mRNA_F-distichus_contig96174.19071.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96174.19071.1
Unique NamemRNA_F-distichus_contig96174.19071.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96174.19071.1 vs. uniprot
Match: D7FU20_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU20_ECTSI)

HSP 1 Score: 258 bits (660), Expect = 2.720e-82
Identity = 118/149 (79.19%), Postives = 132/149 (88.59%), Query Frame = 1 
Query:    1 GIPVVGRVEVYLRLLDGSSKRRLRITCPDVERCPPECILLGAGTNEANGTYELTGFRNAAPMYTK-ENGVTIAKKCLGGREGWIIGCPPNRVLYGQPGDTDLPPDLHWSLVNGGTGQNPPPTLMMHSHRLAKEIVIDIRQMPSPRQNWS 444
            GI +VGRVEVYL LLDGSSKRRLR+TCPD+ERCPPECILLGAG NEANGTYEL GFRN AP YT  ++ VTIAK+CLGGREGWIIG PPN VLYGQP +TDLPP+LHW+L+NGGTG NPPPTLMMHSHR AKE ++DIRQMP+PR  W+
Sbjct:  284 GISLVGRVEVYLCLLDGSSKRRLRVTCPDIERCPPECILLGAGANEANGTYELAGFRNGAPFYTNGKDDVTIAKECLGGREGWIIGRPPNYVLYGQPVNTDLPPELHWALMNGGTGLNPPPTLMMHSHRRAKERLVDIRQMPTPRARWA 432
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BLAST of mRNA_F-distichus_contig96174.19071.1 vs. uniprot
Match: A0A6H5KR82_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR82_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 2.750e-76
Identity = 117/149 (78.52%), Postives = 131/149 (87.92%), Query Frame = 1 
Query:    1 GIPVVGRVEVYLRLLDGSSKRRLRITCPDVERCPPECILLGAGTNEANGTYELTGFRNAAPMYTKE-NGVTIAKKCLGGREGWIIGCPPNRVLYGQPGDTDLPPDLHWSLVNGGTGQNPPPTLMMHSHRLAKEIVIDIRQMPSPRQNWS 444
            GI +VGRVEVYL LLDGSSKRRLR+ CPD+ERCPPECILLGAG NEANGTYEL GFRN AP YT + + VTIAK+CLGGREGWIIG PPN VLYGQP +TDLPP+LHW+L+NGGTG NPPPTLMMHSHR AKE ++DIRQMP+PR  W+
Sbjct: 1429 GISLVGRVEVYLCLLDGSSKRRLRVNCPDIERCPPECILLGAGANEANGTYELAGFRNGAPFYTNDKDDVTIAKECLGGREGWIIGRPPNYVLYGQPVNTDLPPELHWALMNGGTGLNPPPTLMMHSHRRAKERLMDIRQMPTPRARWA 1577
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BLAST of mRNA_F-distichus_contig96174.19071.1 vs. uniprot
Match: A0A835YWH6_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YWH6_9STRA)

HSP 1 Score: 150 bits (380), Expect = 3.370e-41
Identity = 74/140 (52.86%), Postives = 96/140 (68.57%), Query Frame = 1 
Query:   16 GRVEVYLRLLDGSSKRRLRITCPDVERCPPECILLGAGTNEANGTYELTGFRNAAPMYTKE-NGVTIAKKCLGGREGWIIGCPPNRVLYGQPGDTDLPPDLHWSLVNGGTGQNPPPTLMMHSHRLAKEIVIDIRQMPSPR 432
            GR+EVYL L DG+ KRRL IT P VE  PP+CI LGAG+  ANGT++LTG+R+ AP YT   +GVTI +  L GR GW++   P++V Y     +  PPDLHW+LV+ G G  PPPTLM    +  KE  +DIR++P+PR
Sbjct:  207 GRMEVYLSLPDGACKRRLAITSPLVETAPPQCIALGAGSAAANGTFDLTGWRHGAPFYTNTASGVTIGRVELEGRAGWVMRKEPHKVYYCCTEASAHPPDLHWTLVSMGDGNEPPPTLMTSYQKRVKERPVDIRELPTPR 346
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96174.19071.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FU20_ECTSI2.720e-8279.19Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KR82_9PHAE2.750e-7678.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YWH6_9STRA3.370e-4152.86Uncharacterized protein (Fragment) n=1 Tax=Tribone... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96174contigF-distichus_contig96174:3..1997 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size444
Cds size444
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96174.19071.1prot_F-distichus_contig96174.19071.1Fucus distichus monoicouspolypeptideF-distichus_contig96174 3..1997 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931139.0939345-CDS-F-distichus_contig96174:2..501622931139.0939345-CDS-F-distichus_contig96174:2..50Fucus distichus monoicousCDSF-distichus_contig96174 3..50 -
1690886174.7459543-CDS-F-distichus_contig96174:2..501690886174.7459543-CDS-F-distichus_contig96174:2..50Fucus distichus monoicousCDSF-distichus_contig96174 3..50 -
1622931139.1076326-CDS-F-distichus_contig96174:794..9861622931139.1076326-CDS-F-distichus_contig96174:794..986Fucus distichus monoicousCDSF-distichus_contig96174 795..986 -
1690886174.7579384-CDS-F-distichus_contig96174:794..9861690886174.7579384-CDS-F-distichus_contig96174:794..986Fucus distichus monoicousCDSF-distichus_contig96174 795..986 -
1622931139.1215525-CDS-F-distichus_contig96174:1519..15851622931139.1215525-CDS-F-distichus_contig96174:1519..1585Fucus distichus monoicousCDSF-distichus_contig96174 1520..1585 -
1690886174.7699285-CDS-F-distichus_contig96174:1519..15851690886174.7699285-CDS-F-distichus_contig96174:1519..1585Fucus distichus monoicousCDSF-distichus_contig96174 1520..1585 -
1622931139.134211-CDS-F-distichus_contig96174:1859..19971622931139.134211-CDS-F-distichus_contig96174:1859..1997Fucus distichus monoicousCDSF-distichus_contig96174 1860..1997 -
1690886174.7843704-CDS-F-distichus_contig96174:1859..19971690886174.7843704-CDS-F-distichus_contig96174:1859..1997Fucus distichus monoicousCDSF-distichus_contig96174 1860..1997 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96174.19071.1

>prot_F-distichus_contig96174.19071.1 ID=prot_F-distichus_contig96174.19071.1|Name=mRNA_F-distichus_contig96174.19071.1|organism=Fucus distichus monoicous|type=polypeptide|length=148bp
GIPVVGRVEVYLRLLDGSSKRRLRITCPDVERCPPECILLGAGTNEANGT
YELTGFRNAAPMYTKENGVTIAKKCLGGREGWIIGCPPNRVLYGQPGDTD
LPPDLHWSLVNGGTGQNPPPTLMMHSHRLAKEIVIDIRQMPSPRQNWS
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mRNA from alignment at F-distichus_contig96174:3..1997-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96174.19071.1 ID=mRNA_F-distichus_contig96174.19071.1|Name=mRNA_F-distichus_contig96174.19071.1|organism=Fucus distichus monoicous|type=mRNA|length=1995bp|location=Sequence derived from alignment at F-distichus_contig96174:3..1997- (Fucus distichus monoicous)
GGAATACCTGTCGTTGGGAGGGTGGAGGTGTACCTACGGCTGCTGGACGG
ATCGAGCAAGCGACGGCTTCGGATCACGTGTCCCGACGTGGAACGTTGCC
CGCCGGAATGCATCCTGCTTGGAGCGGGAACCAACGAGGTGGGGAGAAAG
TTCGGCGTCGAACAGCATGCGTCCGCTCTTGGTTGTGTGTAAGATGGCGT
GGTTGACGAGGGGGGGGAGGCAGGGGTCTTTCAGTTTGTTTGTTTTTGTA
TGGACACATGCCATGCCATGTCCTCCTCAGGCGTTTTTGGTGTGGATGGA
GGGGGGGGGGGAGTGTGAGCACCATATCTTAAGTAGACTCTCATTTTAGT
AAGTAACGGCCTTGGATGTCTCCGCTCTCCCGTTACGATCCACGATGCCT
TCCTTCACCCAGGCAAACGGCACGTACGAACTGACGGGGTTCCGGAACGC
TGCACCGATGTACACTAAGGAGAATGGGGTGAGTATTGATGGTGTATCAA
CATATTAATGGTAGCTCTTGAGTTTATAGTCTATATACATTATTGTACTG
GAAATGGGATTGTTGGCGGCGGGGTGATGACGGATGTAGGTAATAAAAGG
CGTTTTGCGGTAAGGGAAAACGTCCTCTAAACAGGCGGAGACGGTGTCGT
TGTTGGTGCTTTTTAGTTTAGTTTTTGGTGCAACGCGCTCTCGCCTAATT
TCGACTGTGAAATACGAACATCTTTGTCGCGTTATCTAAGAAAACATGGA
AAAATAAAATAAAAAATGTCACGCAAACATTGATCAAAGGGAACGAAAAC
TCGGCCGTTATATATTATATCTCGCGATGCGCTTCAAACGGCTCGAGACG
ATATGATACGATATGATACGATATGCTGTGCGATAAGCGCCCGTGAATCG
TTCAGGTTTGCACAAGGAGGATCGCTTACCCGGCCCGGCGCAATGCGCCA
CTGTTTATTTTTATTTTTATTTTTTAACTTCCATGCATGATTTCATTTCG
GCGTTCCTCAGGTTACGATAGCCAAAAAGTGTCTGGGCGGGAGAGAGGGG
TGGATCATCGGATGCCCGCCGAACCGCGTGCTGTACGGGCAGCCAGGAGA
TACCGACCTGCCCCCGGATCTCCACTGGTCGCTCGTGAACGGCGGCACGG
GGCAGAATCCCCCGCCCACCCTCATGATGCACAGCCATCGCCTCGCCAAG
GAGGTAAGAGAGAGAGAAGAGCGATAAGTGAGAGATATACGAGAGAGATT
GGCGCCTATTTTTCAAAAACGTCTTGTTTGTTTCCAAGCCTACCTACTGA
CGGCCTGCGAAAAGTATATATATATATATATATATGTTACACACTAGAAC
TGAATGATGGACCTTAGCTAACAATCTGGGCTGTTTCCCTCTTAAACATT
CAAACTCTGTCTGCCCCATGTATAAAAGTTGTATTCGGAGTTTGCATAAG
CTTGAACACATCGCGATGATGAATGGAAGTTTGCTGGAGTCAGAGGAGTC
AATGGAGTCAAGCGTGGTTCATCCTGACCTGACCTGACCTGACCGGTGTA
TACAGTATAGTATACTGTATACTTTATATCTCTCTGCACCACGGGTGGGG
TTAGGGTGGTTCTGTTAATATAGTACCGGTATATTTTGTTTTTGTCTTCC
AAACCTACCAGTACCCATTTATTTATTTTTACGTTTGGTGCTCCGAAAAG
ACGCTCGATACGTCTTTGCTACCGCTCGAGACGTCATGAAAATACTGCAG
AAATATATAAACTGTATAGTCTAGAGCGCTCACTAAACACCCGCCTCCGA
AAAAACAATTAGTGTAAACATAAAGTTTTCGTATGGGCATAACGCTGTTT
TATTGGGGGGGGGGCATATTTTTCACCCCTCTGACTCAGCATTGAATCAT
TGAATCATTTTACTGGCTCACTTTCTTGCGCGCGTTTCCTTTCGCAGATT
GTAATCGATATTCGACAGATGCCTTCGCCTCGCCAGAACTGGTCC
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Coding sequence (CDS) from alignment at F-distichus_contig96174:3..1997-

>mRNA_F-distichus_contig96174.19071.1 ID=mRNA_F-distichus_contig96174.19071.1|Name=mRNA_F-distichus_contig96174.19071.1|organism=Fucus distichus monoicous|type=CDS|length=888bp|location=Sequence derived from alignment at F-distichus_contig96174:3..1997- (Fucus distichus monoicous)
GGAATACCTGTCGTTGGGAGGGTGGAGGTGTACCTACGGCTGCTGGACGG
ATCGAGCAAGCGACGGCTTCGGATCACGTGTCCCGACGTGGAACGTTGCC
CGCCGGAATGCATCCTGCTTGGAGCGGGAACCAACGAGGGAATACCTGTC
GTTGGGAGGGTGGAGGTGTACCTACGGCTGCTGGACGGATCGAGCAAGCG
ACGGCTTCGGATCACGTGTCCCGACGTGGAACGTTGCCCGCCGGAATGCA
TCCTGCTTGGAGCGGGAACCAACGAGGCAAACGGCACGTACGAACTGACG
GGGTTCCGGAACGCTGCACCGATGTACACTAAGGAGAATGGGGCAAACGG
CACGTACGAACTGACGGGGTTCCGGAACGCTGCACCGATGTACACTAAGG
AGAATGGGGTTACGATAGCCAAAAAGTGTCTGGGCGGGAGAGAGGGGTGG
ATCATCGGATGCCCGCCGAACCGCGTGCTGTACGGGCAGCCAGGAGATAC
CGACCTGCCCCCGGATCTCCACTGGTCGCTCGTGAACGGCGGCACGGGGC
AGAATCCCCCGCCCACCCTCATGATGCACAGCCATCGCCTCGCCAAGGAG
GTTACGATAGCCAAAAAGTGTCTGGGCGGGAGAGAGGGGTGGATCATCGG
ATGCCCGCCGAACCGCGTGCTGTACGGGCAGCCAGGAGATACCGACCTGC
CCCCGGATCTCCACTGGTCGCTCGTGAACGGCGGCACGGGGCAGAATCCC
CCGCCCACCCTCATGATGCACAGCCATCGCCTCGCCAAGGAGATTGTAAT
CGATATTCGACAGATGCCTTCGCCTCGCCAGAACTGGTCCATTGTAATCG
ATATTCGACAGATGCCTTCGCCTCGCCAGAACTGGTCC
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