mRNA_F-distichus_contig9647.19105.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9647.19105.1
Unique NamemRNA_F-distichus_contig9647.19105.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9647.19105.1 vs. uniprot
Match: A0A6H5K398_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K398_9PHAE)

HSP 1 Score: 173 bits (439), Expect = 3.410e-48
Identity = 101/190 (53.16%), Postives = 122/190 (64.21%), Query Frame = 1 
Query:   13 DGLDYDPKTLVSYTVCGGIGYDRPEVLLQAVVYARGDGPACVMPPLDDGEDPGDLIDVDVL--------GSVSGDQEDVFDCNVDGPALAAVGRALGLH-HDPSESDSNG-TAEEEGLDDLSEETG---------------------GPADGGMTLSDLVWWIMLFPFFEKEFDMVEVVASSVFGDDGSD 489
            +GLDY+P+TLVSY++ GGIGYD P  LLQA+VYARGDGPACVMPP                        GSV  DQEDVFDC+V+GPALAA+GRALGLH  DP  SDS+  ++ ++G D   +++G                     G   G MT SDLVWW++LFPFFEKEFD+VEVVASSVFG+D SD
Sbjct:  384 EGLDYEPRTLVSYSISGGIGYDAPATLLQALVYARGDGPACVMPPXXXXXXXXXXXXXXXXXXXXXXXGGSVCNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSHSDSSSDDGGDVRMKDSGARPSASAKGPEKESDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDLVEVVASSVFGEDDSD 573
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BLAST of mRNA_F-distichus_contig9647.19105.1 vs. uniprot
Match: D8LFD8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFD8_ECTSI)

HSP 1 Score: 173 bits (438), Expect = 5.450e-48
Identity = 105/196 (53.57%), Postives = 124/196 (63.27%), Query Frame = 1 
Query:   13 DGLDYDPKTLVSYTVCGGIGYDRPEVLLQAVVYARGDGPACVMPPLDDGEDPGDLIDVDVL---------GSVSGDQEDVFDCNVDGPALAAVGRALGLH-HDPSESDSNG-TAEEEGLDDLSEETG---------------------GPADGGMTLSDLVWWIMLFPFFEKEFDMVEVVASSVFG-DDGSDSDDG 501
            +GLDY+P+TLVSY++ GGIGYD P  LLQA+VYARGDGPACVMPP                         GS   DQEDVFDC+V+GPALAA+GRALGLH  DP  SDS+  +A ++G D   +++G                     G   G MT SDLVWW++LFPFFEKEFD+VEVVASSVFG DD  DSDDG
Sbjct:  393 EGLDYEPRTLVSYSISGGIGYDAPATLLQALVYARGDGPACVMPPXXXXXXXXXXXXXXXXXXXXXXXXXGSACNDQEDVFDCDVNGPALAALGRALGLHTEDPPTSDSDSDSASDDGGDVRMKDSGARPSASAKGPEKEPDTADGEPGKGIGSMTQSDLVWWLLLFPFFEKEFDVVEVVASSVFGEDDLDDSDDG 588
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9647.19105.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K398_9PHAE3.410e-4853.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LFD8_ECTSI5.450e-4853.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9647contigF-distichus_contig9647:191..1301 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score177.9
Seed ortholog evalue3.8e-42
Seed eggNOG ortholog2880.D8LFD8
Hectar predicted targeting categoryother localisation
EggNOG OGs2EXJ4@1,2SZ7F@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_005910.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size501
Cds size501
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.7772179-CDS-F-distichus_contig9647:190..3881622931142.7772179-CDS-F-distichus_contig9647:190..388Fucus distichus monoicousCDSF-distichus_contig9647 191..388 +
1690886176.5071661-CDS-F-distichus_contig9647:190..3881690886176.5071661-CDS-F-distichus_contig9647:190..388Fucus distichus monoicousCDSF-distichus_contig9647 191..388 +
1622931142.7932684-CDS-F-distichus_contig9647:998..13011622931142.7932684-CDS-F-distichus_contig9647:998..1301Fucus distichus monoicousCDSF-distichus_contig9647 999..1301 +
1690886176.5292919-CDS-F-distichus_contig9647:998..13011690886176.5292919-CDS-F-distichus_contig9647:998..1301Fucus distichus monoicousCDSF-distichus_contig9647 999..1301 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9647.19105.1prot_F-distichus_contig9647.19105.1Fucus distichus monoicouspolypeptideF-distichus_contig9647 191..1301 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9647.19105.1

>prot_F-distichus_contig9647.19105.1 ID=prot_F-distichus_contig9647.19105.1|Name=mRNA_F-distichus_contig9647.19105.1|organism=Fucus distichus monoicous|type=polypeptide|length=167bp
MQSGDGLDYDPKTLVSYTVCGGIGYDRPEVLLQAVVYARGDGPACVMPPL
DDGEDPGDLIDVDVLGSVSGDQEDVFDCNVDGPALAAVGRALGLHHDPSE
SDSNGTAEEEGLDDLSEETGGPADGGMTLSDLVWWIMLFPFFEKEFDMVE
VVASSVFGDDGSDSDDG
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mRNA from alignment at F-distichus_contig9647:191..1301+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9647.19105.1 ID=mRNA_F-distichus_contig9647.19105.1|Name=mRNA_F-distichus_contig9647.19105.1|organism=Fucus distichus monoicous|type=mRNA|length=1111bp|location=Sequence derived from alignment at F-distichus_contig9647:191..1301+ (Fucus distichus monoicous)
ATGCAGTCTGGCGACGGCCTGGATTATGACCCCAAGACCTTGGTGTCGTA
CACCGTCTGCGGCGGGATCGGCTACGATCGCCCGGAAGTGCTGCTGCAAG
CGGTCGTGTACGCCAGAGGGGACGGACCGGCGTGCGTCATGCCTCCGCTG
GACGACGGAGAGGATCCGGGTGATTTGATCGACGTTGATGTGTTGGGTGT
TTCAACTAGGCCTCACACCCCTTTCATCGGCTACAGCAGTACTCGCAAGT
TGTGTGCGGTAGCGCCTTTTCGCGGTCGGTATTATTAGCGACGCGGGAAG
TAGCCCCGGTCTTGGCTCGTGATGCCCGAGCACTGACCGGACGTTATGCT
TGCGTCGGGATTCGGATGCCAGTCGCAACTTTTCGCCTTCGCGGTATCGT
GCCACCGACGAGGCGCTGGCATTGGTTGGTATGGAGGTCTTTGGATGGCA
CTCGAAGGGCTTTCTCACTGACCCAGATCGCCCTACATCACGAACGGGGT
GGCGGATTTTAGAGATCCGATCATTGTGACTCGCGCGTTGTTTGCGCGTG
GCATGCAGAATTGAATCGCGTGTATAACCCACATGCCTTTCCTAGTGTTG
GAACTCTTCTGGTGATATCGCGAGGAATTATTATTCGCGTCAGAGATGCG
GTGCTCGACGTCCAGAACATTGTGAGGTATTCGATTCTACGCACCCCCGC
CGTGTTCTCTCCCTCCTCACCTTGCCTTACCTTACCTTTCCTTACCCGCG
ATGCATGCCCTCTCCCTGCCGGTATTTCGTTATTGTTTTTAATGATTACC
TTGTAGAGAGTGTTTCCGGCGACCAGGAGGACGTGTTCGACTGCAACGTC
GATGGCCCGGCGTTGGCGGCCGTGGGGCGAGCGCTGGGGCTGCACCATGA
CCCATCAGAGTCGGACTCCAATGGCACCGCGGAGGAGGAGGGTTTGGACG
ATTTAAGTGAAGAGACCGGCGGCCCAGCCGACGGGGGAATGACGCTGTCT
GACTTGGTGTGGTGGATCATGTTGTTCCCGTTTTTTGAGAAGGAGTTCGA
TATGGTGGAGGTCGTTGCGTCGAGCGTGTTCGGAGACGACGGTTCCGATT
CGGACGACGGC
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Coding sequence (CDS) from alignment at F-distichus_contig9647:191..1301+

>mRNA_F-distichus_contig9647.19105.1 ID=mRNA_F-distichus_contig9647.19105.1|Name=mRNA_F-distichus_contig9647.19105.1|organism=Fucus distichus monoicous|type=CDS|length=1002bp|location=Sequence derived from alignment at F-distichus_contig9647:191..1301+ (Fucus distichus monoicous)
ATGCAGTCTGGCGACGGCCTGGATTATGACCCCAAGACCTTGGTGTCGTA
CACCGTCTGCGGCGGGATCGGCTACGATCGCCCGGAAGTGCTGCTGCAAG
CGGTCGTGTACGCCAGAGGGGACGGACCGGCGTGCGTCATGCCTCCGCTG
GACGACGGAGAGGATCCGGGTGATTTGATCGACGTTGATGTGTTGGGTAT
GCAGTCTGGCGACGGCCTGGATTATGACCCCAAGACCTTGGTGTCGTACA
CCGTCTGCGGCGGGATCGGCTACGATCGCCCGGAAGTGCTGCTGCAAGCG
GTCGTGTACGCCAGAGGGGACGGACCGGCGTGCGTCATGCCTCCGCTGGA
CGACGGAGAGGATCCGGGTGATTTGATCGACGTTGATGTGTTGGGTAGTG
TTTCCGGCGACCAGGAGGACGTGTTCGACTGCAACGTCGATGGCCCGGCG
TTGGCGGCCGTGGGGCGAGCGCTGGGGCTGCACCATGACCCATCAGAGTC
GGACTCCAATGGCACCGCGGAGGAGGAGGGTTTGGACGATTTAAGTGAAG
AGACCGGCGGCCCAGCCGACGGGGGAATGACGCTGTCTGACTTGGTGTGG
TGGATCATGTTGTTCCCGTTTTTTGAGAAGGAGTTCGATATGGTGGAGGT
CGTTGCGTCGAGCGTGTTCGGAGACGACGGTTCCGATTCGGACGACGGCA
GTGTTTCCGGCGACCAGGAGGACGTGTTCGACTGCAACGTCGATGGCCCG
GCGTTGGCGGCCGTGGGGCGAGCGCTGGGGCTGCACCATGACCCATCAGA
GTCGGACTCCAATGGCACCGCGGAGGAGGAGGGTTTGGACGATTTAAGTG
AAGAGACCGGCGGCCCAGCCGACGGGGGAATGACGCTGTCTGACTTGGTG
TGGTGGATCATGTTGTTCCCGTTTTTTGAGAAGGAGTTCGATATGGTGGA
GGTCGTTGCGTCGAGCGTGTTCGGAGACGACGGTTCCGATTCGGACGACG
GC
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