mRNA_F-distichus_contig9639.19094.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9639.19094.1
Unique NamemRNA_F-distichus_contig9639.19094.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9639.19094.1 vs. uniprot
Match: D7G0U8_ECTSI (Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U8_ECTSI)

HSP 1 Score: 53.5 bits (127), Expect = 4.240e-6
Identity = 31/56 (55.36%), Postives = 35/56 (62.50%), Query Frame = 1 
Query:   76 RQTFASSGGDANSS----KGYTCGGDEEWYDGEWKGGRIHGTAGEYHFSN-GDVYL 228
            RQTFAS GG         K    GG+ EWYDG+WK G  HG  GEYHF+N GDVY+
Sbjct:  134 RQTFASGGGGGGRGDEPEKVAATGGENEWYDGQWKSGAFHGQ-GEYHFANSGDVYV 188
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BLAST of mRNA_F-distichus_contig9639.19094.1 vs. uniprot
Match: D7G0U9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0U9_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 5.250e-6
Identity = 25/57 (43.86%), Postives = 32/57 (56.14%), Query Frame = 1 
Query:  133 GGDEEWYDGEWKGGRIHGTAGEYHFSNGDVYLGDWVEEMMEGSGKLT-GADGDTYEG 300
            GG+ EWYD +WK G  HG  G     +GD+ +G WV   M G GK+  G +G   EG
Sbjct:   45 GGENEWYDKQWKAGACHGQGGIRFAGSGDMCVGSWVGNQMHGKGKIVHGGEGGEDEG 101
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BLAST of mRNA_F-distichus_contig9639.19094.1 vs. uniprot
Match: A0A813HV80_POLGL (Hypothetical protein n=2 Tax=Polarella glacialis TaxID=89957 RepID=A0A813HV80_POLGL)

HSP 1 Score: 49.7 bits (117), Expect = 9.580e-5
Identity = 28/77 (36.36%), Postives = 39/77 (50.65%), Query Frame = 1 
Query:    1 QGTYTYVNGDVYAGSWQNNQKNGKGRQTFASSGGDANSSKGYTCGGDEEWYDGEWKGGRIHGTAGEYHFSNGDVYLG 231
            +GT++YVNGDVY G W+  +K+G G   +A  G                   GEW+GG+I   +G + F NG  Y G
Sbjct:  215 EGTFSYVNGDVYVGQWKEGKKHGNGSYVYAKDG---------------TKLVGEWEGGKI--VSGRWIFPNGTFYSG 274
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9639.19094.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0U8_ECTSI4.240e-655.36Phosphatidylinositol-4-phosphate 5-kinase n=1 Tax=... [more]
D7G0U9_ECTSI5.250e-643.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A813HV80_POLGL9.580e-536.36Hypothetical protein n=2 Tax=Polarella glacialis T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9639contigF-distichus_contig9639:5044..5771 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size303
Cds size303
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931141.4241679-CDS-F-distichus_contig9639:5043..52331622931141.4241679-CDS-F-distichus_contig9639:5043..5233Fucus distichus monoicousCDSF-distichus_contig9639 5044..5233 +
1690886175.8480709-CDS-F-distichus_contig9639:5043..52331690886175.8480709-CDS-F-distichus_contig9639:5043..5233Fucus distichus monoicousCDSF-distichus_contig9639 5044..5233 +
1622931141.4665287-CDS-F-distichus_contig9639:5658..57711622931141.4665287-CDS-F-distichus_contig9639:5658..5771Fucus distichus monoicousCDSF-distichus_contig9639 5659..5771 +
1690886175.8604126-CDS-F-distichus_contig9639:5658..57711690886175.8604126-CDS-F-distichus_contig9639:5658..5771Fucus distichus monoicousCDSF-distichus_contig9639 5659..5771 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9639.19094.1prot_F-distichus_contig9639.19094.1Fucus distichus monoicouspolypeptideF-distichus_contig9639 5044..5771 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9639.19094.1

>prot_F-distichus_contig9639.19094.1 ID=prot_F-distichus_contig9639.19094.1|Name=mRNA_F-distichus_contig9639.19094.1|organism=Fucus distichus monoicous|type=polypeptide|length=101bp
QGTYTYVNGDVYAGSWQNNQKNGKGRQTFASSGGDANSSKGYTCGGDEEW
YDGEWKGGRIHGTAGEYHFSNGDVYLGDWVEEMMEGSGKLTGADGDTYEG
E
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mRNA from alignment at F-distichus_contig9639:5044..5771+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9639.19094.1 ID=mRNA_F-distichus_contig9639.19094.1|Name=mRNA_F-distichus_contig9639.19094.1|organism=Fucus distichus monoicous|type=mRNA|length=728bp|location=Sequence derived from alignment at F-distichus_contig9639:5044..5771+ (Fucus distichus monoicous)
CAGGGCACCTACACCTACGTGAACGGAGATGTTTATGCCGGTAGCTGGCA
GAACAACCAAAAGAACGGTAAGGGACGCCAAACATTCGCCAGCAGTGGCG
GTGATGCAAATAGCTCCAAGGGATATACATGTGGTGGAGACGAGGAGTGG
TATGACGGAGAGTGGAAGGGCGGACGAATCCATGGTACAGGTATGGAAAA
TATCCGAGTTGGTGATAGTCCGACCCCGGCCCCCCACTCCCTTATTGCTA
AGCAGCTACCGGTATATGTAAATACATTGTCGAGATTGATCACACGTAAG
AGCCTTACTTATAGCATACACGCGACTCTCGCTACTCAGTCTAGGATTAA
ACCTAGGCTCAGCCGACAACCGCACACGGACAGCACACCCCCAGCGAGGA
TTGTGGCGATCTTCACGCCCGAGAGGGGTCTCGCTCATACCTTGTGGTAC
TGTAGAAGGAAACAACCTCGAGGATTTTGTTTTGTTTTGTTTCATTCAAG
GAGGGGATGGCCTTGGGCGATTGCGCTTTCGTTTACCGGGGCAGAAATAC
GAGCAAAGATGTGAGCATCTTTCCGCTGCTTTCTGTTCCCAAACATGGGA
TGGTTTCGTGTGGAGCAGGCGAGTACCACTTTTCGAACGGTGACGTGTAT
CTTGGTGACTGGGTTGAGGAGATGATGGAGGGATCCGGAAAGCTGACTGG
CGCCGACGGAGACACGTACGAGGGTGAG
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Coding sequence (CDS) from alignment at F-distichus_contig9639:5044..5771+

>mRNA_F-distichus_contig9639.19094.1 ID=mRNA_F-distichus_contig9639.19094.1|Name=mRNA_F-distichus_contig9639.19094.1|organism=Fucus distichus monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at F-distichus_contig9639:5044..5771+ (Fucus distichus monoicous)
CAGGGCACCTACACCTACGTGAACGGAGATGTTTATGCCGGTAGCTGGCA
GAACAACCAAAAGAACGGTAAGGGACGCCAAACATTCGCCAGCAGTGGCG
GTGATGCAAATAGCTCCAAGGGATATACATGTGGTGGAGACGAGGAGTGG
TATGACGGAGAGTGGAAGGGCGGACGAATCCATGGTACAGCAGGGCACCT
ACACCTACGTGAACGGAGATGTTTATGCCGGTAGCTGGCAGAACAACCAA
AAGAACGGTAAGGGACGCCAAACATTCGCCAGCAGTGGCGGTGATGCAAA
TAGCTCCAAGGGATATACATGTGGTGGAGACGAGGAGTGGTATGACGGAG
AGTGGAAGGGCGGACGAATCCATGGTACAGCAGGCGAGTACCACTTTTCG
AACGGTGACGTGTATCTTGGTGACTGGGTTGAGGAGATGATGGAGGGATC
CGGAAAGCTGACTGGCGCCGACGGAGACACGTACGAGGGTGAGCAGGCGA
GTACCACTTTTCGAACGGTGACGTGTATCTTGGTGACTGGGTTGAGGAGA
TGATGGAGGGATCCGGAAAGCTGACTGGCGCCGACGGAGACACGTACGAG
GGTGAG
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