YGL + LLW
Sbjct: 138 KARLVVRGFQQERGIDFQETYSPVVNMTSLRILLTITAAKEFKIRIFDVKTAFLHGELKDETFMQIPEGYPKKEGMICKLQRSLYGLKQSPLLW 231 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96521.19112.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig96521.19112.1 >prot_F-distichus_contig96521.19112.1 ID=prot_F-distichus_contig96521.19112.1|Name=mRNA_F-distichus_contig96521.19112.1|organism=Fucus distichus monoicous|type=polypeptide|length=65bp MMVLSITAAKDWELRPLDVVMAYLEANVRKELYIELPKDYRESCDQEGRLback to top mRNA from alignment at F-distichus_contig96521:1893..2183- Legend: UTRCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig96521.19112.1 ID=mRNA_F-distichus_contig96521.19112.1|Name=mRNA_F-distichus_contig96521.19112.1|organism=Fucus distichus monoicous|type=mRNA|length=291bp|location=Sequence derived from alignment at F-distichus_contig96521:1893..2183- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig96521:1893..2183- >mRNA_F-distichus_contig96521.19112.1 ID=mRNA_F-distichus_contig96521.19112.1|Name=mRNA_F-distichus_contig96521.19112.1|organism=Fucus distichus monoicous|type=CDS|length=390bp|location=Sequence derived from alignment at F-distichus_contig96521:1893..2183- (Fucus distichus monoicous)back to top |