mRNA_F-distichus_contig96138.19068.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96138.19068.1
Unique NamemRNA_F-distichus_contig96138.19068.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig96138.19068.1 vs. uniprot
Match: D7FZG0_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZG0_ECTSI)

HSP 1 Score: 100 bits (250), Expect = 4.210e-23
Identity = 41/46 (89.13%), Postives = 44/46 (95.65%), Query Frame = 1 
Query:   97 RIFFKYYKVNLEKECPFWEDDGQCMMRDCSVCECNQEEIPKPWLEE 234
            R FFKY+KVNLEKECPFWE+DGQCMMRDCSVCEC+ EEIPKPWLEE
Sbjct:  103 RNFFKYFKVNLEKECPFWEEDGQCMMRDCSVCECSPEEIPKPWLEE 148
[Close]
BLAST of mRNA_F-distichus_contig96138.19068.1 vs. uniprot
Match: A0A835YS22_9STRA (Putative endoplasmic oxidoreductin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS22_9STRA)

HSP 1 Score: 85.5 bits (210), Expect = 1.270e-17
Identity = 33/44 (75.00%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  103 FFKYYKVNLEKECPFWEDDGQCMMRDCSVCECNQEEIPKPWLEE 234
            FFKY+KV+L K CPFW++DGQCM RDCSVCEC+ +EIPK WLEE
Sbjct:   80 FFKYFKVDLNKPCPFWQEDGQCMYRDCSVCECDPKEIPKKWLEE 123
[Close]
BLAST of mRNA_F-distichus_contig96138.19068.1 vs. uniprot
Match: A0A7S1XNL3_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNL3_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.350e-17
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  103 FFKYYKVNLEKECPFWEDDGQCMMRDCSVCECNQEEIPKPWLEE 234
            FFKY++VNLEK CPFWEDDG C++RDCSVCEC  +E+PK WLE+
Sbjct:  145 FFKYFRVNLEKGCPFWEDDGLCVLRDCSVCECEPKEVPKRWLEQ 188
[Close]
BLAST of mRNA_F-distichus_contig96138.19068.1 vs. uniprot
Match: A0A7S1TVZ6_9STRA (Hypothetical protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TVZ6_9STRA)

HSP 1 Score: 85.1 bits (209), Expect = 1.750e-17
Identity = 32/44 (72.73%), Postives = 39/44 (88.64%), Query Frame = 1 
Query:  103 FFKYYKVNLEKECPFWEDDGQCMMRDCSVCECNQEEIPKPWLEE 234
            FFKY++VNLEK CPFWEDDG C++RDCSVCEC  +E+PK WLE+
Sbjct:  145 FFKYFRVNLEKGCPFWEDDGLCVLRDCSVCECEPKEVPKRWLEQ 188
[Close]
BLAST of mRNA_F-distichus_contig96138.19068.1 vs. uniprot
Match: A0A8K1C292_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C292_PYTOL)

HSP 1 Score: 79.0 bits (193), Expect = 2.520e-15
Identity = 30/45 (66.67%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:   91 SPRIFFKYYKVNLEKECPFWEDDGQCMMRDCSVCECNQEEIPKPW 225
            S   FF+Y+KV+L KECP+W+DDG C  RDC+VCEC QEEIPK W
Sbjct:   95 SKLTFFRYFKVDLGKECPYWQDDGMCASRDCAVCECPQEEIPKTW 139
[Close]
BLAST of mRNA_F-distichus_contig96138.19068.1 vs. uniprot
Match: A0A7S3H466_9STRA (Hypothetical protein n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H466_9STRA)

HSP 1 Score: 77.4 bits (189), Expect = 9.000e-15
Identity = 31/54 (57.41%), Postives = 41/54 (75.93%), Query Frame = 1 
Query:   70 PTTHTLQSPRIFFKYYKVNLEKECPFWEDDGQCMMRDCSVCECNQEEIPKPWLE 231
            P  +TL + + FF+Y+KV+LE  CP+W   GQCMM  CSVC C+++EIPKPWLE
Sbjct:   61 PILNTLTT-KTFFRYFKVDLESPCPYWPTVGQCMMEGCSVCTCDEDEIPKPWLE 113
[Close]
BLAST of mRNA_F-distichus_contig96138.19068.1 vs. uniprot
Match: A0A7R9U445_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U445_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 1.660e-14
Identity = 31/53 (58.49%), Postives = 39/53 (73.58%), Query Frame = 1 
Query:   76 THTLQSPRIFFKYYKVNLEKECPFWEDDGQCMMRDCSVCECNQEEIPKPWLEE 234
            THT      FFKY++VNLEK C FWE+DG C +RDCSVCEC+ EE+P  W ++
Sbjct:   86 THT-----TFFKYFRVNLEKGCQFWEEDGMCSVRDCSVCECDPEEVPPVWQQQ 133
[Close]
BLAST of mRNA_F-distichus_contig96138.19068.1 vs. uniprot
Match: E1ZQ09_CHLVA (Uncharacterized protein (Fragment) n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1ZQ09_CHLVA)

HSP 1 Score: 75.1 bits (183), Expect = 5.400e-14
Identity = 26/41 (63.41%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  103 FFKYYKVNLEKECPFWEDDGQCMMRDCSVCECNQEEIPKPW 225
            FF+Y+KV+L  ECP W DDG C +RDCSVCEC ++E+P+PW
Sbjct:   26 FFRYFKVDLYCECPLWPDDGMCSLRDCSVCECEEQEVPEPW 66
[Close]
BLAST of mRNA_F-distichus_contig96138.19068.1 vs. uniprot
Match: A0A087SC64_AUXPR (Endoplasmic oxidoreductin-1 n=4 Tax=Auxenochlorella protothecoides TaxID=3075 RepID=A0A087SC64_AUXPR)

HSP 1 Score: 75.1 bits (183), Expect = 5.510e-14
Identity = 27/41 (65.85%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:  103 FFKYYKVNLEKECPFWEDDGQCMMRDCSVCECNQEEIPKPW 225
            FF+Y+KV+L  +CPFW DDG C MRDCSVCEC ++E+PK W
Sbjct:   66 FFRYFKVDLYCDCPFWPDDGMCAMRDCSVCECEEDEVPKIW 106
[Close]
BLAST of mRNA_F-distichus_contig96138.19068.1 vs. uniprot
Match: M2X4W4_GALSU (ERO1-like protein beta n=1 Tax=Galdieria sulphuraria TaxID=130081 RepID=M2X4W4_GALSU)

HSP 1 Score: 75.1 bits (183), Expect = 5.660e-14
Identity = 27/43 (62.79%), Postives = 35/43 (81.40%), Query Frame = 1 
Query:   97 RIFFKYYKVNLEKECPFWEDDGQCMMRDCSVCECNQEEIPKPW 225
            R FF+ +KV+L KECPFW DDGQC +RDCSVC C+++E+P  W
Sbjct:   89 RTFFRIFKVDLSKECPFWPDDGQCALRDCSVCACSEDEVPVLW 131
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96138.19068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZG0_ECTSI4.210e-2389.13Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YS22_9STRA1.270e-1775.00Putative endoplasmic oxidoreductin n=1 Tax=Tribone... [more]
A0A7S1XNL3_9STRA1.350e-1772.73Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A7S1TVZ6_9STRA1.750e-1772.73Hypothetical protein n=2 Tax=Phaeomonas parva TaxI... [more]
A0A8K1C292_PYTOL2.520e-1566.67Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7S3H466_9STRA9.000e-1557.41Hypothetical protein n=2 Tax=Spumella elongata Tax... [more]
A0A7R9U445_9STRA1.660e-1458.49Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
E1ZQ09_CHLVA5.400e-1463.41Uncharacterized protein (Fragment) n=1 Tax=Chlorel... [more]
A0A087SC64_AUXPR5.510e-1465.85Endoplasmic oxidoreductin-1 n=4 Tax=Auxenochlorell... [more]
M2X4W4_GALSU5.660e-1462.79ERO1-like protein beta n=1 Tax=Galdieria sulphurar... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96138contigF-distichus_contig96138:214..459 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score100.9
Seed ortholog evalue2.9e-19
Seed eggNOG ortholog2880.D7FZG0
Preferred nameERO1LB
KEGG koko:K10950,ko:K10976
KEGG Pathwayko04141,ko05110,map04141,map05110
Hectar predicted targeting categoryother localisation
GOsGO:0001666,GO:0003674,GO:0003756,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005783,GO:0005788,GO:0005789,GO:0006082,GO:0006457,GO:0006458,GO:0006464,GO:0006508,GO:0006518,GO:0006520,GO:0006575,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006816,GO:0006873,GO:0006874,GO:0006875,GO:0006915,GO:0006950,GO:0006979,GO:0006986,GO:0007154,GO:0007165,GO:0007204,GO:0007275,GO:0007568,GO:0008150,GO:0008152,GO:0008219,GO:0008593,GO:0009266,GO:0009628,GO:0009966,GO:0009987,GO:0010033,GO:0010260,GO:0010467,GO:0010646,GO:0010817,GO:0012501,GO:0012505,GO:0015035,GO:0015036,GO:0016020,GO:0016021,GO:0016043,GO:0016485,GO:0016486,GO:0016491,GO:0016667,GO:0016670,GO:0016853,GO:0016860,GO:0016864,GO:0016972,GO:0019471,GO:0019538,GO:0019725,GO:0019752,GO:0022417,GO:0023051,GO:0023052,GO:0030001,GO:0030003,GO:0030070,GO:0030154,GO:0030176,GO:0030198,GO:0030425,GO:0030968,GO:0031224,GO:0031227,GO:0031974,GO:0031984,GO:0032501,GO:0032502,GO:0032879,GO:0033500,GO:0033554,GO:0034220,GO:0034599,GO:0034620,GO:0034641,GO:0034975,GO:0034976,GO:0035556,GO:0035966,GO:0035967,GO:0036211,GO:0036293,GO:0036294,GO:0036477,GO:0042175,GO:0042221,GO:0042445,GO:0042592,GO:0042593,GO:0042995,GO:0043005,GO:0043062,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043436,GO:0043603,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044281,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044444,GO:0044446,GO:0044463,GO:0044464,GO:0045444,GO:0045454,GO:0048513,GO:0048519,GO:0048523,GO:0048583,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050789,GO:0050794,GO:0050801,GO:0050873,GO:0050896,GO:0051082,GO:0051084,GO:0051085,GO:0051179,GO:0051209,GO:0051234,GO:0051282,GO:0051283,GO:0051480,GO:0051604,GO:0051641,GO:0051649,GO:0051716,GO:0055065,GO:0055074,GO:0055080,GO:0055082,GO:0055085,GO:0055114,GO:0060401,GO:0060402,GO:0061077,GO:0065007,GO:0065008,GO:0070013,GO:0070059,GO:0070482,GO:0070588,GO:0070838,GO:0070887,GO:0071310,GO:0071453,GO:0071456,GO:0071704,GO:0071840,GO:0072503,GO:0072507,GO:0072511,GO:0097190,GO:0097193,GO:0097447,GO:0097458,GO:0097553,GO:0098655,GO:0098660,GO:0098662,GO:0098771,GO:0098827,GO:0120025,GO:0120038,GO:0140096,GO:1901142,GO:1901564,GO:1901605
EggNOG free text desc.protein folding in endoplasmic reticulum
EggNOG OGsCOG5061@1,KOG2608@2759
COG Functional cat.OU
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Exons1
Model size246
Cds size246
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.8929238-CDS-F-distichus_contig96138:213..4591622931138.8929238-CDS-F-distichus_contig96138:213..459Fucus distichus monoicousCDSF-distichus_contig96138 214..459 +
1690886174.6578581-CDS-F-distichus_contig96138:213..4591690886174.6578581-CDS-F-distichus_contig96138:213..459Fucus distichus monoicousCDSF-distichus_contig96138 214..459 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96138.19068.1prot_F-distichus_contig96138.19068.1Fucus distichus monoicouspolypeptideF-distichus_contig96138 214..459 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96138.19068.1

>prot_F-distichus_contig96138.19068.1 ID=prot_F-distichus_contig96138.19068.1|Name=mRNA_F-distichus_contig96138.19068.1|organism=Fucus distichus monoicous|type=polypeptide|length=82bp
SEAFCAYDSPLRHTHIPRSCATYPTTHTLQSPRIFFKYYKVNLEKECPFW
EDDGQCMMRDCSVCECNQEEIPKPWLEEVRE*
back to top

mRNA from alignment at F-distichus_contig96138:214..459+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96138.19068.1 ID=mRNA_F-distichus_contig96138.19068.1|Name=mRNA_F-distichus_contig96138.19068.1|organism=Fucus distichus monoicous|type=mRNA|length=246bp|location=Sequence derived from alignment at F-distichus_contig96138:214..459+ (Fucus distichus monoicous)
TCGGAAGCTTTCTGTGCGTACGACAGCCCCCTCCGACACACGCACATTCC
GCGTTCGTGTGCAACTTACCCAACCACCCACACTCTTCAATCCCCCAGGA
TCTTCTTCAAGTACTACAAAGTGAACCTGGAAAAGGAGTGCCCCTTTTGG
GAAGACGATGGACAGTGCATGATGCGCGACTGTAGCGTGTGCGAGTGCAA
CCAGGAGGAAATCCCCAAGCCGTGGCTCGAAGAGGTGAGAGAGTGA
back to top

Coding sequence (CDS) from alignment at F-distichus_contig96138:214..459+

>mRNA_F-distichus_contig96138.19068.1 ID=mRNA_F-distichus_contig96138.19068.1|Name=mRNA_F-distichus_contig96138.19068.1|organism=Fucus distichus monoicous|type=CDS|length=492bp|location=Sequence derived from alignment at F-distichus_contig96138:214..459+ (Fucus distichus monoicous)
TCGGAAGCTTTCTGTGCGTACGACAGCCCCCTCCGACACACGCACATTCC
GCGTTCGTGTGCAACTTACCCAACCACCCACACTCTTCAATCCCCCAGGA
TCTTCTTCAAGTACTACAAAGTGAACCTGGAAAAGGAGTGCCCCTTTTGG
GAAGACGATGGACAGTGCATGATGCGCGACTGTAGCGTGTGCGAGTGCAA
CCAGGAGGAAATCCCCAAGCCGTGGCTCGAAGAGGTGAGAGAGTGATCGG
AAGCTTTCTGTGCGTACGACAGCCCCCTCCGACACACGCACATTCCGCGT
TCGTGTGCAACTTACCCAACCACCCACACTCTTCAATCCCCCAGGATCTT
CTTCAAGTACTACAAAGTGAACCTGGAAAAGGAGTGCCCCTTTTGGGAAG
ACGATGGACAGTGCATGATGCGCGACTGTAGCGTGTGCGAGTGCAACCAG
GAGGAAATCCCCAAGCCGTGGCTCGAAGAGGTGAGAGAGTGA
back to top