mRNA_F-distichus_contig96293.19079.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96293.19079.1
Unique NamemRNA_F-distichus_contig96293.19079.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig96293.19079.1 vs. uniprot
Match: A0A7S3HT26_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3HT26_9STRA)

HSP 1 Score: 107 bits (266), Expect = 3.280e-24
Identity = 62/138 (44.93%), Postives = 77/138 (55.80%), Query Frame = 1
Query:    4 VHMGTVCDICEMSPIVGTRYKCTVGRDFDLCEACEAVIGADSPFPFLEIRTP---PKPSLVSA-GNAPAATYVSASATRYEASDPAVHTGICCDACFVKPIVGTRYKCAVRSDFDLCEACEPVTGAYSPFPFLKIRTP 405
            VH G  CD C++ PIVG R++CT   D+DLC ACEA + A  PFP ++I      PK  +    G  P A+           + P+V TGI CD C   PI+G RYKCAVR DFDLC ACE       P+P +KI  P
Sbjct:  468 VHQGVRCDECKVCPIVGARFQCTGRDDYDLCGACEA-LKAHQPFPMVKIMDSTQRPKDFVYEVRGAKPVASRT--------LTHPSVQTGIRCDECHQSPILGPRYKCAVRDDFDLCSACE--AKRVQPYPTVKIYDP 594          
BLAST of mRNA_F-distichus_contig96293.19079.1 vs. uniprot
Match: A0A4D9CU37_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CU37_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 1.190e-21
Identity = 59/141 (41.84%), Postives = 75/141 (53.19%), Query Frame = 1
Query:    4 VHMGTVCDICEMSPIVGTRYKCTVGRDFDLCEACEAVIGADS-PFPFLEIRTPPKPSLVSAGNAPAATYVSASATRYEASDPAVHTGICCDACFVKPIVGTRYKCAVRSDFDLCEACEPVTGAYSP--FPFLKIRTPLKVP 417
            +H+G  CD C +S   G RYK  V RD+DLC ACEA +     P+P L+I +P   +L  AG           A  ++AS    H G+ CD C V PIVG R+ CA R D+DLCE CE   G      +P LKI  P + P
Sbjct:  415 LHLGVECDHCHVSDFSGARYKDAVRRDYDLCAACEAALPPSHLPYPLLKITSP---ALAPAGVLTVLPPERDIAYGHDASH--THVGVKCDGCGVVPIVGARFMCAKRQDYDLCEECEAREGGREGERYPMLKIVRPSQAP 550          
BLAST of mRNA_F-distichus_contig96293.19079.1 vs. uniprot
Match: A0A225WIR7_9STRA (Uncharacterized protein n=1 Tax=Phytophthora megakarya TaxID=4795 RepID=A0A225WIR7_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 2.660e-18
Identity = 47/117 (40.17%), Postives = 59/117 (50.43%), Query Frame = 1
Query:    4 VHMGTVCDICEMSPIVGTRYKCTVGRDFDLCEACEAVIGADSPFPFLEIRTPPKPSLVSAGNAPAATYVSASATRYEASDPAVHTGICCDACFVKPIVGTRYKCAVRSDFDLCEACE 354
            VH+G +CD CEM P+VG RYK     DFDLC+ CEA     S  PF++I  P                 S +       D  VH  + CD C + P+VG R+K     DFDLC+ACE
Sbjct:  225 VHLGVICDGCEMDPLVGVRYKSLEEMDFDLCQDCEASGKYLSHEPFIKITDP-----------------SRAPKHKRTPDLLVHPFVVCDGCEMSPLVGPRFKSKTAEDFDLCQACE 324          
BLAST of mRNA_F-distichus_contig96293.19079.1 vs. uniprot
Match: A0A8K0UPA9_9AGAM (Uncharacterized protein n=1 Tax=Cristinia sonorae TaxID=1940300 RepID=A0A8K0UPA9_9AGAM)

HSP 1 Score: 85.9 bits (211), Expect = 8.460e-17
Identity = 48/118 (40.68%), Postives = 59/118 (50.00%), Query Frame = 1
Query:    7 HMGTVCDICEMSPIVGTRYKCTVGRDFDLCEACEAVIGADSPFP---FLEIRTPPKPSLVSAGNAPAATYVSASATRYEASDPAVHTGICCDACFVKPIVGTRYKCAVRSDFDLCEAC 351
            H+G  CD C +  I G R+KC    D+D+CE C     A S  P   F  I  P   +    G A A  Y      + E++   VHTGI CD+C  KPIVG R KC    DFDLC +C
Sbjct:  437 HLGITCDGCNVRNITGVRFKCLECEDYDVCEKCRTTPAAMSQHPPHAFFPILKPE--NFAEYGRAKAGRYAWPPTMKNESAK--VHTGITCDSCSQKPIVGVRAKCLECDDFDLCRSC 550          
BLAST of mRNA_F-distichus_contig96293.19079.1 vs. uniprot
Match: A0A6H5JI15_9PHAE (ZZ-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JI15_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 2.790e-16
Identity = 42/58 (72.41%), Postives = 46/58 (79.31%), Query Frame = 1
Query:  250 VHTGICCDACFVKPIVGTRYKCAVRSDFDLCEACE--PVTGAYSPFPFLKIRTPLKVP 417
            VH G+ CDAC V PI+GTRYKCAVR+DFDLCE CE  PV G  SPFPFLKIRTP + P
Sbjct:  430 VHHGVKCDACDVCPIIGTRYKCAVRADFDLCEECERAPV-GQGSPFPFLKIRTPTQAP 486          
BLAST of mRNA_F-distichus_contig96293.19079.1 vs. uniprot
Match: A0A4V4HHF2_DENBC (Uncharacterized protein n=1 Tax=Dendrothele bispora (strain CBS 962.96) TaxID=1314807 RepID=A0A4V4HHF2_DENBC)

HSP 1 Score: 81.3 bits (199), Expect = 3.400e-16
Identity = 44/116 (37.93%), Postives = 57/116 (49.14%), Query Frame = 1
Query:    4 VHMGTVCDICEMSPIVGTRYKCTVGRDFDLCEACEAVIGADSPFPFLEIRTPPKPSLVSAGNAPAATYVSASATRYEASDPAVHTGICCDACFVKPIVGTRYKCAVRSDFDLCEAC 351
            VH+G  CD CEMSPIVG RYKC +  DFDLC  C      +SP P+   R P   + +          + +     +     +H GI CD C   P+ G RY C    D+DLC +C
Sbjct:   26 VHLGFRCDGCEMSPIVGIRYKCQICPDFDLCATC-----CNSPEPYY--RHPRNHAFI---------LIESPMAGEQGQLVQIHYGIFCDGCQQSPLKGDRYHCKTCPDYDLCRSC 125          
BLAST of mRNA_F-distichus_contig96293.19079.1 vs. uniprot
Match: A0A7J7JYK0_BUGNE (Uncharacterized protein n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JYK0_BUGNE)

HSP 1 Score: 75.5 bits (184), Expect = 1.020e-13
Identity = 44/122 (36.07%), Postives = 60/122 (49.18%), Query Frame = 1
Query:    7 HMGTVCDICEMSPIVGTRYKCTVGRDFDLCEACEAVIGADS---PFPFLEIRTPPKPSLVSAGNAPAATYVSASATRYEASDPAVHTG---ICCDACFVKPIVGTRYKCAVRSDFDLCEACE 354
            H   +CD C +S   G R+KC +  D+DLCE CEA    D       F++++   KP   SA         S      +  D  +H+G     CD C   PI GTR+KC V  +FDLC++CE
Sbjct:  111 HRSVICDECGVSAFTGARFKCGMCEDYDLCEDCEAKPREDVHNIEHIFIKMK---KPRTSSATGRRVLHEHSTLMGMTQDMDSNIHSGKDNFQCDCCHTSPISGTRFKCGVCENFDLCQSCE 229          
BLAST of mRNA_F-distichus_contig96293.19079.1 vs. uniprot
Match: G4TER7_SERID (Related to micromolar calcium activated neutral protease 1 (Capn1) n=1 Tax=Serendipita indica (strain DSM 11827) TaxID=1109443 RepID=G4TER7_SERID)

HSP 1 Score: 76.3 bits (186), Expect = 1.890e-13
Identity = 45/141 (31.91%), Postives = 61/141 (43.26%), Query Frame = 1
Query:    1 MVHMGTVCDICEMSPIVGTRYKCTVGR--DFDLCEACEAVIGADSPFPFLEIRTPPKPSLVSAGNAPAATYVSASATRYEASDPAVHTGICCDACFVKPIVGTRYKCA---VRSDFDLCEACEPVTGAYSPFPFLKIRTPL 408
            +VH   +CD+C++SPI+G RY+CT     ++D+C+ C      D     L I  P                          SD  VHT   C  C  +PI G RY C     + DFD+CEAC   TG       +  +TPL
Sbjct:  668 IVHSDFMCDVCQVSPIIGVRYRCTNPEHPEYDMCQGCYDKKEHDPTHEILVISQP-------------------------RSDEPVHTWFSCSICKCEPIRGIRYHCPRPECQDDFDMCEACRASTGHDPTHVLMMFQTPL 783          
BLAST of mRNA_F-distichus_contig96293.19079.1 vs. uniprot
Match: A0A815WN45_9BILA (Hypothetical protein n=4 Tax=Rotaria sordida TaxID=392033 RepID=A0A815WN45_9BILA)

HSP 1 Score: 72.8 bits (177), Expect = 2.850e-12
Identity = 42/119 (35.29%), Postives = 63/119 (52.94%), Query Frame = 1
Query:    4 VHMGTVCDICEMSPIVGTRYKCTVGRDFDLCEACEAV--IGADSPFPFLEIRTPPKPSLVSAGNAPAATYVSASATRYEASDPAVHTGICCDACFVKPIVGTRYKCAVRSDFDLCEACE 354
            +H    CD C+MSPI+G RYKC    + D C++C++V     DS   +      P   +  +   P + Y++ + T+        H    C++CF+KPI+G RYKCA R   +LCE CE
Sbjct:  410 IHSRITCDGCDMSPIIGDRYKCLFCSNIDFCQSCKSVSRTNYDSNHQYNH----PLLCIKDSNEYPKSVYLN-NRTKIN------HKNKQCNSCFMKPIIGIRYKCACR--INLCEKCE 515          
BLAST of mRNA_F-distichus_contig96293.19079.1 vs. uniprot
Match: UPI00189B065E (uncharacterized protein LOC119446117 isoform X1 n=2 Tax=Dermacentor silvarum TaxID=543639 RepID=UPI00189B065E)

HSP 1 Score: 72.8 bits (177), Expect = 3.010e-12
Identity = 41/115 (35.65%), Postives = 53/115 (46.09%), Query Frame = 1
Query:    7 HMGTVCDICEMSPIVGTRYKCTVGRDFDLCEACEAVIGADSPFPFLEIRTPPKPSLVSAGNAPAATYVSASATRYEASDPAVHTGICCDACFVKPIVGTRYKCAVRSDFDLCEAC 351
            H G  CD C    I+GTR+KC +  D+DLC  C A    +    FL +  P  P++    N P       SA  +  +      GI C  C    I GTR+KC V  D+DLC  C
Sbjct:  456 HTGIYCDACGERGIIGTRWKCELCYDYDLCTPCYARGEHNQEHTFLRLNNPGDPAI----NVPPRKASGTSAVSHLPTGGIQFNGITCKVCGRAEISGTRWKCDVCVDYDLCAPC 566          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96293.19079.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3HT26_9STRA3.280e-2444.93Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9CU37_9STRA1.190e-2141.84Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A225WIR7_9STRA2.660e-1840.17Uncharacterized protein n=1 Tax=Phytophthora megak... [more]
A0A8K0UPA9_9AGAM8.460e-1740.68Uncharacterized protein n=1 Tax=Cristinia sonorae ... [more]
A0A6H5JI15_9PHAE2.790e-1672.41ZZ-type domain-containing protein n=1 Tax=Ectocarp... [more]
A0A4V4HHF2_DENBC3.400e-1637.93Uncharacterized protein n=1 Tax=Dendrothele bispor... [more]
A0A7J7JYK0_BUGNE1.020e-1336.07Uncharacterized protein n=1 Tax=Bugula neritina Ta... [more]
G4TER7_SERID1.890e-1331.91Related to micromolar calcium activated neutral pr... [more]
A0A815WN45_9BILA2.850e-1235.29Hypothetical protein n=4 Tax=Rotaria sordida TaxID... [more]
UPI00189B065E3.010e-1235.65uncharacterized protein LOC119446117 isoform X1 n=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96293contigF-distichus_contig96293:1122..1658 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score103.2
Seed ortholog evalue9.9e-20
Seed eggNOG ortholog36331.EPrPI00000024107
KEGG koko:K05925,ko:K17987,ko:K21997
KEGG Pathwayko04137,map04137
Hectar predicted targeting categoryother localisation
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000328,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005770,GO:0005771,GO:0005773,GO:0005775,GO:0005829,GO:0006914,GO:0008104,GO:0008150,GO:0008152,GO:0009056,GO:0009987,GO:0012505,GO:0016043,GO:0016236,GO:0022607,GO:0031410,GO:0031974,GO:0031982,GO:0032182,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0034622,GO:0043130,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044248,GO:0044422,GO:0044424,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051258,GO:0051259,GO:0051641,GO:0061919,GO:0061957,GO:0065003,GO:0070013,GO:0070727,GO:0071840,GO:0072665,GO:0097708,GO:0120113
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG4582@1,KOG4582@2759
EC2.1.1.62
COG Functional cat.V
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03029,ko04131
Exons2
Model size417
Cds size417
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.905486-CDS-F-distichus_contig96293:1121..13731622931139.905486-CDS-F-distichus_contig96293:1121..1373Fucus distichus monoicousCDSF-distichus_contig96293 1122..1373 -
1690886175.1543639-CDS-F-distichus_contig96293:1121..13731690886175.1543639-CDS-F-distichus_contig96293:1121..1373Fucus distichus monoicousCDSF-distichus_contig96293 1122..1373 -
1622931139.9241707-CDS-F-distichus_contig96293:1493..16581622931139.9241707-CDS-F-distichus_contig96293:1493..1658Fucus distichus monoicousCDSF-distichus_contig96293 1494..1658 -
1690886175.1731384-CDS-F-distichus_contig96293:1493..16581690886175.1731384-CDS-F-distichus_contig96293:1493..1658Fucus distichus monoicousCDSF-distichus_contig96293 1494..1658 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96293.19079.1prot_F-distichus_contig96293.19079.1Fucus distichus monoicouspolypeptideF-distichus_contig96293 1122..1658 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96293.19079.1

>prot_F-distichus_contig96293.19079.1 ID=prot_F-distichus_contig96293.19079.1|Name=mRNA_F-distichus_contig96293.19079.1|organism=Fucus distichus monoicous|type=polypeptide|length=139bp
MVHMGTVCDICEMSPIVGTRYKCTVGRDFDLCEACEAVIGADSPFPFLEI
RTPPKPSLVSAGNAPAATYVSASATRYEASDPAVHTGICCDACFVKPIVG
TRYKCAVRSDFDLCEACEPVTGAYSPFPFLKIRTPLKVP
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mRNA from alignment at F-distichus_contig96293:1122..1658-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96293.19079.1 ID=mRNA_F-distichus_contig96293.19079.1|Name=mRNA_F-distichus_contig96293.19079.1|organism=Fucus distichus monoicous|type=mRNA|length=537bp|location=Sequence derived from alignment at F-distichus_contig96293:1122..1658- (Fucus distichus monoicous)
ATGGTGCACATGGGCACCGTGTGCGATATCTGCGAGATGAGCCCGATTGT AGGCACGCGGTACAAGTGCACGGTGGGCCGCGATTTCGACTTGTGCGAGG CGTGCGAGGCCGTCATTGGCGCCGATTCTCCGTTCCCCTTCCTCGAGATT AGGACGCCTCCCAAGGTCCCCTTGACGATCGACTGCCTACTCTGGCCCGA CCAGCCCGCCAACATCGAACAGGCCTCGACGGTAGACTTGACCCCTGCTA ACACCAGTGGCGCTGTCCCGGTGGTTCCCGCCCAGCCATCTCTTGTGTCA GCTGGCAACGCTCCCGCTGCTACATATGTTTCGGCTTCCGCTACTCGCTA TGAAGCTAGTGACCCGGCGGTGCACACGGGCATCTGTTGTGACGCCTGCT TCGTGAAACCGATTGTGGGCACAAGGTACAAGTGCGCGGTGCGCAGCGAC TTCGACCTGTGCGAGGCGTGCGAGCCCGTTACCGGCGCCTATTCCCCGTT CCCCTTCCTCAAGATTCGGACGCCTCTCAAGGTCCCC
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Coding sequence (CDS) from alignment at F-distichus_contig96293:1122..1658-

>mRNA_F-distichus_contig96293.19079.1 ID=mRNA_F-distichus_contig96293.19079.1|Name=mRNA_F-distichus_contig96293.19079.1|organism=Fucus distichus monoicous|type=CDS|length=834bp|location=Sequence derived from alignment at F-distichus_contig96293:1122..1658- (Fucus distichus monoicous)
ATGGTGCACATGGGCACCGTGTGCGATATCTGCGAGATGAGCCCGATTGT
AGGCACGCGGTACAAGTGCACGGTGGGCCGCGATTTCGACTTGTGCGAGG
CGTGCGAGGCCGTCATTGGCGCCGATTCTCCGTTCCCCTTCCTCGAGATT
AGGACGCCTCCCAAGATGGTGCACATGGGCACCGTGTGCGATATCTGCGA
GATGAGCCCGATTGTAGGCACGCGGTACAAGTGCACGGTGGGCCGCGATT
TCGACTTGTGCGAGGCGTGCGAGGCCGTCATTGGCGCCGATTCTCCGTTC
CCCTTCCTCGAGATTAGGACGCCTCCCAAGCCATCTCTTGTGTCAGCTGG
CAACGCTCCCGCTGCTACATATGTTTCGGCTTCCGCTACTCGCTATGAAG
CTAGTGACCCGGCGGTGCACACGGGCATCTGTTGTGACGCCTGCTTCGTG
AAACCGATTGTGGGCACAAGGTACAAGTGCGCGGTGCGCAGCGACTTCGA
CCTGTGCGAGGCGTGCGAGCCCGTTACCGGCGCCTATTCCCCGTTCCCCT
TCCTCAAGATTCGGACGCCTCTCAAGGTCCCCCCATCTCTTGTGTCAGCT
GGCAACGCTCCCGCTGCTACATATGTTTCGGCTTCCGCTACTCGCTATGA
AGCTAGTGACCCGGCGGTGCACACGGGCATCTGTTGTGACGCCTGCTTCG
TGAAACCGATTGTGGGCACAAGGTACAAGTGCGCGGTGCGCAGCGACTTC
GACCTGTGCGAGGCGTGCGAGCCCGTTACCGGCGCCTATTCCCCGTTCCC
CTTCCTCAAGATTCGGACGCCTCTCAAGGTCCCC
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