mRNA_F-distichus_contig9633.19087.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9633.19087.1
Unique NamemRNA_F-distichus_contig9633.19087.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9633.19087.1 vs. uniprot
Match: D7FTS9_ECTSI (Endonuclease III homolog n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTS9_ECTSI)

HSP 1 Score: 215 bits (547), Expect = 6.410e-68
Identity = 96/117 (82.05%), Postives = 105/117 (89.74%), Query Frame = 1 
Query:   25 GLLDLPGVGPKMAYLVMDVAWGRIEGICVDTHVHRISNRLGWVDTWNRSKPRSQNPEKTRKHLQAWLPREHWSEVNGLLVGFGQQVCRAVRPSCSTCGIRDICPSSARGGDLSEPPN 375
            GLL+LPGVGPKM YLVMDVAWGR EGICVDTHVHRISNRLGWVDTWNR++P++QNPEKTRKHLQ WLPREHWSEVN LLVGFGQQVC A RPSCS CGI  +CPS+ R GDL+ PP+
Sbjct:  172 GLLELPGVGPKMTYLVMDVAWGRNEGICVDTHVHRISNRLGWVDTWNRNRPKAQNPEKTRKHLQGWLPREHWSEVNELLVGFGQQVCFATRPSCSACGISGLCPSADRHGDLALPPS 288
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BLAST of mRNA_F-distichus_contig9633.19087.1 vs. uniprot
Match: A0A7S2V6M2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6M2_9STRA)

HSP 1 Score: 171 bits (433), Expect = 7.420e-53
Identity = 73/105 (69.52%), Postives = 88/105 (83.81%), Query Frame = 1 
Query:   28 LLDLPGVGPKMAYLVMDVAWGRIEGICVDTHVHRISNRLGWVDTWNRSKPRSQNPEKTRKHLQAWLPREHWSEVNGLLVGFGQQVCRAVRPSCSTCGIRDICPSS 342
            LL LPGVGPKMA LVMD+AW +  GICVDTHVHR+SNRLGWV+TWN  KPRSQNPEKTRK L+ WLPR+ W ++N LLVG+GQ VC+A+ P+CS+C I+  CPS+
Sbjct:   11 LLALPGVGPKMAILVMDIAWDQTVGICVDTHVHRLSNRLGWVETWNHKKPRSQNPEKTRKALEKWLPRDSWGQINPLLVGYGQSVCKAINPACSSCCIQQQCPSA 115
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BLAST of mRNA_F-distichus_contig9633.19087.1 vs. uniprot
Match: A0A5D6Y8M4_9STRA (Endonuclease III homolog n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6Y8M4_9STRA)

HSP 1 Score: 169 bits (428), Expect = 1.570e-49
Identity = 73/108 (67.59%), Postives = 84/108 (77.78%), Query Frame = 1 
Query:   25 GLLDLPGVGPKMAYLVMDVAWGRIEGICVDTHVHRISNRLGWVDTWNRSKPRSQNPEKTRKHLQAWLPREHWSEVNGLLVGFGQQVCRAVRPSCSTCGIRDICPSSAR 348
            GLL LPGVGPKMAYLVMD AW  + GICVDTHVHRISNRLGWV TWN+  P++Q+PEKTR+ LQ WLPREHW  +N LLVGFGQ +C+   P C  C I  +CPS+ R
Sbjct:  214 GLLALPGVGPKMAYLVMDCAWSNVAGICVDTHVHRISNRLGWVTTWNKKNPKAQDPEKTRRELQDWLPREHWGPLNLLLVGFGQTICQPRAPKCDECSITHLCPSAHR 321
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BLAST of mRNA_F-distichus_contig9633.19087.1 vs. uniprot
Match: F0X2C6_9STRA (Endonuclease III homolog n=1 Tax=Albugo laibachii Nc14 TaxID=890382 RepID=F0X2C6_9STRA)

HSP 1 Score: 167 bits (424), Expect = 5.500e-49
Identity = 70/107 (65.42%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:   28 LLDLPGVGPKMAYLVMDVAWGRIEGICVDTHVHRISNRLGWVDTWNRSKPRSQNPEKTRKHLQAWLPREHWSEVNGLLVGFGQQVCRAVRPSCSTCGIRDICPSSAR 348
            L+ LPGVGPKMAYLVM+VAW +  GICVDTHVHRI NRLGWV TWN+  P++Q+PEKTRK L+AWLP EHW  +N LLVGFGQ +C A +P C  C ++ ICPS+++
Sbjct:  209 LVALPGVGPKMAYLVMNVAWNKPVGICVDTHVHRICNRLGWVSTWNKKNPKAQDPEKTRKELEAWLPSEHWDSINQLLVGFGQTICHARQPKCKDCALQSICPSASK 315
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BLAST of mRNA_F-distichus_contig9633.19087.1 vs. uniprot
Match: K3WGK0_GLOUD (ENDO3c domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGK0_GLOUD)

HSP 1 Score: 160 bits (405), Expect = 4.470e-48
Identity = 69/116 (59.48%), Postives = 90/116 (77.59%), Query Frame = 1 
Query:    1 ELNDNYSTGLLDLPGVGPKMAYLVMDVAWGRIEGICVDTHVHRISNRLGWVDTWNRSKPRSQNPEKTRKHLQAWLPREHWSEVNGLLVGFGQQVCRAVRPSCSTCGIRDICPSSAR 348
            ++ +NY   LL+LPGVGPK+A+LVM+ AW  + GICVDTHVHRISNRLGWVDTWN   P++Q P+KTR+ LQ WLP+EHW ++N LLVG GQ+VC +  P CS C +  +CPS+ +
Sbjct:   44 DIPNNYDD-LLELPGVGPKIAHLVMNCAWKNVVGICVDTHVHRISNRLGWVDTWNTKNPKAQGPQKTRQELQDWLPQEHWGQLNLLLVGLGQKVCFSRNPKCSECRLSHLCPSATK 158
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BLAST of mRNA_F-distichus_contig9633.19087.1 vs. uniprot
Match: H3G4Y0_PHYRM (Endonuclease III homolog n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3G4Y0_PHYRM)

HSP 1 Score: 163 bits (412), Expect = 4.910e-48
Identity = 73/114 (64.04%), Postives = 85/114 (74.56%), Query Frame = 1 
Query:    1 ELNDNYSTGLLDLPGVGPKMAYLVMDVAWGRIEGICVDTHVHRISNRLGWVDTWNRSKPRSQNPEKTRKHLQAWLPREHWSEVNGLLVGFGQQVCRAVRPSCSTCGIRDICPSS 342
            E+ D Y  GL+ LPGVGPKMA LVM+ AW    GICVDTHVHRISNRL WV TWN++ P+SQNPEKTR  L+ WLP+EHW  +N LLVGFGQ +C    P CS C IR +CPS+
Sbjct:  134 EIPDTYE-GLIGLPGVGPKMATLVMNCAWNNAVGICVDTHVHRISNRLKWVKTWNKNNPKSQNPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIRGVCPSA 246
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BLAST of mRNA_F-distichus_contig9633.19087.1 vs. uniprot
Match: K3WGH9_GLOUD (Endonuclease III homolog n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WGH9_GLOUD)

HSP 1 Score: 163 bits (413), Expect = 1.100e-47
Identity = 69/105 (65.71%), Postives = 83/105 (79.05%), Query Frame = 1 
Query:   28 LLDLPGVGPKMAYLVMDVAWGRIEGICVDTHVHRISNRLGWVDTWNRSKPRSQNPEKTRKHLQAWLPREHWSEVNGLLVGFGQQVCRAVRPSCSTCGIRDICPSS 342
            L+ LPGVGPKMAYLVMD AW  + GICVDTHVHRISNRLGWV+TWN+  P++Q+PEKTR  LQ WLP+EHW  +N LLVGFGQ +C+   P C+ C I  +CPS+
Sbjct:  179 LVALPGVGPKMAYLVMDCAWNNVVGICVDTHVHRISNRLGWVNTWNKKNPKAQDPEKTRAELQDWLPQEHWGPINVLLVGFGQTICQPRNPKCTECKISHLCPSA 283
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BLAST of mRNA_F-distichus_contig9633.19087.1 vs. uniprot
Match: A0A1V9YAA5_9STRA (Endonuclease III homolog n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YAA5_9STRA)

HSP 1 Score: 161 bits (407), Expect = 3.120e-46
Identity = 66/107 (61.68%), Postives = 86/107 (80.37%), Query Frame = 1 
Query:   28 LLDLPGVGPKMAYLVMDVAWGRIEGICVDTHVHRISNRLGWVDTWNRSKPRSQNPEKTRKHLQAWLPREHWSEVNGLLVGFGQQVCRAVRPSCSTCGIRDICPSSAR 348
            L+ LPGVGPKMA+L M  AW +  GICVD HVHRISNRLGWV TWN++ P+SQ+PEKTRK L+ WLP + W+ VN +LVGFGQ++C  + P C+ CG+RD+CPS+++
Sbjct:  229 LVALPGVGPKMAHLTMSAAWEKTVGICVDVHVHRISNRLGWVKTWNKANPKSQDPEKTRKELEDWLPYDLWNPVNAMLVGFGQEICLPMNPRCADCGVRDLCPSASK 335
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BLAST of mRNA_F-distichus_contig9633.19087.1 vs. uniprot
Match: A0A329RX62_9STRA (Endonuclease III homolog n=2 Tax=Phytophthora TaxID=4783 RepID=A0A329RX62_9STRA)

HSP 1 Score: 158 bits (399), Expect = 2.950e-45
Identity = 70/106 (66.04%), Postives = 81/106 (76.42%), Query Frame = 1 
Query:   25 GLLDLPGVGPKMAYLVMDVAWGRIEGICVDTHVHRISNRLGWVDTWNRSKPRSQNPEKTRKHLQAWLPREHWSEVNGLLVGFGQQVCRAVRPSCSTCGIRDICPSS 342
            GL+ LPGVGPKMA LVM+ AW    GICVDTHVHRISNRL WV TWN++ P+SQ+PEKTR  L+ WLP+EHW  +N LLVGFGQ +C    P CS C IR ICPS+
Sbjct:  207 GLIALPGVGPKMATLVMNCAWKNTVGICVDTHVHRISNRLKWVKTWNKNNPKSQDPEKTRAELEDWLPKEHWGPINPLLVGFGQTICLPRGPKCSECKIRGICPSA 312
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BLAST of mRNA_F-distichus_contig9633.19087.1 vs. uniprot
Match: A0A1W0A8A4_9STRA (Endonuclease III homolog n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A8A4_9STRA)

HSP 1 Score: 158 bits (399), Expect = 3.680e-45
Identity = 65/107 (60.75%), Postives = 83/107 (77.57%), Query Frame = 1 
Query:   28 LLDLPGVGPKMAYLVMDVAWGRIEGICVDTHVHRISNRLGWVDTWNRSKPRSQNPEKTRKHLQAWLPREHWSEVNGLLVGFGQQVCRAVRPSCSTCGIRDICPSSAR 348
            L+ LPGVGPKMA+L M  AW +  GICVD HVHRISNRLGWV TWN+  P+SQ+PEKTRK L+ WLP + W+ +N +LVGFGQ++C  V P CS C +R +CPS+++
Sbjct:  219 LIALPGVGPKMAHLTMSAAWEKTVGICVDVHVHRISNRLGWVKTWNKQNPKSQDPEKTRKELEDWLPYDRWNPINAMLVGFGQEICFPVNPRCSDCTVRHLCPSASK 325
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9633.19087.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FTS9_ECTSI6.410e-6882.05Endonuclease III homolog n=1 Tax=Ectocarpus silicu... [more]
A0A7S2V6M2_9STRA7.420e-5369.52Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A5D6Y8M4_9STRA1.570e-4967.59Endonuclease III homolog n=1 Tax=Pythium brassicum... [more]
F0X2C6_9STRA5.500e-4965.42Endonuclease III homolog n=1 Tax=Albugo laibachii ... [more]
K3WGK0_GLOUD4.470e-4859.48ENDO3c domain-containing protein n=1 Tax=Globispor... [more]
H3G4Y0_PHYRM4.910e-4864.04Endonuclease III homolog n=1 Tax=Phytophthora ramo... [more]
K3WGH9_GLOUD1.100e-4765.71Endonuclease III homolog n=1 Tax=Globisporangium u... [more]
A0A1V9YAA5_9STRA3.120e-4661.68Endonuclease III homolog n=1 Tax=Achlya hypogyna T... [more]
A0A329RX62_9STRA2.950e-4566.04Endonuclease III homolog n=2 Tax=Phytophthora TaxI... [more]
A0A1W0A8A4_9STRA3.680e-4560.75Endonuclease III homolog n=1 Tax=Thraustotheca cla... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9633contigF-distichus_contig9633:11..1202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score218.0
Seed ortholog evalue2.5e-54
Seed eggNOG ortholog2880.D7FTS9
Preferred nameNTH1
KEGG koko:K10773
KEGG Pathwayko03410,map03410
Hectar predicted targeting categoryother localisation
GOsGO:0000702,GO:0000703,GO:0003674,GO:0003824,GO:0003906,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005783,GO:0005911,GO:0006139,GO:0006259,GO:0006281,GO:0006284,GO:0006285,GO:0006289,GO:0006296,GO:0006464,GO:0006479,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0008168,GO:0008170,GO:0008213,GO:0008276,GO:0008757,GO:0009295,GO:0009506,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0012505,GO:0016278,GO:0016279,GO:0016740,GO:0016741,GO:0016787,GO:0016798,GO:0016799,GO:0018022,GO:0018193,GO:0018205,GO:0019104,GO:0019538,GO:0030054,GO:0032259,GO:0033554,GO:0033683,GO:0034641,GO:0036211,GO:0042644,GO:0042646,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055044,GO:0071704,GO:0090304,GO:0090305,GO:0140096,GO:0140097,GO:1901360,GO:1901564
EggNOG free text desc.oxidized pyrimidine nucleobase lesion DNA N-glycosylase activity
EggNOG OGsCOG0177@1,KOG1921@2759
EC4.2.99.18
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Exons3
Model size375
Cds size375
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9633.19087.1prot_F-distichus_contig9633.19087.1Fucus distichus monoicouspolypeptideF-distichus_contig9633 11..1202 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.6877637-CDS-F-distichus_contig9633:10..1381622931140.6877637-CDS-F-distichus_contig9633:10..138Fucus distichus monoicousCDSF-distichus_contig9633 11..138 +
1690886175.5029237-CDS-F-distichus_contig9633:10..1381690886175.5029237-CDS-F-distichus_contig9633:10..138Fucus distichus monoicousCDSF-distichus_contig9633 11..138 +
1622931140.704621-CDS-F-distichus_contig9633:576..6871622931140.704621-CDS-F-distichus_contig9633:576..687Fucus distichus monoicousCDSF-distichus_contig9633 577..687 +
1690886175.5189106-CDS-F-distichus_contig9633:576..6871690886175.5189106-CDS-F-distichus_contig9633:576..687Fucus distichus monoicousCDSF-distichus_contig9633 577..687 +
1622931140.72199-CDS-F-distichus_contig9633:1066..12021622931140.72199-CDS-F-distichus_contig9633:1066..1202Fucus distichus monoicousCDSF-distichus_contig9633 1067..1202 +
1690886175.5296245-CDS-F-distichus_contig9633:1066..12021690886175.5296245-CDS-F-distichus_contig9633:1066..1202Fucus distichus monoicousCDSF-distichus_contig9633 1067..1202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9633.19087.1

>prot_F-distichus_contig9633.19087.1 ID=prot_F-distichus_contig9633.19087.1|Name=mRNA_F-distichus_contig9633.19087.1|organism=Fucus distichus monoicous|type=polypeptide|length=125bp
ELNDNYSTGLLDLPGVGPKMAYLVMDVAWGRIEGICVDTHVHRISNRLGW
VDTWNRSKPRSQNPEKTRKHLQAWLPREHWSEVNGLLVGFGQQVCRAVRP
SCSTCGIRDICPSSARGGDLSEPPN
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mRNA from alignment at F-distichus_contig9633:11..1202+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9633.19087.1 ID=mRNA_F-distichus_contig9633.19087.1|Name=mRNA_F-distichus_contig9633.19087.1|organism=Fucus distichus monoicous|type=mRNA|length=1192bp|location=Sequence derived from alignment at F-distichus_contig9633:11..1202+ (Fucus distichus monoicous)
GAACTGAACGACAATTACTCGACAGGATTGCTTGACCTGCCAGGAGTTGG
ACCCAAAATGGCGTATCTCGTCATGGACGTCGCTTGGGGTCGGATCGAGG
GCATCTGCGTCGACACTCACGTACACAGGTTAGTGGTTGGCCTATGACGC
AGCAGCTGGTGTGATGAAAAAAATGTTTCCCGCGAGGCGCTGGGTGGTTT
GGATGTGGTTTGCACTTTAGAAGTCTGGAGTGATACGTTGTAGTGTACGA
GGTGCAGTATACGTTTTAGTGTTTACAACGGCGAGTTAGCTACAGCAACA
TTTTTGTCTTGCACGCCGTACGGCACCCAGCTCTCAACTTTCTTACAGAG
TTCGAACGCCGGGGCTTCCCTCGGTGATTGCGGCAGCCAACCCGACGCGC
TCGCTCGCGTTTGTTTCCCTTACAACGGCGCGCGGGACCCTCTCCACCCT
TCGTTTCTTCCCTGCATGCCATTTTCTTGTCTCTGCGTCGTGTGTCTACC
CTGGGATCGTCTCGCGTACCAAAAGCGCCGCTCCGGCTGTCGGCGCGTGA
CACACCTTTCCCCCAGAATCTCCAACCGCCTCGGCTGGGTGGACACGTGG
AACCGGAGCAAGCCCAGGTCGCAGAACCCCGAGAAGACTCGGAAACACCT
GCAGGCGTGGTTACCTCGCGAACACTGGTGAGGGCGCGCGCGCACGCCGC
GAGAGTCACGATCCTCTATACACGTGTCGTGGTTGAAGCCCCTTCTTCTC
ACGCTCCCTTGTGGTTGTCGAGATCAGTGCCCCCCCCGCCGCAAGAACTT
TCTGCTCCGGCGCAAGTCGTAATCACACGTGCACACACCGTCGTCGAGTC
TCCCCGGCCTACCGTCGCCGCTTCTTTTCTCCGGTGCGTGTGCTGCACTT
TACAGTCATGAAAAACTACTTAATAGCGAAGTACTCATTTTCGTCTTGAA
TACTGCTGATACTTATCTTCGTCTTAACTACTGGCAAGCACTTATTTTCG
CTAACCTCTCAACGACGCTCTTTTGTTCCACGTGTATGTACTTATCCTGC
TTTCAGGTCGGAGGTGAACGGGCTGTTGGTTGGGTTCGGACAGCAAGTTT
GTCGAGCGGTGCGGCCCTCGTGCTCGACGTGCGGCATAAGGGACATTTGC
CCGTCGTCGGCTAGGGGCGGCGATCTGTCGGAGCCTCCGAAT
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Coding sequence (CDS) from alignment at F-distichus_contig9633:11..1202+

>mRNA_F-distichus_contig9633.19087.1 ID=mRNA_F-distichus_contig9633.19087.1|Name=mRNA_F-distichus_contig9633.19087.1|organism=Fucus distichus monoicous|type=CDS|length=750bp|location=Sequence derived from alignment at F-distichus_contig9633:11..1202+ (Fucus distichus monoicous)
GAACTGAACGACAATTACTCGACAGGATTGCTTGACCTGCCAGGAGTTGG
ACCCAAAATGGCGTATCTCGTCATGGACGTCGCTTGGGGTCGGATCGAGG
GCATCTGCGTCGACACTCACGTACACAGGAACTGAACGACAATTACTCGA
CAGGATTGCTTGACCTGCCAGGAGTTGGACCCAAAATGGCGTATCTCGTC
ATGGACGTCGCTTGGGGTCGGATCGAGGGCATCTGCGTCGACACTCACGT
ACACAGAATCTCCAACCGCCTCGGCTGGGTGGACACGTGGAACCGGAGCA
AGCCCAGGTCGCAGAACCCCGAGAAGACTCGGAAACACCTGCAGGCGTGG
TTACCTCGCGAACACTGAATCTCCAACCGCCTCGGCTGGGTGGACACGTG
GAACCGGAGCAAGCCCAGGTCGCAGAACCCCGAGAAGACTCGGAAACACC
TGCAGGCGTGGTTACCTCGCGAACACTGGTCGGAGGTGAACGGGCTGTTG
GTTGGGTTCGGACAGCAAGTTTGTCGAGCGGTGCGGCCCTCGTGCTCGAC
GTGCGGCATAAGGGACATTTGCCCGTCGTCGGCTAGGGGCGGCGATCTGT
CGGAGCCTCCGAATGTCGGAGGTGAACGGGCTGTTGGTTGGGTTCGGACA
GCAAGTTTGTCGAGCGGTGCGGCCCTCGTGCTCGACGTGCGGCATAAGGG
ACATTTGCCCGTCGTCGGCTAGGGGCGGCGATCTGTCGGAGCCTCCGAAT
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