mRNA_F-distichus_contig96326.19086.1 (mRNA) Fucus distichus monoicous
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Overview
Homology
BLAST of mRNA_F-distichus_contig96326.19086.1 vs. uniprot
Match: D8LNL9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNL9_ECTSI) HSP 1 Score: 132 bits (332), Expect = 9.570e-29 Identity = 112/316 (35.44%), Postives = 145/316 (45.89%), Query Frame = 1
Query: 1 RCSLALYYAAKANKPRTIRDLVELGANVDQRKSGGMTNLHLTAARGADDATESLLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRTRWLSRVTANKLHAGPPRKKAKRSLPTPPEKRPDKGLALVPAPSERSRDRVPRSKTN------C----RRAKGVVGA--------------VLRLGRDSVLNENTPSDCMSIDGVLSDREARLTSRSVKELSGNARFLGAVERLLLLQEEGVFREVVTY 876
RCSLALYYAAKANK TIRDLV+LGA+V+ +SGG TNLH TA RGA AT +LLR GANL+ +N FSQ TV+LLLRWGA ET N+ N D+VG E++L+ ++A+ PA++ +R AG P K P +R K + P + N C RR KG GA LRLGR S+L+E P+ + ++ R F+ AVERLLLL+EEGVFR++ +
Sbjct: 324 RCSLALYYAAKANKTDTIRDLVDLGADVNTTRSGGNTNLHCTATRGAYAATHALLRTGANLEIRNNXXXXXXXXXXXFSQSDTVQLLLRWGADETATNYDNLTAHDLVG------------HSVEEELLSNEAL------GPANK---KRXXXXXXXXXXXXXXXXXXSKAGAPSSSGKGKGQAPHSQRGGKRAGGARTEGSAAAGLSPSCRKNFSKDKLCYLFGRREKGAAGAGAAPTVGPTVVQPPQLRLGRGSLLSEGGPAAAGKVGAPGAEERPR--------------FVVAVERLLLLREEGVFRDICRF 604
BLAST of mRNA_F-distichus_contig96326.19086.1 vs. uniprot
Match: A0A6H5K7S5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7S5_9PHAE) HSP 1 Score: 120 bits (301), Expect = 8.790e-25 Identity = 75/164 (45.73%), Postives = 91/164 (55.49%), Query Frame = 1
Query: 1 RCSLALYYAAKANKPRTIRDLVELGANVDQRKSGGMTNLHLTAARGADDATESLLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRTRWLSRV 492
RCSLALYYAAKANK TIRDLV+LGA+V+ +S G TNLH TA RGA AT++LL+ ET N+ N D+VG ++ E + E K + D AIR ML +APADR+WRRR WLVLCR RWL+RV
Sbjct: 326 RCSLALYYAAKANKTDTIRDLVDLGADVNTTRSAGNTNLHCTATRGAYAATQALLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXETATNYDNLTAHDLVG--HSVEEELLSNEALVSKELVDTAIRSMLVNAPADRVWRRRGWLVLCRARWLARV 487
BLAST of mRNA_F-distichus_contig96326.19086.1 vs. uniprot
Match: UPI001034D59B (ankyrin repeat domain-containing protein n=2 Tax=Hafniaceae TaxID=1903412 RepID=UPI001034D59B) HSP 1 Score: 68.2 bits (165), Expect = 5.170e-10 Identity = 35/81 (43.21%), Postives = 52/81 (64.20%), Query Frame = 1
Query: 79 NVDQRKSGGMTNLHLTAARGADDATESLLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDV 321
NVDQ+ T LH+ A G+ + E+L+ GAN+ AI ++G+TPLH+A F Q ++ +LL+ A T+RN NQ P+DV
Sbjct: 27 NVDQKSIDDDTMLHMAARAGSIEDIETLISGGANIDAIGDLGNTPLHQAAMFGQLKSIVILLKLKAKTTIRNEFNQIPADV 107
BLAST of mRNA_F-distichus_contig96326.19086.1 vs. uniprot
Match: D7FKL4_ECTSI (Ankyrin repeat protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKL4_ECTSI) HSP 1 Score: 72.0 bits (175), Expect = 9.100e-10 Identity = 61/183 (33.33%), Postives = 83/183 (45.36%), Query Frame = 1
Query: 52 IRDLVELGANVDQRKSGGMTNLHLTAARGADDATESLLRAGANLKAISNVGDTPLHRAC---SFSQPST-------------------------------------VRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRD-DAIRRMLESAPADRIWRRRSWLVLCRTR 477
IR L+E GA+VD GG+ LH A +A + LLRAGAN +++S G T LH A + ++ +T V LLLRWGA ET +D +G PEE D++ + + +R++L +APADR WRRR LVLCR R
Sbjct: 176 IRTLIEHGADVDATNYGGVAALHHATANNKVEAMDVLLRAGANARSMSESGHTVLHMAAITRTRTEAATLAVLLKHGADVNAQTVGGTSVLEYVATRAGKQGIVEVVDLLLRWGADETHVAGNGMRAADAIG--------MKVPEE--DRIPEEFEGVRKLLANAPADRAWRRRCSLVLCRAR 348
BLAST of mRNA_F-distichus_contig96326.19086.1 vs. uniprot
Match: D8LD22_ECTSI (MHC_I C-terminus family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LD22_ECTSI) HSP 1 Score: 72.4 bits (176), Expect = 1.240e-9 Identity = 59/165 (35.76%), Postives = 88/165 (53.33%), Query Frame = 1
Query: 13 ALYYAAKA-----NKPRTIRDLVELGANVDQRKSGGMTN---LHLTAARGADDAT---ESLLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRT 474
AL++AA +K +R L+ GA+V + + LH+ A G +T +LL GA++ TPLH AC++S + V LLLRWGA E + + G+ P+D++G + + + EA+ + I +ML APADR WRRRSWLVL R+
Sbjct: 280 ALHHAALIEVHGRDKGDAVRVLLAAGADVHAKTTDDHLRCAPLHI-AVCGRVPSTGTIRALLEGGADVNVRDIEDRTPLHEACTYSSVAAVELLLRWGADEKLTDDGDVTPADMIGTSG-DVGSDHGDIEADGQR-----IHQMLARAPADRSWRRRSWLVLSRS 437
BLAST of mRNA_F-distichus_contig96326.19086.1 vs. uniprot
Match: A0A6H5KNU3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNU3_9PHAE) HSP 1 Score: 71.6 bits (174), Expect = 1.840e-9 Identity = 57/161 (35.40%), Postives = 82/161 (50.93%), Query Frame = 1
Query: 13 ALYYAAKANKPRTIRDLVELGANVDQRKSGGMTNLHLTAARGADDATESLLRAGANLKAISNVGDTPL----HRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRTRWL 483
+L+ AA N+ I LVE GA+V+ T + +A +L + GAN++A G+TPL +A + V +LLR GA ET N + ++VVG + E A P +D + +R +LE+APADR WRRR LVLCR W+
Sbjct: 191 SLHVAALNNRVAAIDVLVEAGAHVEVEDDDDCTPFLDACSNHCHEAALALFKHGANIEARDMRGETPLIIAARQAGRQGVTAIVDMLLRCGADETALNPDGRTAAEVVGH---HIEYAACPLNKQDL----ERVRDLLENAPADRAWRRRGLLVLCRAFWI 344
BLAST of mRNA_F-distichus_contig96326.19086.1 vs. uniprot
Match: D8LBP9_ECTSI (Similar to ankyrin 2,3/unc44 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LBP9_ECTSI) HSP 1 Score: 65.5 bits (158), Expect = 1.770e-7 Identity = 54/159 (33.96%), Postives = 77/159 (48.43%), Query Frame = 1
Query: 13 ALYYAAKANKPRTIRDLVELGANVDQRKSGGMTNLHLTAARGAD-DATESLLRAGANLKAISNVGDTPLHRACSFSQP---STVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRTR 477
AL+ N+ + L++ GA++D++ G T L + GA A +LLR G + + T LH AC P + V LLLRWG E + G P+ ++ A ++ A E E V +L +APADR WRRRSWLV+ R R
Sbjct: 272 ALHAGCAMNQAGAMDVLLDAGADMDRKCYGASTPLCVAIEFGASVQAVHTLLRRGCQVSGP--MDKTMLHLACMTMAPGFDAIVDLLLRWGVSELTLDKGGNTPAALLSVAEGSSSRKA--REVERAHV-------LLANAPADRAWRRRSWLVMLRAR 419
BLAST of mRNA_F-distichus_contig96326.19086.1 vs. uniprot
Match: A0A6H5L7V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7V4_9PHAE) HSP 1 Score: 60.8 bits (146), Expect = 3.400e-7 Identity = 41/106 (38.68%), Postives = 55/106 (51.89%), Query Frame = 1
Query: 157 SLLRAGANLKAISNVGDTPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCRT 474
+LL+ GA++ + G T LH AC +P V LLLRWGA ETV + P A A+ E E+ + ++L AP DR WRRR +LV+CRT
Sbjct: 3 TLLQLGADVHVRDSTGATSLHMACYDVEPEAVDLLLRWGADETVVDDEGHTPYSYHFPAGADE-----AEWDEENRRTYKRLSKLLTHAPQDRSWRRRGFLVMCRT 103
BLAST of mRNA_F-distichus_contig96326.19086.1 vs. uniprot
Match: D7G692_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G692_ECTSI) HSP 1 Score: 64.7 bits (156), Expect = 3.480e-7 Identity = 37/91 (40.66%), Postives = 51/91 (56.04%), Query Frame = 1
Query: 208 TPLHRACSFSQPSTVRLLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDA--IRRMLESAPADRIWRRRSWLVLCRT 474
TPLH AC S + V LLLRWGA +T+ + + +D VG + + +D ++ D R +L AP DR+WRRR WLVLCR+
Sbjct: 406 TPLHYACYKSNAAAVDLLLRWGADDTIVDGEGETAADEVGTWDPEVHSNEDDGSIDDDKLKADGQRTRLILACAPVDRLWRRRGWLVLCRS 496
BLAST of mRNA_F-distichus_contig96326.19086.1 vs. uniprot
Match: A0A6H5JT17_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT17_9PHAE) HSP 1 Score: 63.5 bits (153), Expect = 5.470e-7 Identity = 53/164 (32.32%), Postives = 79/164 (48.17%), Query Frame = 1
Query: 16 LYYAAKANKPRTIRDLVELGAN--------VDQRKSGGMTNLHLTAARGADDATESLLRAGANLKAISNVGDTPLHRACSFS-QPSTVR---LLLRWGAVETVRNFGNQAPSDVVGAANANTEATAAPEEAEDKLVRDDAIRRMLESAPADRIWRRRSWLVLCR 471
LY+A + + P R L++ GA + S G+T LH+ A + +LLR+GAN+ A ++ G TPLH C S P +V+ LLL W A ET + + P +V ++ +R+ L +APADR+WR R LV+CR
Sbjct: 202 LYFALRRS-PAMTRALLQHGAASFEPYHGVCGKHSSVGLTPLHVAAYYHRSLSMAALLRSGANVDAEADNGLTPLHMVCKTSLAPGSVKANDLLLSWDADETTTDHDGRTPKALVSGRSSLRW----------------RVRQKLANAPADRLWRSRGMLVMCR 348 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96326.19086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 11
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig96326.19086.1 >prot_F-distichus_contig96326.19086.1 ID=prot_F-distichus_contig96326.19086.1|Name=mRNA_F-distichus_contig96326.19086.1|organism=Fucus distichus monoicous|type=polypeptide|length=259bp MTNLHLTAARGADDATESLLRAGANLKAISNVGDTPLHRACSFSQPSTVRback to top mRNA from alignment at F-distichus_contig96326:3..2207- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig96326.19086.1 ID=mRNA_F-distichus_contig96326.19086.1|Name=mRNA_F-distichus_contig96326.19086.1|organism=Fucus distichus monoicous|type=mRNA|length=2205bp|location=Sequence derived from alignment at F-distichus_contig96326:3..2207- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig96326:3..2207- >mRNA_F-distichus_contig96326.19086.1 ID=mRNA_F-distichus_contig96326.19086.1|Name=mRNA_F-distichus_contig96326.19086.1|organism=Fucus distichus monoicous|type=CDS|length=1554bp|location=Sequence derived from alignment at F-distichus_contig96326:3..2207- (Fucus distichus monoicous)back to top |