mRNA_F-distichus_contig96415.19098.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96415.19098.1
Unique NamemRNA_F-distichus_contig96415.19098.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96415.19098.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96415contigF-distichus_contig96415:3..389 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size201
Cds size201
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.9912431-CDS-F-distichus_contig96415:2..1341622931141.9912431-CDS-F-distichus_contig96415:2..134Fucus distichus monoicousCDSF-distichus_contig96415 3..134 -
1690886176.174039-CDS-F-distichus_contig96415:2..1341690886176.174039-CDS-F-distichus_contig96415:2..134Fucus distichus monoicousCDSF-distichus_contig96415 3..134 -
1622931142.0076404-CDS-F-distichus_contig96415:320..3891622931142.0076404-CDS-F-distichus_contig96415:320..389Fucus distichus monoicousCDSF-distichus_contig96415 321..389 -
1690886176.1849782-CDS-F-distichus_contig96415:320..3891690886176.1849782-CDS-F-distichus_contig96415:320..389Fucus distichus monoicousCDSF-distichus_contig96415 321..389 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96415.19098.1prot_F-distichus_contig96415.19098.1Fucus distichus monoicouspolypeptideF-distichus_contig96415 3..389 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96415.19098.1

>prot_F-distichus_contig96415.19098.1 ID=prot_F-distichus_contig96415.19098.1|Name=mRNA_F-distichus_contig96415.19098.1|organism=Fucus distichus monoicous|type=polypeptide|length=67bp
SHIQRIVLATEETTVTQQVSHSPSNFDRLGLLSPTHDQRSQQKTGRITLQ
PVLINKKSKFLKATQSY
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mRNA from alignment at F-distichus_contig96415:3..389-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96415.19098.1 ID=mRNA_F-distichus_contig96415.19098.1|Name=mRNA_F-distichus_contig96415.19098.1|organism=Fucus distichus monoicous|type=mRNA|length=387bp|location=Sequence derived from alignment at F-distichus_contig96415:3..389- (Fucus distichus monoicous)
TCACACATTCAGCGTATTGTCCTTGCAACTGAAGAAACTACGGTGACACA
ACAAGTCAGCCATAGTCCTGTCAAATGCTAATAATCCCGCTTGTGGTCAC
AAAGAGGTACAAAGGTCAACGGGCCACATCATGGTGGCAACCCGCTACTC
GGACCAGCAGGGATCCAAATCGCGACAAAAAGTTATGCGAATCTACAGGC
AATGGCACCGACCAATATCAAAACGGTTCATCAAACATCCATACTCCATA
TCGAGAGCAACTTCGATCGACTCGGATTGTTATCGCCTACCCACGACCAG
CGTTCTCAGCAAAAAACCGGAAGAATTACGCTCCAACCAGTTTTGATCAA
CAAAAAGTCCAAGTTTCTCAAGGCCACACAATCGTAC
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Coding sequence (CDS) from alignment at F-distichus_contig96415:3..389-

>mRNA_F-distichus_contig96415.19098.1 ID=mRNA_F-distichus_contig96415.19098.1|Name=mRNA_F-distichus_contig96415.19098.1|organism=Fucus distichus monoicous|type=CDS|length=402bp|location=Sequence derived from alignment at F-distichus_contig96415:3..389- (Fucus distichus monoicous)
TCACACATTCAGCGTATTGTCCTTGCAACTGAAGAAACTACGGTGACACA
ACAAGTCAGCCATAGTCCTTCACACATTCAGCGTATTGTCCTTGCAACTG
AAGAAACTACGGTGACACAACAAGTCAGCCATAGTCCTAGCAACTTCGAT
CGACTCGGATTGTTATCGCCTACCCACGACCAGCGTTCTCAGCAAAAAAC
CGGAAGAATTACGCTCCAACCAGTTTTGATCAACAAAAAGTCCAAGTTTC
TCAAGGCCACACAATCGTACAGCAACTTCGATCGACTCGGATTGTTATCG
CCTACCCACGACCAGCGTTCTCAGCAAAAAACCGGAAGAATTACGCTCCA
ACCAGTTTTGATCAACAAAAAGTCCAAGTTTCTCAAGGCCACACAATCGT
AC
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