mRNA_F-distichus_contig9634.19088.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9634.19088.1
Unique NamemRNA_F-distichus_contig9634.19088.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig9634.19088.1 vs. uniprot
Match: D7G107_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G107_ECTSI)

HSP 1 Score: 223 bits (567), Expect = 3.040e-71
Identity = 110/170 (64.71%), Postives = 126/170 (74.12%), Query Frame = 1
Query:    1 LPQILALDPSCCGPTAPGPNDMVIHYRNYKAELGEEQYEKLHFQDLDFNFYDTVLKSTQDR----PETVWVVGEFHKYNPLVKRLQEEHGNVKIAGMVTDQFRAFCFLSRAPRFIMAQSTFSWWAAFLGNATEVHFPFQPTRKAVTGRHIVVDDDPRYIYRDANGLVVHP 498
            L +I+ALDPSCCGPTAPGP D+VIH+RNY+AEL  EQYEKL F+DLD+ FY+ VL+   +     PETVWVVGEF+   PL KRLQ++H NVK A MV DQF AFCFLSRAPR +MA STFSWW AFLG  TEVHFP     K VTG  I VD+  RY+YRD  G VV P
Sbjct:   43 LRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKDLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTKQNKGVTGPSIAVDEG-RYVYRDEAGRVVPP 211          
BLAST of mRNA_F-distichus_contig9634.19088.1 vs. uniprot
Match: D7G104_ECTSI (Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G104_ECTSI)

HSP 1 Score: 221 bits (562), Expect = 2.700e-68
Identity = 109/170 (64.12%), Postives = 126/170 (74.12%), Query Frame = 1
Query:    1 LPQILALDPSCCGPTAPGPNDMVIHYRNYKAELGEEQYEKLHFQDLDFNFYDTVLKSTQDR----PETVWVVGEFHKYNPLVKRLQEEHGNVKIAGMVTDQFRAFCFLSRAPRFIMAQSTFSWWAAFLGNATEVHFPFQPTRKAVTGRHIVVDDDPRYIYRDANGLVVHP 498
            L +I+ALDPSCCGPTAPGP D+VIH+RNY+AEL  EQYEKL F+DLD+ FY+ VL+   +     PETVWVVGEF+   PL KRLQ++H NVK A MV DQF AFCFLSRAPR +MA STFSWW AFLG  TEVHFP     + VTG  I VD+  RY+YRD  G VV P
Sbjct:  210 LRKIMALDPSCCGPTAPGPGDLVIHHRNYRAELTAEQYEKLIFKDLDYEFYEAVLRDAAESAAGPPETVWVVGEFNDEEPLFKRLQQDHPNVKRAEMVEDQFHAFCFLSRAPRLVMAHSTFSWWVAFLGVGTEVHFPLTRQNQGVTGPSIAVDEG-RYVYRDEAGRVVPP 378          
BLAST of mRNA_F-distichus_contig9634.19088.1 vs. uniprot
Match: F2TVY1_SALR5 (Uncharacterized protein n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2TVY1_SALR5)

HSP 1 Score: 94.0 bits (232), Expect = 2.800e-19
Identity = 56/167 (33.53%), Postives = 94/167 (56.29%), Query Frame = 1
Query:   13 LALDPSCCGPTA-----PGPNDMVIHYRNYKAELGEE-QYEKLH-FQDLDFNFYDTVLKSTQDRP--ETVWVVGEFHKYNPLVKRLQEEHGNVKIAGMVTDQFRA---FCFLSRAPRFIMAQSTFSWWAAFLGNATEVHFPFQPTRKAVTGRHIVVD-DDPRYIYRD 474
            L +D SC    +     PGP D+V+H R Y    GEE +Y+    F DL +++YD +L+  Q +   +TVW+     +++P+ ++L  ++G   I G  +  + +   + F+  A R +M+QST++WWAA+LG+A EVH+P          RH +   D+PRY++ D
Sbjct:  342 LRIDTSCLAAQSLPLSLPGPRDIVVHLRAYHGCEGEEHEYDPTEAFVDLPWDYYDRILQRYQRKGGWDTVWLASRCGEHHPIAQQLMTKYGARVIQGDGSKNWASMHDWLFMRSARRLVMSQSTYAWWAAWLGDAEEVHYPLAGDWWGKGPRHTLYPVDEPRYVFHD 508          
BLAST of mRNA_F-distichus_contig9634.19088.1 vs. uniprot
Match: A0A349D2R7_9BACT (Uncharacterized protein n=1 Tax=Candidatus Peribacteria bacterium TaxID=2053688 RepID=A0A349D2R7_9BACT)

HSP 1 Score: 68.6 bits (166), Expect = 1.130e-10
Identity = 46/152 (30.26%), Postives = 72/152 (47.37%), Query Frame = 1
Query:   19 LDPSCCGPTAPGPNDMVIHYRNYKAELGEEQYEKLHFQDLDFNFYDTVLKSTQDRPETVWVVGEFHKYNPLVKRLQEEHGNVKIAGMVTDQFRAFCFLSRAPRFIMAQSTFSWWAAFLGNATEVHFPFQPTRKAVTGRHIV--VDDDPRYIY 468
            + P+C     P P  +V+H R          Y ++    L F+FY  VLK   D    V    +    +P  ++ +     +K   ++ D    FCFL  A +  ++QST+SWWAA+L +ATE++FP   T    + R  +    D+PRY Y
Sbjct:  101 MQPACSAAAKPDPRALVMHVRR-------GDYLRVEGYPLPFSFYKDVLKRA-DFDHLVICTDD--PRDPFFRKFRHHDPEIKSGDLLED----FCFLKSAKKIALSQSTYSWWAAYLSDATEIYFPRSLTGPFSSSRPDIDLEVDEPRYRY 238          
BLAST of mRNA_F-distichus_contig9634.19088.1 vs. uniprot
Match: F0YD20_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YD20_AURAN)

HSP 1 Score: 62.8 bits (151), Expect = 2.320e-8
Identity = 42/154 (27.27%), Postives = 72/154 (46.75%), Query Frame = 1
Query:   49 PGPNDMVIHYRNYKAELGEEQYEKLHFQDLDFNFYDTVLKSTQDRPETVWVVGEFHKYNP-LVKRLQEEHGNVKIAGMVTDQFRA---------FCFLSRAPRFIMAQSTFSWWAAFLGNATEVHFPFQPTRKAVTGRHIVVDDDPRYIYRDAN 480
            P P+D+V+H R   + L   +Y          N+++ + +  +  P  + VV    +  P +V+ L E  G  ++   + D             F +++RA R ++ +ST+SWWAA+LG A EVH P        +G   V   +P Y++ D N
Sbjct:  280 PRPDDVVVHVRLCDSPLHFYKYYSYE------NYFEHIFRHLEPAPARIRVVTGCDERKPGVVRELVERLGAERVFTAIADGTSKKPHRSVAADFLYMTRAKRLVVTESTYSWWAAYLGAADEVHAP-------ASGVVPVPYQEPHYVFHDIN 420          
BLAST of mRNA_F-distichus_contig9634.19088.1 vs. uniprot
Match: A0A7S3JMN3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JMN3_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.030e-8
Identity = 51/160 (31.87%), Postives = 75/160 (46.88%), Query Frame = 1
Query:   49 PGPNDMVIHYRNYKAELGEEQYEKLHFQDLDFNFYDTVLKSTQDRP------------ETVWVVGEFHK--YNPLVKR-LQEEHGNV---KIAGMVTDQFRAFCFLSRAPRFIMAQSTFSWWAAFLGNATEVHFPFQPTRKAVTGRHIVVDDDPRYIYRD 474
            P   D+VIH R     L    Y    + D+D N++  +L+  + RP            +   V  E  K  ++ +V R L  +  N    K +G+  D    F +L+ A R I+ +STFSWWAA L NATE+H P        +G   V  DDPR+++ D
Sbjct:  359 PSTKDLVIHIR-----LCNAPYHVYKYFDID-NYFGPLLQRIKPRPGGSIRIITTCQAKDRGVTEELKKPPFHAIVTRPLLYDSTNSQLDKASGLAAD----FLYLAHATRLIICESTFSWWAAILSNATEIHAP-------ASGMVPVAIDDPRFVFHD 501          
BLAST of mRNA_F-distichus_contig9634.19088.1 vs. uniprot
Match: A0A8J2WY98_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WY98_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.670e-6
Identity = 40/126 (31.75%), Postives = 64/126 (50.79%), Query Frame = 1
Query:   49 PGPNDMVIHYRNYKAELGEEQYEKLHFQDLDFNFYDTVLKSTQDRPETVWVVGEFH-KYNPLVKRLQEEHGNVKIA-----GMVTDQFRA---FCFLSRAPRFIMAQSTFSWWAAFLGNATEVHFP 399
            P  +D+V+H R     + + +Y          N++  VL   Q  P+ + +V   + + N +VK L E   N ++A     G  T        F +++RA R ++ +STFS+WAAFLG+A EVH P
Sbjct:  321 PDSDDVVVHVRLCDGPVHQYKYYSWK------NYFSHVLPRLQPPPKRIKIVTACNPRRNGVVKDLLENVPNAEVAKPRLRGSPTTAKSVAADFAYMARAKRLVVTESTFSFWAAFLGDAHEVHAP 440          
BLAST of mRNA_F-distichus_contig9634.19088.1 vs. uniprot
Match: A0A8J2T2Q7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2T2Q7_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.240e-5
Identity = 45/153 (29.41%), Postives = 70/153 (45.75%), Query Frame = 1
Query:   46 APGPNDMVIHYRNYKAELGEEQYEKLHFQDLDFNFYDTVLKSTQDRPETVWVVGEFHKYNPLVKRLQEEHGNVKIAGMVTDQFRA----------FCFLSRAPRFIMAQSTFSWWAAFLGNATEVHFPFQPTRKAVTGRHIVVDDDPRYIYRD 474
            +P   D++IH R  K +     + KL+  +   N++  V     +    V V        P V R   +H N   A +V+ + R           F +L+RA R ++ +ST+SWWAA++G ATEVH P         G   V  D+ RY++ D
Sbjct:   79 SPRKTDVIIHVRLCKTQ----NHYKLYTYE---NYFRHVFARLDNWRGRVKVCAACDAARPGVVRDLVKHLN---ATVVSPRIRGDGRGRSVEADFAYLARATRLVVTESTYSWWAAYVGQATEVHAPG-------VGTVPVPADERRYVFHD 214          
BLAST of mRNA_F-distichus_contig9634.19088.1 vs. uniprot
Match: A0A1Y5SZ05_9RHOB (Uncharacterized protein n=1 Tax=Pseudoruegeria aquimaris TaxID=393663 RepID=A0A1Y5SZ05_9RHOB)

HSP 1 Score: 52.8 bits (125), Expect = 4.920e-5
Identity = 45/142 (31.69%), Postives = 68/142 (47.89%), Query Frame = 1
Query:   52 GPNDMVIHYRNYKA-ELGEEQYEKLHFQDLDFNFYDTVLKSTQDRPETVWVVGEFHKYNPLVKRLQEEHGNVKIAGMVTDQFRAFCFLSRAPRFIMAQSTFSWWAAFLGNATEVHFP----FQPTRKAVTGRHIVVDDDPRY 462
            G +D+VIH R     E G  Q    H+  L   FY+ V++ +  RP  V  +G    Y+ +++    +   ++  G V   F     + RA   I A STFSW AA+L  AT +H+P    F P ++   G  ++   DPRY
Sbjct:  118 GDDDIVIHVRLEDILEPGRHQ----HYGPLPLGFYEQVIRDSGKRPVFVGQMGS-DWYSDMLRAAFPDALLLE-GGSVLHDFET---IRRAKHIIPAISTFSWMAAWLSEATSIHYPLSGLFHPLQRP--GIDMMPRKDPRY 248          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9634.19088.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G107_ECTSI3.040e-7164.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G104_ECTSI2.700e-6864.12Alpha-1,2-fucosyltransferase, putative n=2 Tax=Ect... [more]
F2TVY1_SALR52.800e-1933.53Uncharacterized protein n=1 Tax=Salpingoeca rosett... [more]
A0A349D2R7_9BACT1.130e-1030.26Uncharacterized protein n=1 Tax=Candidatus Peribac... [more]
F0YD20_AURAN2.320e-827.27Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A7S3JMN3_9STRA7.030e-831.88Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A8J2WY98_9STRA3.670e-631.75Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A8J2T2Q7_9STRA2.240e-529.41Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A1Y5SZ05_9RHOB4.920e-531.69Uncharacterized protein n=1 Tax=Pseudoruegeria aqu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9634contigF-distichus_contig9634:6511..7620 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score225.3
Seed ortholog evalue2.1e-56
Seed eggNOG ortholog2880.D7G107
Hectar predicted targeting categoryother localisation
EggNOG OGs2D12B@1,2SGFI@2759
Ec32 ortholog descriptionalpha-1,2-fucosyltransferase, putative
Ec32 orthologEc-22_001510.1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size507
Cds size507
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9634.19088.1prot_F-distichus_contig9634.19088.1Fucus distichus monoicouspolypeptideF-distichus_contig9634 6511..7620 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.7735689-CDS-F-distichus_contig9634:6510..66421622931140.7735689-CDS-F-distichus_contig9634:6510..6642Fucus distichus monoicousCDSF-distichus_contig9634 6511..6642 +
1690886175.5419033-CDS-F-distichus_contig9634:6510..66421690886175.5419033-CDS-F-distichus_contig9634:6510..6642Fucus distichus monoicousCDSF-distichus_contig9634 6511..6642 +
1622931140.7909384-CDS-F-distichus_contig9634:6936..70771622931140.7909384-CDS-F-distichus_contig9634:6936..7077Fucus distichus monoicousCDSF-distichus_contig9634 6937..7077 +
1690886175.5572982-CDS-F-distichus_contig9634:6936..70771690886175.5572982-CDS-F-distichus_contig9634:6936..7077Fucus distichus monoicousCDSF-distichus_contig9634 6937..7077 +
1622931140.812418-CDS-F-distichus_contig9634:7386..76201622931140.812418-CDS-F-distichus_contig9634:7386..7620Fucus distichus monoicousCDSF-distichus_contig9634 7387..7620 +
1690886175.5708046-CDS-F-distichus_contig9634:7386..76201690886175.5708046-CDS-F-distichus_contig9634:7386..7620Fucus distichus monoicousCDSF-distichus_contig9634 7387..7620 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9634.19088.1

>prot_F-distichus_contig9634.19088.1 ID=prot_F-distichus_contig9634.19088.1|Name=mRNA_F-distichus_contig9634.19088.1|organism=Fucus distichus monoicous|type=polypeptide|length=169bp
LPQILALDPSCCGPTAPGPNDMVIHYRNYKAELGEEQYEKLHFQDLDFNF
YDTVLKSTQDRPETVWVVGEFHKYNPLVKRLQEEHGNVKIAGMVTDQFRA
FCFLSRAPRFIMAQSTFSWWAAFLGNATEVHFPFQPTRKAVTGRHIVVDD
DPRYIYRDANGLVVHPQL*
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mRNA from alignment at F-distichus_contig9634:6511..7620+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9634.19088.1 ID=mRNA_F-distichus_contig9634.19088.1|Name=mRNA_F-distichus_contig9634.19088.1|organism=Fucus distichus monoicous|type=mRNA|length=1110bp|location=Sequence derived from alignment at F-distichus_contig9634:6511..7620+ (Fucus distichus monoicous)
CTGCCGCAGATACTGGCCTTAGATCCGTCCTGTTGCGGCCCCACCGCTCC GGGACCGAACGATATGGTTATACACTATCGCAACTACAAGGCGGAGTTGG GCGAGGAGCAGTACGAGAAGCTACACTTCCAGGTGCCCTTGACACGAATT ACAGTCTGTTCTTCTCAATTGCTTCGTAATTCCGAACAAAGAAATATTAC GTTTTTTTTTGCAGTTTTTTTGTGGGCCGGGTAGCAGCACAACTGGCACG AGTGTGAAAAAAAAAGGACGAGAATCGAAAAAATGGGTGCACGACGGCTC GAGGCGAGCGAAGTCGAATACGACGCGCTGTGGTCTGACTGGTTGAAGCG ATTGAAGTGCTCTGTACGACCGTGCGTTAGGCAAGTTGTTTGGAAACGCG TCAGCCGCCGCATTTTCGGTCTCCAGGACTTGGACTTCAATTTTTACGAC ACGGTCCTCAAAAGTACTCAAGACCGACCCGAAACCGTTTGGGTGGTGGG GGAGTTCCACAAGTACAATCCATTGGTGAAGCGCTTGCAAGAGGAGCACG GCAACGTAAAAATCGCTGTGAGTCGTGTTTTGTTTTCGTTCTGCTCAAAG TTATTGTAGACTTTCGAAAGCGGGGTTACTTTACTATCCGTCAGTGGCCG ATGCGTCACCGTTCCCTTCCCAAGCGAAGGTCAAACTGCCACTGAAAAGG CGGAACAACCATTCTCTTTTTATTTTCGTCAAACGGTGCAACGGTCCTTT CCGAGCATGCACGAACGAATCGCGTGCATAGAAATCAAGCCGATATGCTT GGTATACATTTTTGGCAAACGCAACCCTTCGGACTTTCTCCTCGTCGCCT CTCTGAACGAAACGCCGGCCTTGCAGGGGATGGTTACCGATCAGTTCCGC GCGTTCTGCTTCCTGAGTCGCGCTCCTCGCTTCATTATGGCTCAAAGCAC CTTCAGCTGGTGGGCAGCGTTCCTGGGCAACGCAACCGAGGTGCACTTTC CGTTCCAGCCGACGCGGAAGGCCGTCACCGGGCGACATATCGTTGTCGAC GATGATCCTCGTTATATTTACCGAGACGCCAATGGACTTGTGGTGCATCC TCAACTGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig9634:6511..7620+

>mRNA_F-distichus_contig9634.19088.1 ID=mRNA_F-distichus_contig9634.19088.1|Name=mRNA_F-distichus_contig9634.19088.1|organism=Fucus distichus monoicous|type=CDS|length=1014bp|location=Sequence derived from alignment at F-distichus_contig9634:6511..7620+ (Fucus distichus monoicous)
CTGCCGCAGATACTGGCCTTAGATCCGTCCTGTTGCGGCCCCACCGCTCC
GGGACCGAACGATATGGTTATACACTATCGCAACTACAAGGCGGAGTTGG
GCGAGGAGCAGTACGAGAAGCTACACTTCCAGCTGCCGCAGATACTGGCC
TTAGATCCGTCCTGTTGCGGCCCCACCGCTCCGGGACCGAACGATATGGT
TATACACTATCGCAACTACAAGGCGGAGTTGGGCGAGGAGCAGTACGAGA
AGCTACACTTCCAGGACTTGGACTTCAATTTTTACGACACGGTCCTCAAA
AGTACTCAAGACCGACCCGAAACCGTTTGGGTGGTGGGGGAGTTCCACAA
GTACAATCCATTGGTGAAGCGCTTGCAAGAGGAGCACGGCAACGTAAAAA
TCGCTGACTTGGACTTCAATTTTTACGACACGGTCCTCAAAAGTACTCAA
GACCGACCCGAAACCGTTTGGGTGGTGGGGGAGTTCCACAAGTACAATCC
ATTGGTGAAGCGCTTGCAAGAGGAGCACGGCAACGTAAAAATCGCTGGGA
TGGTTACCGATCAGTTCCGCGCGTTCTGCTTCCTGAGTCGCGCTCCTCGC
TTCATTATGGCTCAAAGCACCTTCAGCTGGTGGGCAGCGTTCCTGGGCAA
CGCAACCGAGGTGCACTTTCCGTTCCAGCCGACGCGGAAGGCCGTCACCG
GGCGACATATCGTTGTCGACGATGATCCTCGTTATATTTACCGAGACGCC
AATGGACTTGTGGTGCATCCTCAACTGTGAGGGATGGTTACCGATCAGTT
CCGCGCGTTCTGCTTCCTGAGTCGCGCTCCTCGCTTCATTATGGCTCAAA
GCACCTTCAGCTGGTGGGCAGCGTTCCTGGGCAACGCAACCGAGGTGCAC
TTTCCGTTCCAGCCGACGCGGAAGGCCGTCACCGGGCGACATATCGTTGT
CGACGATGATCCTCGTTATATTTACCGAGACGCCAATGGACTTGTGGTGC
ATCCTCAACTGTGA
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