mRNA_F-distichus_contig96306.19083.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96306.19083.1
Unique NamemRNA_F-distichus_contig96306.19083.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig96306.19083.1 vs. uniprot
Match: A0A6H5L020_9PHAE (Reverse transcriptase domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L020_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 9.030e-13
Identity = 39/93 (41.94%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 IETTVRTRRLLWVGALLRMDDHRLPKRVMSGEVENA-GKRGPGGKEKEWTDCVADDVRLFGITRD-----WSTAALDPGEWYSTVREGGCRFM 261
            IE TVR RRL +VG ++RM+D RLPKR++SG +    G R  GG+E +W   + +D+  F I  +     W  +A DP  WY+ V +G   FM
Sbjct:  672 IEATVRKRRLCFVGFVVRMEDSRLPKRMLSGAMAGGVGYR--GGQESDWVSRLGEDLVAFNIGDEKGAGKWKESAKDPEVWYNNVEDGAAWFM 762
[Close]
BLAST of mRNA_F-distichus_contig96306.19083.1 vs. uniprot
Match: A0A6H5L9D6_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9D6_9PHAE)

HSP 1 Score: 72.0 bits (175), Expect = 9.070e-13
Identity = 39/93 (41.94%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:    1 IETTVRTRRLLWVGALLRMDDHRLPKRVMSGEVENAGKRG-PGGKEKEWTDCVADDVRLFGITRD-----WSTAALDPGEWYSTVREGGCRFM 261
            IE TVR RRL + G ++RM+D+RLPKR++ G +  AG  G  GG+E +W   + +D+  FG+  +     W  +A DP  WYS V +G   FM
Sbjct:  634 IEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAM--AGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEAGKWKDSAKDPKVWYSKVEDGAAWFM 724
[Close]
BLAST of mRNA_F-distichus_contig96306.19083.1 vs. uniprot
Match: A0A6H5JCQ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCQ1_9PHAE)

HSP 1 Score: 70.5 bits (171), Expect = 1.480e-12
Identity = 34/87 (39.08%), Postives = 52/87 (59.77%), Query Frame = 1 
Query:    1 IETTVRTRRLLWVGALLRMDDHRLPKRVMSGEVENAGKRGPGGKEKEWTDCVADDVRLFGITRD-----WSTAALDPGEWYSTVREG 246
            IE TVR RRL + G ++RM+D+RLPKR++ G +   G    GG+E +W  C+ +D+  F +  +     W  +A DP  WY+ V +G
Sbjct:  142 IEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAM-GGGVGSRGGQESDWVSCLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDG 227
[Close]
BLAST of mRNA_F-distichus_contig96306.19083.1 vs. uniprot
Match: A0A6H5K0C0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0C0_9PHAE)

HSP 1 Score: 70.9 bits (172), Expect = 1.650e-12
Identity = 37/93 (39.78%), Postives = 55/93 (59.14%), Query Frame = 1 
Query:    1 IETTVRTRRLLWVGALLRMDDHRLPKRVMSGEVENA-GKRGPGGKEKEWTDCVADDVRLFGITRD-----WSTAALDPGEWYSTVREGGCRFM 261
            IE TVR RRL + G ++RM+D RLPKR++ G +    G R  GG+E +W   + +D+  F +  +     W  +A DP  WY+ V++G  RFM
Sbjct:  228 IEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYR--GGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVKDGAARFM 318
[Close]
BLAST of mRNA_F-distichus_contig96306.19083.1 vs. uniprot
Match: A0A6H5JX67_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX67_9PHAE)

HSP 1 Score: 66.2 bits (160), Expect = 1.340e-11
Identity = 36/93 (38.71%), Postives = 53/93 (56.99%), Query Frame = 1 
Query:    1 IETTVRTRRLLWVGALLRMDDHRLPKRVMSGEVENA-GKRGPGGKEKEWTDCVADDVRLFGITRD-----WSTAALDPGEWYSTVREGGCRFM 261
            IE TVR RRL + G + RM+D+RLPKR++ G +    G R  GG+E++W   + + +  F +  D     W  +A DP  WY+ V +G   FM
Sbjct:   53 IEATVRKRRLCFAGFVTRMEDNRLPKRMLLGAMAGGVGYR--GGQERDWVSRLGEGLVAFNMGDDKEGGKWKESAKDPEVWYNKVEDGAAWFM 143
[Close]
BLAST of mRNA_F-distichus_contig96306.19083.1 vs. uniprot
Match: A0A6H5JGX2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGX2_9PHAE)

HSP 1 Score: 68.2 bits (165), Expect = 2.050e-11
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 IETTVRTRRLLWVGALLRMDDHRLPKRVMSGEVENA-GKRGPGGKEKEWTDCVADDVRLFGITRD-----WSTAALDPGEWYSTVREGGCRFM 261
            IE TVR RRL + G ++RM+D RLPKR++ G +    G R  GG+E +W   + +D+  F ++ +     W  +A DP  WY+ V +G   FM
Sbjct:  698 IEATVRKRRLCFAGFVMRMEDSRLPKRMLLGAMAGGVGYR--GGQESDWVSRLGEDLVAFNMSDEKEGGKWKESAKDPEVWYNKVEDGAAWFM 788
[Close]
BLAST of mRNA_F-distichus_contig96306.19083.1 vs. uniprot
Match: A0A6H5KG97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG97_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.460e-11
Identity = 37/93 (39.78%), Postives = 52/93 (55.91%), Query Frame = 1 
Query:    1 IETTVRTRRLLWVGALLRMDDHRLPKRVMSGEVEN-AGKRGPGGKEKEWTDCVADDVRLFGITRD-----WSTAALDPGEWYSTVREGGCRFM 261
            IE T R RRL +VG ++RM+D RLPKR++SG +   AG R  GG+E +W   + +D+  F +  +     W  +  DP  WYS V  G    M
Sbjct:  201 IEATARKRRLCFVGFVMRMEDSRLPKRMLSGAMAGGAGYR--GGQESDWVSRLGEDLVAFNMGAEKEGGKWKESVKDPEVWYSKVENGAAWLM 291
[Close]
BLAST of mRNA_F-distichus_contig96306.19083.1 vs. uniprot
Match: A0A6H5JAB2_9PHAE (Reverse transcriptase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB2_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.500e-11
Identity = 35/92 (38.04%), Postives = 53/92 (57.61%), Query Frame = 1 
Query:    1 IETTVRTRRLLWVGALLRMDDHRLPKRVMSGEVENAGKRGPGGKEKEWTDCVADDVRLFGITRD-----WSTAALDPGEWYSTVREGGCRFM 261
            IE TVR RRL + G ++RM+D+RLPKR++ G +   G R  GG+E +W   + +D+  F +  +     W  +A  P  WY+ V +G   FM
Sbjct:  230 IEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAG-GVRYRGGQESDWVSHLGEDLVTFNMGDEKEGGKWKESAKGPEVWYNKVEDGAAWFM 320
[Close]
BLAST of mRNA_F-distichus_contig96306.19083.1 vs. uniprot
Match: A0A6H5JHY4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHY4_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 2.750e-11
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 IETTVRTRRLLWVGALLRMDDHRLPKRVMSGEVENA-GKRGPGGKEKEWTDCVADDVRLFGITRD-----WSTAALDPGEWYSTVREGGCRFM 261
            IE TVR RRL + G ++RM+D+RLPKR++ G +    G R  GG+E +W   + +D+  F +  +     W  +A DP  WY+ V +G   FM
Sbjct:  336 IEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAMAGGVGYR--GGQESDWVSRLGEDLVAFNMGDEKEGGKWKESAKDPEVWYNKVEDGAAWFM 426
[Close]
BLAST of mRNA_F-distichus_contig96306.19083.1 vs. uniprot
Match: A0A6H5KSH7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSH7_9PHAE)

HSP 1 Score: 67.4 bits (163), Expect = 2.830e-11
Identity = 36/93 (38.71%), Postives = 54/93 (58.06%), Query Frame = 1 
Query:    1 IETTVRTRRLLWVGALLRMDDHRLPKRVMSGEVENAGKRG-PGGKEKEWTDCVADDVRLFGITRD-----WSTAALDPGEWYSTVREGGCRFM 261
            IE TVR RRL + G ++RM+D+RLPKR++ G +  AG  G  GG+E +W   + +D+  FG+  +     W  +A D   WY  + +G   FM
Sbjct:  165 IEATVRKRRLCFAGFVMRMEDNRLPKRMLLGAM--AGGTGYRGGQESDWVYRLGEDLVAFGMKEEKEGGRWKESAKDQEAWYDKIEDGAAWFM 255
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96306.19083.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L020_9PHAE9.030e-1341.94Reverse transcriptase domain-containing protein (F... [more]
A0A6H5L9D6_9PHAE9.070e-1341.94Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JCQ1_9PHAE1.480e-1239.08Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K0C0_9PHAE1.650e-1239.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JX67_9PHAE1.340e-1138.71Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5JGX2_9PHAE2.050e-1138.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KG97_9PHAE2.460e-1139.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JAB2_9PHAE2.500e-1138.04Reverse transcriptase domain-containing protein n=... [more]
A0A6H5JHY4_9PHAE2.750e-1138.71Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KSH7_9PHAE2.830e-1138.71Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96306contigF-distichus_contig96306:1875..2138 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeMetazoa
Seed ortholog score65.9
Seed ortholog evalue1.1e-08
Seed eggNOG ortholog28377.ENSACAP00000022069
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ribonuclease H protein
EggNOG OGs3A35Z@33154,3BQYF@33208,3D7GC@33213,48EZY@7711,49BMJ@7742,KOG1075@1,KOG1075@2759
COG Functional cat.S
Best tax levelVertebrata
Best eggNOG OGNA|NA|NA
Exons1
Model size264
Cds size264
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931140.274522-CDS-F-distichus_contig96306:1874..21381622931140.274522-CDS-F-distichus_contig96306:1874..2138Fucus distichus monoicousCDSF-distichus_contig96306 1875..2138 -
1690886175.308401-CDS-F-distichus_contig96306:1874..21381690886175.308401-CDS-F-distichus_contig96306:1874..2138Fucus distichus monoicousCDSF-distichus_contig96306 1875..2138 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96306.19083.1prot_F-distichus_contig96306.19083.1Fucus distichus monoicouspolypeptideF-distichus_contig96306 1875..2138 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96306.19083.1

>prot_F-distichus_contig96306.19083.1 ID=prot_F-distichus_contig96306.19083.1|Name=mRNA_F-distichus_contig96306.19083.1|organism=Fucus distichus monoicous|type=polypeptide|length=88bp
IETTVRTRRLLWVGALLRMDDHRLPKRVMSGEVENAGKRGPGGKEKEWTD
CVADDVRLFGITRDWSTAALDPGEWYSTVREGGCRFMA
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mRNA from alignment at F-distichus_contig96306:1875..2138-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96306.19083.1 ID=mRNA_F-distichus_contig96306.19083.1|Name=mRNA_F-distichus_contig96306.19083.1|organism=Fucus distichus monoicous|type=mRNA|length=264bp|location=Sequence derived from alignment at F-distichus_contig96306:1875..2138- (Fucus distichus monoicous)
ATCGAGACAACCGTGCGCACGAGGAGGTTGTTGTGGGTGGGGGCGCTGCT
CCGCATGGATGACCACAGGCTACCCAAGAGGGTCATGTCGGGAGAGGTCG
AGAACGCGGGAAAACGTGGACCGGGGGGGAAGGAGAAAGAGTGGACGGAC
TGCGTGGCAGATGATGTTCGTCTTTTTGGCATCACGAGGGACTGGAGCAC
CGCCGCACTTGATCCTGGGGAATGGTACAGCACGGTACGTGAAGGTGGCT
GTAGGTTTATGGCC
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Coding sequence (CDS) from alignment at F-distichus_contig96306:1875..2138-

>mRNA_F-distichus_contig96306.19083.1 ID=mRNA_F-distichus_contig96306.19083.1|Name=mRNA_F-distichus_contig96306.19083.1|organism=Fucus distichus monoicous|type=CDS|length=528bp|location=Sequence derived from alignment at F-distichus_contig96306:1875..2138- (Fucus distichus monoicous)
ATCGAGACAACCGTGCGCACGAGGAGGTTGTTGTGGGTGGGGGCGCTGCT
CCGCATGGATGACCACAGGCTACCCAAGAGGGTCATGTCGGGAGAGGTCG
AGAACGCGGGAAAACGTGGACCGGGGGGGAAGGAGAAAGAGTGGACGGAC
TGCGTGGCAGATGATGTTCGTCTTTTTGGCATCACGAGGGACTGGAGCAC
CGCCGCACTTGATCCTGGGGAATGGTACAGCACGGTACGTGAAGGTGGCT
GTAGGTTTATGGCCATCGAGACAACCGTGCGCACGAGGAGGTTGTTGTGG
GTGGGGGCGCTGCTCCGCATGGATGACCACAGGCTACCCAAGAGGGTCAT
GTCGGGAGAGGTCGAGAACGCGGGAAAACGTGGACCGGGGGGGAAGGAGA
AAGAGTGGACGGACTGCGTGGCAGATGATGTTCGTCTTTTTGGCATCACG
AGGGACTGGAGCACCGCCGCACTTGATCCTGGGGAATGGTACAGCACGGT
ACGTGAAGGTGGCTGTAGGTTTATGGCC
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