mRNA_F-distichus_contig96452.19101.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96452.19101.1
Unique NamemRNA_F-distichus_contig96452.19101.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96452.19101.1 vs. uniprot
Match: D8LJE4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJE4_ECTSI)

HSP 1 Score: 76.6 bits (187), Expect = 4.930e-14
Identity = 39/107 (36.45%), Postives = 56/107 (52.34%), Query Frame = -1 
Query:   22 VDPTCRWFHTRGISKKGFRACEPPDGGSVENQPQLWACVQESMCDLTDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLVKENIDSVDHFFVNHLDAITQWISLRYLL 342
            V P+C W H   ++ +  + C   +G  V N      C+Q+  C + DD +Q+ +LRDPRAV VSS+F L     P       +SVD F +  L  I  +I LRYL+
Sbjct:  212 VPPSCPWQHVDNVTPEN-KGCTTVNGRRVGNYTDTVECLQQHPCRIVDDRIQMLILRDPRAVAVSSFFHLKTHHHPFWKHLTDESVDSFVLRMLPTICHFIHLRYLV 317
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BLAST of mRNA_F-distichus_contig96452.19101.1 vs. uniprot
Match: A0A6H5KDV7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KDV7_9PHAE)

HSP 1 Score: 72.4 bits (176), Expect = 3.660e-13
Identity = 40/114 (35.09%), Postives = 62/114 (54.39%), Query Frame = -1 
Query:    1 VDPTCRWFHTRGISKKGFRACEPPDGGSVENQPQLWACVQESMCDLTDDSLQIAVLRDPRAVTVSSYFQLARQKSPMLVKENIDSVDHFFVNHLDAITQWISLRYLLFTQLASE 342
            V+ +C W H  G   +G   C   DG  VE    LWAC+Q++ C++TD+ LQ   +RDPRAV VS+YF    + +    ++   S+D   +  L  +  + +LR++LF  L S 
Sbjct:   19 VNESCPWSHGSGTVHEGD-GCWSFDGHPVETGADLWACMQKTPCEITDNRLQFVPIRDPRAVAVSTYFHRVHKDNNY--QKLHPSLDQTVLEILPVLCHFTTLRHILFGGLLSN 129
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96452.19101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LJE4_ECTSI4.930e-1436.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KDV7_9PHAE3.660e-1335.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96452contigF-distichus_contig96452:1363..1704 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size344
Cds size342
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931142.2519386-CDS-F-distichus_contig96452:1362..17041622931142.2519386-CDS-F-distichus_contig96452:1362..1704Fucus distichus monoicousCDSF-distichus_contig96452 1363..1704 +
1690886176.2640624-CDS-F-distichus_contig96452:1362..17041690886176.2640624-CDS-F-distichus_contig96452:1362..1704Fucus distichus monoicousCDSF-distichus_contig96452 1363..1704 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96452.19101.1prot_F-distichus_contig96452.19101.1Fucus distichus monoicouspolypeptideF-distichus_contig96452 1363..1704 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96452.19101.1

>prot_F-distichus_contig96452.19101.1 ID=prot_F-distichus_contig96452.19101.1|Name=mRNA_F-distichus_contig96452.19101.1|organism=Fucus distichus monoicous|type=polypeptide|length=114bp
LRRELGEEQVSEADPLGDGVQMVHEKVVDGIDILLDQHGRLLPGELKIGA
DCHGARVAKHRNLEAIVREVAHGLLHARPQLGLIFHRPAVRRLARPEALL
GDAASVKPAASRVN
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mRNA from alignment at F-distichus_contig96452:1363..1704+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96452.19101.1 ID=mRNA_F-distichus_contig96452.19101.1|Name=mRNA_F-distichus_contig96452.19101.1|organism=Fucus distichus monoicous|type=mRNA|length=342bp|location=Sequence derived from alignment at F-distichus_contig96452:1363..1704+ (Fucus distichus monoicous)
CTCCGACGCGAGCTGGGTGAAGAGCAAGTATCGGAGGCTGATCCACTGGG
TGATGGCGTCCAGATGGTTCACGAAAAAGTGGTCGACGGAATCGATATTC
TCCTTGACCAGCATGGGCGACTTCTGCCGGGCGAGCTGAAAATAGGAGCT
GACTGTCACGGCGCGCGGGTCGCGAAGCACCGCAATCTGGAGGCTATCGT
CCGTGAGGTCGCACATGGACTCCTGCACGCACGCCCACAGCTGGGGTTGA
TTTTCCACCGACCCGCCGTCCGGCGGCTCGCACGCCCGGAAGCCCTTCTT
GGAGATGCCGCGAGTGTGAAACCAGCGGCAAGTCGGGTCAAC
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Coding sequence (CDS) from alignment at F-distichus_contig96452:1363..1704+

>mRNA_F-distichus_contig96452.19101.1 ID=mRNA_F-distichus_contig96452.19101.1|Name=mRNA_F-distichus_contig96452.19101.1|organism=Fucus distichus monoicous|type=CDS|length=684bp|location=Sequence derived from alignment at F-distichus_contig96452:1363..1704+ (Fucus distichus monoicous)
CTCCGACGCGAGCTGGGTGAAGAGCAAGTATCGGAGGCTGATCCACTGGG
TGATGGCGTCCAGATGGTTCACGAAAAAGTGGTCGACGGAATCGATATTC
TCCTTGACCAGCATGGGCGACTTCTGCCGGGCGAGCTGAAAATAGGAGCT
GACTGTCACGGCGCGCGGGTCGCGAAGCACCGCAATCTGGAGGCTATCGT
CCGTGAGGTCGCACATGGACTCCTGCACGCACGCCCACAGCTGGGGTTGA
TTTTCCACCGACCCGCCGTCCGGCGGCTCGCACGCCCGGAAGCCCTTCTT
GGAGATGCCGCGAGTGTGAAACCAGCGGCAAGTCGGGTCAACCTCCGACG
CGAGCTGGGTGAAGAGCAAGTATCGGAGGCTGATCCACTGGGTGATGGCG
TCCAGATGGTTCACGAAAAAGTGGTCGACGGAATCGATATTCTCCTTGAC
CAGCATGGGCGACTTCTGCCGGGCGAGCTGAAAATAGGAGCTGACTGTCA
CGGCGCGCGGGTCGCGAAGCACCGCAATCTGGAGGCTATCGTCCGTGAGG
TCGCACATGGACTCCTGCACGCACGCCCACAGCTGGGGTTGATTTTCCAC
CGACCCGCCGTCCGGCGGCTCGCACGCCCGGAAGCCCTTCTTGGAGATGC
CGCGAGTGTGAAACCAGCGGCAAGTCGGGTCAAC
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