mRNA_F-distichus_contig96322.19085.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96322.19085.1
Unique NamemRNA_F-distichus_contig96322.19085.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig96322.19085.1 vs. uniprot
Match: A0A6H5K492_9PHAE (CRM1_C domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K492_9PHAE)

HSP 1 Score: 90.5 bits (223), Expect = 8.790e-20
Identity = 45/57 (78.95%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    4 SNQGREVGVTDVVFFGLKKVMPLMTEGLLQFPSLASQYFSLVGFLVQTYAHKLAALE 174
            S + R+V VTDVVFFGLKKVMPLMTEGLLQFP LA+QYFSLVGF+VQT++ KLA LE
Sbjct:  344 SEKDRDVKVTDVVFFGLKKVMPLMTEGLLQFPELATQYFSLVGFMVQTFSDKLAGLE 400
[Close]
BLAST of mRNA_F-distichus_contig96322.19085.1 vs. uniprot
Match: D7FX53_ECTSI (CRM1_C domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FX53_ECTSI)

HSP 1 Score: 89.4 bits (220), Expect = 9.170e-20
Identity = 44/57 (77.19%), Postives = 51/57 (89.47%), Query Frame = 1 
Query:    4 SNQGREVGVTDVVFFGLKKVMPLMTEGLLQFPSLASQYFSLVGFLVQTYAHKLAALE 174
            S + R+V VTDVVFFGLKKVMPLMTEGLLQFP LA+QYFSLVGF+VQT++ KL+ LE
Sbjct:  128 SEKDRDVKVTDVVFFGLKKVMPLMTEGLLQFPELATQYFSLVGFMVQTFSDKLSGLE 184
[Close]
BLAST of mRNA_F-distichus_contig96322.19085.1 vs. uniprot
Match: K0R4W3_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R4W3_THAOC)

HSP 1 Score: 78.6 bits (192), Expect = 1.430e-15
Identity = 37/60 (61.67%), Postives = 50/60 (83.33%), Query Frame = 1 
Query:    4 SNQGREVG-VTDVVFFGLKKVMPLMTEGLLQFPSLASQYFSLVGFLVQTYAHKLAALEFE 180
            S+QG + G +TDV+FFGL++++PLMT+GLLQFP+L   YF+LVGF+V+TY  KL AL FE
Sbjct: 1053 SSQGIKTGQITDVIFFGLQQIIPLMTQGLLQFPTLCQHYFTLVGFMVETYPEKLCALPFE 1112
[Close]
BLAST of mRNA_F-distichus_contig96322.19085.1 vs. uniprot
Match: B8BYG7_THAPS (CRM1_C domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYG7_THAPS)

HSP 1 Score: 77.8 bits (190), Expect = 2.670e-15
Identity = 37/59 (62.71%), Postives = 47/59 (79.66%), Query Frame = 1 
Query:    1 LSNQGREVGVTDVVFFGLKKVMPLMTEGLLQFPSLASQYFSLVGFLVQTYAHKLAALEF 177
            LSN      +TDV+FFGL+++MP+MT+GLLQFPSL + YFSLVGF+V+TY  KL AL F
Sbjct: 1453 LSNGVESDQITDVIFFGLQQLMPMMTQGLLQFPSLCTHYFSLVGFMVETYPEKLCALPF 1511
[Close]
BLAST of mRNA_F-distichus_contig96322.19085.1 vs. uniprot
Match: A0A7S4QUS0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S4QUS0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 3.350e-14
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   28 VTDVVFFGLKKVMPLMTEGLLQFPSLASQYFSLVGFLVQTYAHKLAALEFE 180
            VTDV+FFGL++++PLMT GLLQFP+L +QYFSLVGF++ TY  K+  L F+
Sbjct:  152 VTDVIFFGLQQILPLMTSGLLQFPTLCTQYFSLVGFMMDTYPEKVCTLPFD 202
[Close]
BLAST of mRNA_F-distichus_contig96322.19085.1 vs. uniprot
Match: A0A7S1VM31_9STRA (Hypothetical protein n=1 Tax=Grammatophora oceanica TaxID=210454 RepID=A0A7S1VM31_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 7.330e-14
Identity = 30/51 (58.82%), Postives = 45/51 (88.24%), Query Frame = 1 
Query:   28 VTDVVFFGLKKVMPLMTEGLLQFPSLASQYFSLVGFLVQTYAHKLAALEFE 180
            VTD++FFGL++++PLMT+GLLQFP+L SQYF+LVGF++ TY  K+  L+++
Sbjct:   76 VTDIIFFGLQQIIPLMTQGLLQFPNLCSQYFNLVGFMMDTYPDKVCVLQYD 126
[Close]
BLAST of mRNA_F-distichus_contig96322.19085.1 vs. uniprot
Match: A0A6U3RHZ0_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3RHZ0_9STRA)

HSP 1 Score: 73.2 bits (178), Expect = 1.130e-13
Identity = 32/51 (62.75%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   28 VTDVVFFGLKKVMPLMTEGLLQFPSLASQYFSLVGFLVQTYAHKLAALEFE 180
            VTDV+FFGL++++PLMT GLLQFP+L +QYFSLVGF++ TY  K+  L F+
Sbjct: 1105 VTDVIFFGLQQILPLMTSGLLQFPTLCTQYFSLVGFMMDTYPEKVCTLPFD 1155
[Close]
BLAST of mRNA_F-distichus_contig96322.19085.1 vs. uniprot
Match: A0A7S0FRC0_9STRA (Hypothetical protein n=1 Tax=Minutocellus polymorphus TaxID=265543 RepID=A0A7S0FRC0_9STRA)

HSP 1 Score: 72.0 bits (175), Expect = 1.750e-13
Identity = 31/51 (60.78%), Postives = 44/51 (86.27%), Query Frame = 1 
Query:   28 VTDVVFFGLKKVMPLMTEGLLQFPSLASQYFSLVGFLVQTYAHKLAALEFE 180
            VTD++FFGL++++PLMT+GLLQFP+L S YFSLV F+++TY  K+ AL F+
Sbjct:  100 VTDMIFFGLQQILPLMTQGLLQFPALCSSYFSLVSFMMETYPEKVCALPFD 150
[Close]
BLAST of mRNA_F-distichus_contig96322.19085.1 vs. uniprot
Match: A0A7S2EHT5_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S2EHT5_TRICV)

HSP 1 Score: 71.2 bits (173), Expect = 4.750e-13
Identity = 31/51 (60.78%), Postives = 43/51 (84.31%), Query Frame = 1 
Query:   28 VTDVVFFGLKKVMPLMTEGLLQFPSLASQYFSLVGFLVQTYAHKLAALEFE 180
            VTDV+FFGL++++PLMT+GLLQFP+L  QYFSLVGF++ TY  K+  L ++
Sbjct:  177 VTDVIFFGLQQILPLMTQGLLQFPTLCVQYFSLVGFMMDTYPEKVCELPYD 227
[Close]
BLAST of mRNA_F-distichus_contig96322.19085.1 vs. uniprot
Match: A0A7S3PXS9_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PXS9_9STRA)

HSP 1 Score: 66.6 bits (161), Expect = 2.280e-11
Identity = 29/51 (56.86%), Postives = 41/51 (80.39%), Query Frame = 1 
Query:   28 VTDVVFFGLKKVMPLMTEGLLQFPSLASQYFSLVGFLVQTYAHKLAALEFE 180
            V +VVF+GL++++PLMT+GLL FP L  QY+SLVGF++ TY  K+ AL F+
Sbjct: 1052 VIEVVFYGLQQILPLMTQGLLHFPRLCKQYYSLVGFMMDTYPEKVGALPFD 1102
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96322.19085.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K492_9PHAE8.790e-2078.95CRM1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
D7FX53_ECTSI9.170e-2077.19CRM1_C domain-containing protein n=1 Tax=Ectocarpu... [more]
K0R4W3_THAOC1.430e-1561.67Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
B8BYG7_THAPS2.670e-1562.71CRM1_C domain-containing protein n=1 Tax=Thalassio... [more]
A0A7S4QUS0_9STRA3.350e-1462.75Hypothetical protein (Fragment) n=1 Tax=Ditylum br... [more]
A0A7S1VM31_9STRA7.330e-1458.82Hypothetical protein n=1 Tax=Grammatophora oceanic... [more]
A0A6U3RHZ0_9STRA1.130e-1362.75Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
A0A7S0FRC0_9STRA1.750e-1360.78Hypothetical protein n=1 Tax=Minutocellus polymorp... [more]
A0A7S2EHT5_TRICV4.750e-1360.78Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]
A0A7S3PXS9_9STRA2.280e-1156.86Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96322contigF-distichus_contig96322:118..1245 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score89.4
Seed ortholog evalue6.4e-16
Seed eggNOG ortholog2880.D7FX53
Preferred nameXPO4
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005049,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005643,GO:0005654,GO:0005737,GO:0005829,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008536,GO:0012505,GO:0015031,GO:0015833,GO:0017016,GO:0019899,GO:0031267,GO:0031967,GO:0031974,GO:0031975,GO:0031981,GO:0032386,GO:0032388,GO:0032879,GO:0032880,GO:0032991,GO:0033036,GO:0033157,GO:0034613,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046822,GO:0046824,GO:0046825,GO:0046827,GO:0046907,GO:0048518,GO:0050789,GO:0051020,GO:0051049,GO:0051050,GO:0051168,GO:0051169,GO:0051179,GO:0051222,GO:0051223,GO:0051234,GO:0051641,GO:0051649,GO:0060341,GO:0065007,GO:0070013,GO:0070201,GO:0070727,GO:0071702,GO:0071705,GO:0090087,GO:0090316,GO:0140104,GO:0140142,GO:1903827,GO:1903829,GO:1904951
EggNOG free text desc.nuclear export signal receptor activity
EggNOG OGsKOG4541@1,KOG4541@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size180
Cds size180
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.5229065-CDS-F-distichus_contig96322:117..2431622931140.5229065-CDS-F-distichus_contig96322:117..243Fucus distichus monoicousCDSF-distichus_contig96322 118..243 +
1690886175.4321723-CDS-F-distichus_contig96322:117..2431690886175.4321723-CDS-F-distichus_contig96322:117..243Fucus distichus monoicousCDSF-distichus_contig96322 118..243 +
1622931140.5429614-CDS-F-distichus_contig96322:1191..12451622931140.5429614-CDS-F-distichus_contig96322:1191..1245Fucus distichus monoicousCDSF-distichus_contig96322 1192..1245 +
1690886175.4442961-CDS-F-distichus_contig96322:1191..12451690886175.4442961-CDS-F-distichus_contig96322:1191..1245Fucus distichus monoicousCDSF-distichus_contig96322 1192..1245 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96322.19085.1prot_F-distichus_contig96322.19085.1Fucus distichus monoicouspolypeptideF-distichus_contig96322 118..1245 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96322.19085.1

>prot_F-distichus_contig96322.19085.1 ID=prot_F-distichus_contig96322.19085.1|Name=mRNA_F-distichus_contig96322.19085.1|organism=Fucus distichus monoicous|type=polypeptide|length=60bp
LSNQGREVGVTDVVFFGLKKVMPLMTEGLLQFPSLASQYFSLVGFLVQTY
AHKLAALEFE
back to top

mRNA from alignment at F-distichus_contig96322:118..1245+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96322.19085.1 ID=mRNA_F-distichus_contig96322.19085.1|Name=mRNA_F-distichus_contig96322.19085.1|organism=Fucus distichus monoicous|type=mRNA|length=1128bp|location=Sequence derived from alignment at F-distichus_contig96322:118..1245+ (Fucus distichus monoicous)
CTCTCAAACCAGGGCCGGGAAGTGGGGGTGACGGACGTGGTGTTCTTCGG
CCTGAAGAAGGTCATGCCCCTCATGACGGAGGGACTGCTCCAGTTCCCGT
CGCTGGCTTCCCAGTACTTCTCCCTGGTGAGGGCGAGAGAACAAGAGAAG
AGAAGAGAACCGTTCCCATTGCTTGTCCTCCGAGCTCAAGAGGAGGGATA
GGATACATGACATGATATGTTTTGGAGAGATATAGAAAAGAACGACACGT
GTTGCGCGCCAAAGGAAACAATGAAAGAAAGTTACATGAATCATGACAAT
ATAATAGTTACGTTGAATACCTATATACAGTAGTGTTTAGTGATAGTAGG
TGTGTGTGCCCCCCCCCCCCGTCGTTTCCCCCCGGTTGAGGTTGAGGTTG
AGCTACGAGTCCAAGAAGCCACCGCAACAAGGCTCCTCTTTGTTTTGTTT
AGTTTTATTTTATTTTATTTTATTTCTGCTCTTGGACTAATGACAATAAC
ATTACAATACATCAATAGCCCCCCCCGCCTTCATCGACTCATAATAATGG
TAACATCAATAGCTAGAGCATTTATCGGAGCTGGTTTGAGTACATTAGAT
GGGTATATTAGATTATATGTCTATGTCCACGTCTTCCTCGTGCCTCTTTC
TCTTCACGGTGTGACTAGTCGCCTCACATGCCTTATATTCCGTGTCTTGG
TTTCTTTTACCAGACCACAAGGTCGAGTATATTTGGGGACCGCTGTCGTT
GAATGCATGCGGCATTGTATGGAATGGTATGGTGCGGCATGGTATGGTGC
GGCATTGTATGGAATGGTATGATATGGAGCCAACATCGGCTTAAAGTGAC
AAAACAACAACCACAACAACAGCGTTCAACGCTCTCTCGAACTCTCATTT
ACACGTTCCTTCACATATACGTACACATACATACACAAGCTGCTGTCTCT
ATCGCGATCACAGGTCGATCAGAGGTGTTTGGTGTCTCGCGCCGTGCCAA
AGAAAGTGTAACCGGATTTCTGGGGCCTAAAACATTCGCCGTCTTTTTTT
GTTTGTTCTTTTCTCATTCTCCAGGTGGGATTCCTGGTGCAGACGTACGC
CCACAAGCTGGCGGCTCTGGAGTTCGAA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig96322:118..1245+

>mRNA_F-distichus_contig96322.19085.1 ID=mRNA_F-distichus_contig96322.19085.1|Name=mRNA_F-distichus_contig96322.19085.1|organism=Fucus distichus monoicous|type=CDS|length=360bp|location=Sequence derived from alignment at F-distichus_contig96322:118..1245+ (Fucus distichus monoicous)
CTCTCAAACCAGGGCCGGGAAGTGGGGGTGACGGACGTGGTGTTCTTCGG
CCTGAAGAAGGTCATGCCCCTCATGACGGAGGGACTGCTCCAGTTCCCGT
CGCTGGCTTCCCAGTACTTCTCCCTGCTCTCAAACCAGGGCCGGGAAGTG
GGGGTGACGGACGTGGTGTTCTTCGGCCTGAAGAAGGTCATGCCCCTCAT
GACGGAGGGACTGCTCCAGTTCCCGTCGCTGGCTTCCCAGTACTTCTCCC
TGGTGGGATTCCTGGTGCAGACGTACGCCCACAAGCTGGCGGCTCTGGAG
TTCGAAGTGGGATTCCTGGTGCAGACGTACGCCCACAAGCTGGCGGCTCT
GGAGTTCGAA
back to top