mRNA_F-distichus_contig96196.19072.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96196.19072.1
Unique NamemRNA_F-distichus_contig96196.19072.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig96196.19072.1 vs. uniprot
Match: D7G5L8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5L8_ECTSI)

HSP 1 Score: 225 bits (574), Expect = 1.400e-69
Identity = 106/125 (84.80%), Postives = 120/125 (96.00%), Query Frame = 1
Query:    7 NKQVVPCFPPEYEILKVFRESYEGFLKDLLLPVVCGEDRMADCDVRDILEAIKWLEYYNTRVDR-QEFAEAIVGLNAAYLTRIKAQIMKWVQNLRAQRLEGQLDSEGHYVTTLPDDMFNLINMQV 378
            + +VVPCFPPEY+IL+VFR+SYEGFLKDLLLP+VCGED+MADCDVRDILEAIKWLEYYNT+V+R +EFA+AI GLNAAYLTRIKAQI+KWVQNLRAQ LE QLD+EGHYVTTLPDDMFNLINMQ+
Sbjct:  295 DSEVVPCFPPEYDILRVFRDSYEGFLKDLLLPLVCGEDKMADCDVRDILEAIKWLEYYNTKVERCEEFAQAIGGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQI 419          
BLAST of mRNA_F-distichus_contig96196.19072.1 vs. uniprot
Match: A0A6H5KMB3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KMB3_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 6.320e-67
Identity = 105/125 (84.00%), Postives = 118/125 (94.40%), Query Frame = 1
Query:    7 NKQVVPCFPPEYEILKVFRESYEGFLKDLLLPVVCGEDRMADCDVRDILEAIKWLEYYNTRVDR-QEFAEAIVGLNAAYLTRIKAQIMKWVQNLRAQRLEGQLDSEGHYVTTLPDDMFNLINMQV 378
              +VVPCFP EY+IL+VFR+SYEGFLKDLLLP+VCGED+MADCDVRDILEAIKWLEYYNT+V+R +EFA+AI GLNAAYLTRIKAQI+KWVQNLRAQ LE QLD+EGHYVTTLPDDMFNLINMQ+
Sbjct:  132 ESEVVPCFPREYDILRVFRDSYEGFLKDLLLPLVCGEDKMADCDVRDILEAIKWLEYYNTKVERCEEFAQAINGLNAAYLTRIKAQIIKWVQNLRAQHLEVQLDAEGHYVTTLPDDMFNLINMQI 256          
BLAST of mRNA_F-distichus_contig96196.19072.1 vs. uniprot
Match: A0A835YNU2_9STRA (Exocyst complex component Sec6-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YNU2_9STRA)

HSP 1 Score: 160 bits (406), Expect = 1.700e-43
Identity = 77/125 (61.60%), Postives = 99/125 (79.20%), Query Frame = 1
Query:    7 NKQVVPCFPPEYEILKVFRESYEGFLKDLLLPVVCGEDRMADCDVRDILEAIKWLEYYNTRVDRQE-FAEAIVGLNAAYLTRIKAQIMKWVQNLRAQRLEGQLDSEGHYVTTLPDDMFNLINMQV 378
            ++ VVPCFPP YEILKVFR +YEGFL DLL P+V  ++R+   DV+D+LEAIKWLEYY ++V+  + FA+AIV LN+ YL RIKAQIMKWV NL+AQ  E    S+G ++TT PDDMFNL+N+Q+
Sbjct:  313 SELVVPCFPPHYEILKVFRTAYEGFLNDLLYPLVSSQERIDTYDVKDMLEAIKWLEYYVSKVEHNDKFAKAIVDLNSMYLKRIKAQIMKWVHNLKAQEPELIQSSDGKWLTTFPDDMFNLVNVQI 437          
BLAST of mRNA_F-distichus_contig96196.19072.1 vs. uniprot
Match: A0A8J2SHR9_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2SHR9_9STRA)

HSP 1 Score: 72.8 bits (177), Expect = 2.000e-12
Identity = 40/150 (26.67%), Postives = 72/150 (48.00%), Query Frame = 1
Query:    7 NKQVVPCFPPEYEILKVFRESYEGFLKDLLLPVVCGEDRMADCDVRDILEAIKWLEYYNTRVDRQE--------------------------FAEAIVGLNAAYLTRIKAQIMKWVQNLRAQRLEGQLDSEGHYVTTLPDDMFNLINMQV 378
            + ++ PC PP + +++++R + E  +   L P    ++     +V ++++  +WL+ YN  VD+ +                          F EA   L A YL R+  Q+  W  N+RA++   +LD  G  VTT P+DMF ++ +QV
Sbjct:  528 HDKLKPCVPPRWPLVRIYRAAVEAHVTSQLQPFWSRDE----LEVAELMKVYEWLQAYNALVDKIDPICEEDNFSDDDDELPPLTFRGPSSLFNEAAEKLMAQYLARVGDQVEGWFGNIRAKKAAPRLDEHGRPVTTRPEDMFQIVQLQV 673          
BLAST of mRNA_F-distichus_contig96196.19072.1 vs. uniprot
Match: A0A2D4CDE3_PYTIN (Dolichyl-diphosphooligosaccharide--protein glycosyltransferase 48 kDa subunit n=2 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4CDE3_PYTIN)

HSP 1 Score: 70.5 bits (171), Expect = 1.320e-11
Identity = 37/131 (28.24%), Postives = 69/131 (52.67%), Query Frame = 1
Query:    7 NKQVVPCFPPEYEILKVFRESYEGFLKDLLLPVVCGEDRMADCDVRDILEAIKWLEYYNTRVDRQEFAEAIVGLN-------AAYLTRIKAQIMKWVQNLRAQRLEGQLDSEGHYVTTLPDDMFNLINMQV 378
               VVPCFPP+ ++L +F  +Y   L++     +  +    +  + + L+ ++W+EYYNT + + + A A V L+       + YL +I+ QI  WV N+  +  E  +   G   +T P+D+ N++  Q+
Sbjct:  340 QSDVVPCFPPDIDVLHIFAGTYNTILEN----EISRQCTQPEVGIAERLQLVQWIEYYNTEILKYKRARASVVLDQTAQMLMSLYLDQIQGQIHMWVTNVWKRDEEIVVGLHGELQSTRPNDIINILKSQI 466          
BLAST of mRNA_F-distichus_contig96196.19072.1 vs. uniprot
Match: A0A7S2D483_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2D483_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 3.170e-10
Identity = 39/126 (30.95%), Postives = 66/126 (52.38%), Query Frame = 1
Query:    7 NKQVVPCFPPEYEILKVFRESYEGFLKDLLLPVVC--GEDRMADCDVRDILEAIKWLEYYNTRVDR-------QEFAEAIVGLNAAYLTRIKAQIMKWVQNLRAQRLEGQLDSEGHYVTTLPDDMF 357
            ++ VVPCFPP+Y+ILK++R +YE FL++ +   +    E  ++  D   +L  I+WL+ YN  +          +F  A V     YL ++  Q+ KW  N    ++E     +G + T  P+D+F
Sbjct:   77 HQYVVPCFPPDYQILKMWRHAYEEFLENHIESHLLHNNEGTVSHMDPEGLLRMIEWLDKYNDTMKDIGAEGTCAKFEVAAVECLNEYLLKMGKQLSKWT-NKDTWKVEVLRGIDGDFFTGTPEDIF 201          
BLAST of mRNA_F-distichus_contig96196.19072.1 vs. uniprot
Match: A0A7S1TRV3_9STRA (Hypothetical protein (Fragment) n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TRV3_9STRA)

HSP 1 Score: 64.7 bits (156), Expect = 1.300e-9
Identity = 35/141 (24.82%), Postives = 67/141 (47.52%), Query Frame = 1
Query:   16 VVPCFPPEYEILKVFRESYEGFLKDLLLPVVCGEDRMADCDVRDILEAIKWLEYYNTRVDR-------QEFAEAIVGLNAAYLTRIKAQIMKWVQNLRAQRLEG-------------QLDSEGHYVTTLPDDMFNLINMQV 378
            + P FP  Y ++ +F++ YE F K  L  +   ++ +A+    + L+ I+WL  Y   +D         E  +    L   YL  ++  +M+W +N+  +  +              Q D++G  ++  P+D+FN+IN+QV
Sbjct:  252 ITPLFPESYGLVGIFKDKYEEFFKLQLRSMFLNDEAVANLQPGETLKLIEWLGAYEDFLDDLGIGPPCAELRDGAAPLTRRYLDHVREMVMQWFENISNRWFKRIFDPDPDEEDEQYQKDADGRPISAQPEDVFNVINIQV 392          
BLAST of mRNA_F-distichus_contig96196.19072.1 vs. uniprot
Match: F0Y5W6_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5W6_AURAN)

HSP 1 Score: 61.6 bits (148), Expect = 1.610e-8
Identity = 42/150 (28.00%), Postives = 62/150 (41.33%), Query Frame = 1
Query:   16 VVPCFPPEYEILKVFRESYEGFLKDLLLPVVCGEDRMADCDVRDILEAIKWLEYYNT-----------------------------RVDRQEFAEAIVGLNAAYLTRIKAQIMKWVQNLRAQRLEGQLDSEGHYVTTLPDDMFNLINMQV 378
            + P  PP +   +V R + E  + +  L  +    R  D +V ++ +  +WLE YN                              R   + FA A   L   YL RI  Q+  W   +RA++ E + D  G  VTT P+DMF +I MQV
Sbjct:  474 LAPLLPPSWRCARVCRSALEAHV-ERQLGQLWSPARARDLEVEELFQVSEWLETYNAILSEIDPVADDDXXXXXXXXARAAAPLRPRGPAKAFATAGAFLMGEYLDRIAKQVESWFVAIRARKAEPRADPAGRLVTTRPEDMFQVITMQV 622          
BLAST of mRNA_F-distichus_contig96196.19072.1 vs. uniprot
Match: A0A196SIJ5_BLAHN (Sec6 n=1 Tax=Blastocystis sp. subtype 1 (strain ATCC 50177 / NandII) TaxID=478820 RepID=A0A196SIJ5_BLAHN)

HSP 1 Score: 51.6 bits (122), Expect = 4.910e-5
Identity = 34/127 (26.77%), Postives = 57/127 (44.88%), Query Frame = 1
Query:   13 QVVPCFPPEYEILKVFRESYEGFLKDLLLPVVCGEDRMADCDVRDILEAIKWLEYYNTRVDR------QEFAEAIVGLNAAYLTRIKAQIMKWVQNLRAQRLEGQLDSEGHYVTTLPDDMFNLINMQ 375
            ++VPCFPP Y IL+ F   Y     + + P           +  +IL  ++WL+ +   V          F EA   L   + +   +++  W + +  +R       EGH VT +P+D+F+LI  Q
Sbjct:  291 ELVPCFPPHYNILQFFITQYAVIANNNMQPYYDDPT----LEPGEILVLVEWLDSFLEEVRGWGCEPVAVFVEAKERLMQKFESSCTSRMEIWFKRILERRDVPMESEEGHLVTAVPEDLFSLIKTQ 413          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96196.19072.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
D7G5L8_ECTSI1.400e-6984.80Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KMB3_9PHAE6.320e-6784.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YNU2_9STRA1.700e-4361.60Exocyst complex component Sec6-domain-containing p... [more]
A0A8J2SHR9_9STRA2.000e-1226.67Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A2D4CDE3_PYTIN1.320e-1128.24Dolichyl-diphosphooligosaccharide--protein glycosy... [more]
A0A7S2D483_9STRA3.170e-1030.95Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A7S1TRV3_9STRA1.300e-924.82Hypothetical protein (Fragment) n=2 Tax=Phaeomonas... [more]
F0Y5W6_AURAN1.610e-828.00Uncharacterized protein n=1 Tax=Aureococcus anopha... [more]
A0A196SIJ5_BLAHN4.910e-526.77Sec6 n=1 Tax=Blastocystis sp. subtype 1 (strain AT... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96196contigF-distichus_contig96196:177..1722 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score227.6
Seed ortholog evalue3.2e-57
Seed eggNOG ortholog2880.D7G5L8
Preferred nameExoc3l2
KEGG koko:K06110,ko:K19988
Hectar predicted targeting categoryother localisation
EggNOG free text desc.exocyst localization
EggNOG OGsCOG5173@1,KOG2286@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size378
Cds size378
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.1763494-CDS-F-distichus_contig96196:176..3531622931139.1763494-CDS-F-distichus_contig96196:176..353Fucus distichus monoicousCDSF-distichus_contig96196 177..353 -
1690886174.800051-CDS-F-distichus_contig96196:176..3531690886174.800051-CDS-F-distichus_contig96196:176..353Fucus distichus monoicousCDSF-distichus_contig96196 177..353 -
1622931139.1968076-CDS-F-distichus_contig96196:1521..17221622931139.1968076-CDS-F-distichus_contig96196:1521..1722Fucus distichus monoicousCDSF-distichus_contig96196 1522..1722 -
1690886174.818049-CDS-F-distichus_contig96196:1521..17221690886174.818049-CDS-F-distichus_contig96196:1521..1722Fucus distichus monoicousCDSF-distichus_contig96196 1522..1722 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96196.19072.1prot_F-distichus_contig96196.19072.1Fucus distichus monoicouspolypeptideF-distichus_contig96196 177..1722 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96196.19072.1

>prot_F-distichus_contig96196.19072.1 ID=prot_F-distichus_contig96196.19072.1|Name=mRNA_F-distichus_contig96196.19072.1|organism=Fucus distichus monoicous|type=polypeptide|length=126bp
MKNKQVVPCFPPEYEILKVFRESYEGFLKDLLLPVVCGEDRMADCDVRDI
LEAIKWLEYYNTRVDRQEFAEAIVGLNAAYLTRIKAQIMKWVQNLRAQRL
EGQLDSEGHYVTTLPDDMFNLINMQV
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mRNA from alignment at F-distichus_contig96196:177..1722-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96196.19072.1 ID=mRNA_F-distichus_contig96196.19072.1|Name=mRNA_F-distichus_contig96196.19072.1|organism=Fucus distichus monoicous|type=mRNA|length=1546bp|location=Sequence derived from alignment at F-distichus_contig96196:177..1722- (Fucus distichus monoicous)
ATGAAAAACAAACAGGTGGTGCCTTGCTTTCCGCCAGAGTACGAGATCCT CAAAGTGTTTCGAGAATCCTACGAGGGATTCCTGAAGGATCTGCTCCTGC CCGTGGTCTGCGGGGAGGATCGAATGGCCGACTGCGACGTTCGGGACATC CTCGAGGCCATCAAGTGGCTTGAGTACTACAACACCCGAGTAGACAGGCA AGTTTGTTTTAATATACTATTATTAATATGAGAATACAAGGCAGACTTAA CTTGGACCTGTTCTTTTGTTGTCTTGTAGTACAGGAATCGTGCGTTGATT CGGCCGTCGAAGCAATGAAGGTCAGCATCTTGTTTCCCCGCCGACCCCGA AAAAAAACGCCTCCATGAGTGGAACGCATTTCATGTCGATGTTGTTTCTT TTTTTCTTGAGTCTGCGGCGATCGGCTCGTTCTCGCTTCGATTGTGCATC CATCCTGCCTCTGTATTATACAAGTAATAGTGGAGTATTCATTTTTTTTC CCTGCAAAGAACCTCTCGCCTCCATAAATCACAACTCCCGAAGCGCTAAC ACAAATAATCGAAGGGTTGGATGTGTCGCTCTGCAACCATATGCCGCTCT TCTCCGTCCCTCCCTCTCTCCCTTCGTTCGTTCGTTCTTTCACTCATTCA TTTTCATTATTTTATGTATAACAGTCACACATATAGCAAGAGTGTGGATC AACCGGGTAAGGTTGCCAGTCCTGCACGTGGTCCAGCTGAACAGGAAAAA TTCATATTTCCCTGTTCGCGTTCGTGCCTGAGAATTTGGTCTCGCGAAAC GGGTTCGGCAGTTGCGTCCCGCGTCAGCCTGCTCATCTCCATACTCAGGC TGCACCTGGTGCTTACTTACGGGATTCCTCCCGAGTTTCGCAGTGCGTCA CTTATTCACGCGTACATTCATGCATTCTTGTCATTCGTGCTTTTAGGTTA TCCATTCATCCATTCATCCATTCATGCGTTCGTCCATATCAATCACGTGT CAACGATTCATTCAATGTTAGTGTTCACTCGGTTCATTTCATTTACTCTC ATCTACTTTTACCCTTATTTTTGTACAGGTAGACGATAAAGCCGATAGTC TAGAGCAAGAGCAAGAGCAAGAGCGCTTTTGCGATCTCTAAATCGTTTTT TTTTTTCTCTGGCGAGACGATAGCGCGGGTACAGTATTACGAGTACAGGT TGCTTCATTCCATTCCCCTGCCATTTCCCTTTTATTTGTCAGTTATTCCC CGGTCATTCCCCGGTCATTCCTCGGTCATTCCTCGGTCATTCCTCGGTCA TTCCCCGGTCATTCCCCGGTCATTCCCCATTCATCCCCCTATCATCCCCC TGTTATCGGCAGGTGCGAGGAGTTTGCTGAAGCCATCGTGGGGCTGAACG CGGCTTATCTAACCCGAATCAAGGCTCAGATCATGAAGTGGGTCCAGAAC CTCCGTGCCCAACGTTTGGAAGGGCAACTCGATTCCGAGGGACACTACGT GACGACGCTACCAGACGACATGTTCAACCTCATCAATATGCAGGTA
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Coding sequence (CDS) from alignment at F-distichus_contig96196:177..1722-

>mRNA_F-distichus_contig96196.19072.1 ID=mRNA_F-distichus_contig96196.19072.1|Name=mRNA_F-distichus_contig96196.19072.1|organism=Fucus distichus monoicous|type=CDS|length=756bp|location=Sequence derived from alignment at F-distichus_contig96196:177..1722- (Fucus distichus monoicous)
ATGAAAAACAAACAGGTGGTGCCTTGCTTTCCGCCAGAGTACGAGATCCT
CAAAGTGTTTCGAGAATCCTACGAGGGATTCCTGAAGGATCTGCTCCTGC
CCGTGGTCTGCGGGGAGGATCGAATGGCCGACTGCGACGTTCGGGACATC
CTCGAGGCCATCAAGTGGCTTGAGTACTACAACACCCGAGTAGACAGGCA
AATGAAAAACAAACAGGTGGTGCCTTGCTTTCCGCCAGAGTACGAGATCC
TCAAAGTGTTTCGAGAATCCTACGAGGGATTCCTGAAGGATCTGCTCCTG
CCCGTGGTCTGCGGGGAGGATCGAATGGCCGACTGCGACGTTCGGGACAT
CCTCGAGGCCATCAAGTGGCTTGAGTACTACAACACCCGAGTAGACAGGC
AAGAGTTTGCTGAAGCCATCGTGGGGCTGAACGCGGCTTATCTAACCCGA
ATCAAGGCTCAGATCATGAAGTGGGTCCAGAACCTCCGTGCCCAACGTTT
GGAAGGGCAACTCGATTCCGAGGGACACTACGTGACGACGCTACCAGACG
ACATGTTCAACCTCATCAATATGCAGGTAGAGTTTGCTGAAGCCATCGTG
GGGCTGAACGCGGCTTATCTAACCCGAATCAAGGCTCAGATCATGAAGTG
GGTCCAGAACCTCCGTGCCCAACGTTTGGAAGGGCAACTCGATTCCGAGG
GACACTACGTGACGACGCTACCAGACGACATGTTCAACCTCATCAATATG
CAGGTA
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