mRNA_F-distichus_contig96296.19080.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96296.19080.1
Unique NamemRNA_F-distichus_contig96296.19080.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96296.19080.1 vs. uniprot
Match: D7FJE8_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJE8_ECTSI)

HSP 1 Score: 232 bits (592), Expect = 3.860e-66
Identity = 161/351 (45.87%), Postives = 198/351 (56.41%), Query Frame = 1 
Query:   10 SEKLAPDRELQLGKMLVAAVQLELFQMLDEICEAGHVENDLFDDLCSDAIQEGRRAGFFHLSPDLLLAPGSGYKRLLQIRKDQIVEDIANASGLRAFAGYDCQREPSPPS---SPRLDGRMRIEGASEML--KGGLACLTRLKIGG---SASTNADAVAPSPSSSRVPEWLSPSPSSGHHRSQTQRVRDLLSSIDGLVMESEQPEPEEALVSLPPLSPEGVDHYDISS----STAGGLDGRN----KRRSTGGAYGQGERSGRFSLRTPPYREADEPGK----RSFFHQEKRW-----SVPFAMTPPDISIHGPSAARGAAEGAEAEGVEFSDKLLAEVDWLIAGTEAALG 987
            S+KL PDRE +LGKMLVAAVQLELF+MLD+ICEAG VEN+LFDDLC+D IQ+GRR+GF  ++ +LLL+PGSGYKRLLQ+RKDQI+E+IA+ +GLRA  G+DCQR  S  S   SP    R R+          G  A    L+I G   SAS N D  +PS               +GH R+QTQRVRDLLSSIDGLV ESE     EAL  +P L+P G +    ++    +  G    R+    KR+STG    +   S R SLRTPP  + +  G     R+FF  E+ W                                      +D LLAEVDWLIAGT AALG
Sbjct:   59 SDKLTPDRERELGKMLVAAVQLELFRMLDDICEAGDVENELFDDLCADTIQDGRRSGFIFMTVELLLSPGSGYKRLLQLRKDQILEEIADVAGLRALGGHDCQRSSSESSARGSPSHGLRKRVAAMDSDCGSPGSAAGGPGLQIAGGNRSASANLDEKSPSXXXXXXXXXXXXXXENGHRRTQTQRVRDLLSSIDGLVQESE-----EALTGMPSLAPNGANENGAAAXXXXAGRGSAPSRSVRGFKRQSTGAVDSRSGPSSRLSLRTPPPLDGEGDGSSHSDRAFFPNERDWRGSRFGSATTXXXXXXXXXXXXXXXXXXXXXXXXXPASADMLLAEVDWLIAGTNAALG 404
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96296.19080.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJE8_ECTSI3.860e-6645.87Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96296contigF-distichus_contig96296:45..1911 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-14_006080.1
Exons3
Model size987
Cds size987
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96296.19080.1prot_F-distichus_contig96296.19080.1Fucus distichus monoicouspolypeptideF-distichus_contig96296 45..1911 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.9667044-CDS-F-distichus_contig96296:44..3021622931139.9667044-CDS-F-distichus_contig96296:44..302Fucus distichus monoicousCDSF-distichus_contig96296 45..302 +
1690886175.1827748-CDS-F-distichus_contig96296:44..3021690886175.1827748-CDS-F-distichus_contig96296:44..302Fucus distichus monoicousCDSF-distichus_contig96296 45..302 +
1622931139.9853961-CDS-F-distichus_contig96296:676..7671622931139.9853961-CDS-F-distichus_contig96296:676..767Fucus distichus monoicousCDSF-distichus_contig96296 677..767 +
1690886175.1942132-CDS-F-distichus_contig96296:676..7671690886175.1942132-CDS-F-distichus_contig96296:676..767Fucus distichus monoicousCDSF-distichus_contig96296 677..767 +
1622931140.0092113-CDS-F-distichus_contig96296:1273..19111622931140.0092113-CDS-F-distichus_contig96296:1273..1911Fucus distichus monoicousCDSF-distichus_contig96296 1274..1911 +
1690886175.2051456-CDS-F-distichus_contig96296:1273..19111690886175.2051456-CDS-F-distichus_contig96296:1273..1911Fucus distichus monoicousCDSF-distichus_contig96296 1274..1911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96296.19080.1

>prot_F-distichus_contig96296.19080.1 ID=prot_F-distichus_contig96296.19080.1|Name=mRNA_F-distichus_contig96296.19080.1|organism=Fucus distichus monoicous|type=polypeptide|length=329bp
SRRSEKLAPDRELQLGKMLVAAVQLELFQMLDEICEAGHVENDLFDDLCS
DAIQEGRRAGFFHLSPDLLLAPGSGYKRLLQIRKDQIVEDIANASGLRAF
AGYDCQREPSPPSSPRLDGRMRIEGASEMLKGGLACLTRLKIGGSASTNA
DAVAPSPSSSRVPEWLSPSPSSGHHRSQTQRVRDLLSSIDGLVMESEQPE
PEEALVSLPPLSPEGVDHYDISSSTAGGLDGRNKRRSTGGAYGQGERSGR
FSLRTPPYREADEPGKRSFFHQEKRWSVPFAMTPPDISIHGPSAARGAAE
GAEAEGVEFSDKLLAEVDWLIAGTEAALG
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mRNA from alignment at F-distichus_contig96296:45..1911+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96296.19080.1 ID=mRNA_F-distichus_contig96296.19080.1|Name=mRNA_F-distichus_contig96296.19080.1|organism=Fucus distichus monoicous|type=mRNA|length=1867bp|location=Sequence derived from alignment at F-distichus_contig96296:45..1911+ (Fucus distichus monoicous)
TCGAGGAGGTCGGAGAAGCTCGCCCCCGACCGAGAGCTCCAGTTGGGTAA
GATGCTCGTAGCCGCGGTGCAGCTGGAGCTGTTCCAGATGCTCGACGAGA
TCTGCGAGGCCGGCCACGTGGAGAACGACTTGTTCGACGACCTCTGCAGC
GACGCGATACAGGAGGGGCGCCGCGCGGGCTTTTTCCACCTCTCTCCCGA
CCTCCTTCTTGCGCCCGGGTCGGGATACAAGCGCTTGCTCCAGATCCGAA
AGGATCAGGTGAGTCAGCCTACGTTTTCTCCTTCCTCTCGGCTGGATTTG
GATGATCTGGATTATTTGGGTGATGTGAGCGCGAGACCGGCAATCGAAAT
CTCGGCTCACTGTTTCGCGAATTGTGTTATCGCTCTTGTGGCAAGAACAT
CATCCAGTCGCTGCTTACTGCCCACCAGGTGCTAGTTGGGTTGCGTATCC
GATAGCGCTTGGAGACGTTGTGTACGATTAGCGGTGGTGATTGGGAACGC
GAGTATCGTCGACGAAAGCCTCATAATGAAAGTTCGGCTCTCTTGCCCCC
ACGTGCGAGGGTGATTTCGATATGTTTCTAATCCTTCTTCCCCGCCGCCT
CTGCCCCGCACCCCATTCTACGGGAGTATCAGATCGTGGAGGACATTGCC
AACGCGTCGGGTCTCCGCGCGTTCGCGGGATACGACTGCCAGCGAGAACC
CTCTCCACCATCGTCCCCGAGATGTGTGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGTGTGTGTATATAGTATATTAAATTACGCACAACCGCGC
AATCCGGCCCTGCCATCCTAATCATTCTATGCCATTCGCATTGATCCGCC
TAAGGGGGCATCGTGTGTGTGTGTGTGTGTGTGTGTGTATTTATGAAATT
GTACATAACCGCGCAATCCGGCCCTGTCATGTTAGTCATTCTATGCCACT
CGTAAATTGATCCTCTCAGGGGGGGATCAATAATACTTGTGCTTGTGTGT
GATGTGTACCGTTGCTTTAATCTGTTCTGAGTATACCCACCAGGACAAGG
TCTGCTTTAATCTCGGTCGGTGTCTTCTTTTAGCCAAAGGTTCAGCAGTG
CCAACATGTGTCTCGCGGTTTAAGCTGAAAGTGTCTTGGCTTCGCCTTTT
GCCAACATCAAACTCTCCTCCCTTCTCACCTCTCCCGTTCTCCCGCCCTC
CCAATTATTCGCGCTCAACGTTGCGACAGTGGACGGGAGAATGAGGATTG
AAGGGGCCTCGGAGATGTTGAAGGGGGGACTGGCTTGCCTTACGAGGCTC
AAGATTGGTGGTAGCGCGAGCACCAACGCGGACGCTGTCGCCCCGTCGCC
GAGCAGCAGCCGGGTACCGGAGTGGTTATCGCCCTCACCGAGTTCGGGAC
ATCACCGCTCTCAGACGCAGCGAGTGCGCGACCTCCTGTCGAGTATCGAC
GGATTGGTGATGGAGTCGGAGCAGCCCGAGCCGGAAGAGGCTCTCGTCAG
CCTTCCGCCGTTGTCACCCGAGGGCGTCGACCACTACGATATTTCTTCAT
CCACCGCCGGCGGTCTAGACGGCCGCAACAAGCGCCGGAGTACAGGAGGT
GCCTACGGCCAGGGGGAGCGCTCGGGGCGTTTTAGCCTACGAACCCCACC
ATACCGAGAAGCTGACGAGCCAGGAAAGCGGTCCTTTTTCCATCAAGAGA
AGCGATGGAGCGTCCCCTTCGCGATGACGCCTCCGGATATTTCCATCCAC
GGGCCATCCGCTGCGCGCGGAGCAGCAGAGGGCGCCGAGGCAGAGGGCGT
GGAGTTTTCTGATAAACTTCTCGCAGAGGTTGACTGGTTGATCGCCGGAA
CGGAAGCAGCGCTCGGT
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Coding sequence (CDS) from alignment at F-distichus_contig96296:45..1911+

>mRNA_F-distichus_contig96296.19080.1 ID=mRNA_F-distichus_contig96296.19080.1|Name=mRNA_F-distichus_contig96296.19080.1|organism=Fucus distichus monoicous|type=CDS|length=1974bp|location=Sequence derived from alignment at F-distichus_contig96296:45..1911+ (Fucus distichus monoicous)
TCGAGGAGGTCGGAGAAGCTCGCCCCCGACCGAGAGCTCCAGTTGGGTAA
GATGCTCGTAGCCGCGGTGCAGCTGGAGCTGTTCCAGATGCTCGACGAGA
TCTGCGAGGCCGGCCACGTGGAGAACGACTTGTTCGACGACCTCTGCAGC
GACGCGATACAGGAGGGGCGCCGCGCGGGCTTTTTCCACCTCTCTCCCGA
CCTCCTTCTTGCGCCCGGGTCGGGATACAAGCGCTTGCTCCAGATCCGAA
AGGATCAGTCGAGGAGGTCGGAGAAGCTCGCCCCCGACCGAGAGCTCCAG
TTGGGTAAGATGCTCGTAGCCGCGGTGCAGCTGGAGCTGTTCCAGATGCT
CGACGAGATCTGCGAGGCCGGCCACGTGGAGAACGACTTGTTCGACGACC
TCTGCAGCGACGCGATACAGGAGGGGCGCCGCGCGGGCTTTTTCCACCTC
TCTCCCGACCTCCTTCTTGCGCCCGGGTCGGGATACAAGCGCTTGCTCCA
GATCCGAAAGGATCAGATCGTGGAGGACATTGCCAACGCGTCGGGTCTCC
GCGCGTTCGCGGGATACGACTGCCAGCGAGAACCCTCTCCACCATCGTCC
CCGAGATATCGTGGAGGACATTGCCAACGCGTCGGGTCTCCGCGCGTTCG
CGGGATACGACTGCCAGCGAGAACCCTCTCCACCATCGTCCCCGAGATTG
GACGGGAGAATGAGGATTGAAGGGGCCTCGGAGATGTTGAAGGGGGGACT
GGCTTGCCTTACGAGGCTCAAGATTGGTGGTAGCGCGAGCACCAACGCGG
ACGCTGTCGCCCCGTCGCCGAGCAGCAGCCGGGTACCGGAGTGGTTATCG
CCCTCACCGAGTTCGGGACATCACCGCTCTCAGACGCAGCGAGTGCGCGA
CCTCCTGTCGAGTATCGACGGATTGGTGATGGAGTCGGAGCAGCCCGAGC
CGGAAGAGGCTCTCGTCAGCCTTCCGCCGTTGTCACCCGAGGGCGTCGAC
CACTACGATATTTCTTCATCCACCGCCGGCGGTCTAGACGGCCGCAACAA
GCGCCGGAGTACAGGAGGTGCCTACGGCCAGGGGGAGCGCTCGGGGCGTT
TTAGCCTACGAACCCCACCATACCGAGAAGCTGACGAGCCAGGAAAGCGG
TCCTTTTTCCATCAAGAGAAGCGATGGAGCGTCCCCTTCGCGATGACGCC
TCCGGATATTTCCATCCACGGGCCATCCGCTGCGCGCGGAGCAGCAGAGG
GCGCCGAGGCAGAGGGCGTGGAGTTTTCTGATAAACTTCTCGCAGAGGTT
GACTGGTTGATCGCCGGAACGGAAGCAGCGCTCGGTTGGACGGGAGAATG
AGGATTGAAGGGGCCTCGGAGATGTTGAAGGGGGGACTGGCTTGCCTTAC
GAGGCTCAAGATTGGTGGTAGCGCGAGCACCAACGCGGACGCTGTCGCCC
CGTCGCCGAGCAGCAGCCGGGTACCGGAGTGGTTATCGCCCTCACCGAGT
TCGGGACATCACCGCTCTCAGACGCAGCGAGTGCGCGACCTCCTGTCGAG
TATCGACGGATTGGTGATGGAGTCGGAGCAGCCCGAGCCGGAAGAGGCTC
TCGTCAGCCTTCCGCCGTTGTCACCCGAGGGCGTCGACCACTACGATATT
TCTTCATCCACCGCCGGCGGTCTAGACGGCCGCAACAAGCGCCGGAGTAC
AGGAGGTGCCTACGGCCAGGGGGAGCGCTCGGGGCGTTTTAGCCTACGAA
CCCCACCATACCGAGAAGCTGACGAGCCAGGAAAGCGGTCCTTTTTCCAT
CAAGAGAAGCGATGGAGCGTCCCCTTCGCGATGACGCCTCCGGATATTTC
CATCCACGGGCCATCCGCTGCGCGCGGAGCAGCAGAGGGCGCCGAGGCAG
AGGGCGTGGAGTTTTCTGATAAACTTCTCGCAGAGGTTGACTGGTTGATC
GCCGGAACGGAAGCAGCGCTCGGT
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