mRNA_F-distichus_contig96134.19067.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96134.19067.1
Unique NamemRNA_F-distichus_contig96134.19067.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96134.19067.1 vs. uniprot
Match: A0A6H5KCT0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCT0_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 8.550e-30
Identity = 91/233 (39.06%), Postives = 110/233 (47.21%), Query Frame = 1 
Query:    1 IEPQLCWSASGNELRVHTTESLSSHVGHGTGGLPTLAMFHFFSKP------------------------------------------------------AAKSFESIPGTD-TARETVRQTPPPWMHSLFSY--PRAHGGDRPSLETTNHLTSPGSSSAPVGRG--------KLTIRAVSGTKMPDGRTVLVCLVSEHGLASEVHCLDPISGETLHIAAGLPMMLTSLAVLPR 504
            I P+LCWSA GNELRVH+T  L  H GH T GLP  A+F F S+P                                                      AA    S PGT  + ++    +P P    L S   P   GG R    T + +   GS S P  RG        KL++RAV   ++ DGRTVLVCL SE  L SEVHC+DP SGETLH+A GLP++LTSLAV+PR
Sbjct:   11 ISPELCWSAHGNELRVHSTARLEPHAGHKTTGLPVQALFRFLSEPERERERGPVRGTVLLPQNKRAKPLQPQNLALGSGAMGQSVCVTDSTSVITSTTGAATRIASKPGTTGSPKDAADISPQPGNGQLVSAGSPPVGGGSRRGSPTFSRV---GSGSFPRKRGGASRNAAGKLSVRAVEAFELRDGRTVLVCLASERELPSEVHCVDPFSGETLHVATGLPILLTSLAVVPR 240
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BLAST of mRNA_F-distichus_contig96134.19067.1 vs. uniprot
Match: D7FN13_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN13_ECTSI)

HSP 1 Score: 127 bits (318), Expect = 2.230e-28
Identity = 90/233 (38.63%), Postives = 109/233 (46.78%), Query Frame = 1 
Query:    1 IEPQLCWSASGNELRVHTTESLSSHVGHGTGGLPTLAMFHFFS-----------------------KP-------------------------------AAKSFESIPGT-DTARETVRQTPPPW--MHSLFSYPRAHGGDRPSLETTNHLTSPGSSSAPVGRG--------KLTIRAVSGTKMPDGRTVLVCLVSEHGLASEVHCLDPISGETLHIAAGLPMMLTSLAVLPR 504
            I P+LCWSA  NELRVH+T  L  H GH T GLP  A+F F S                       KP                               AA    S PGT D+ ++    +P P     +    P A GG R    T + +   GS   P  RG        KL++RAV   ++ DGRTVLVCL SE  L SEVHC+DP SGETLH+A GLP++LTSLAV+PR
Sbjct:   11 ISPELCWSAHENELRVHSTARLEPHAGHKTTGLPVQALFRFLSEQERERERGPVRGTVQPLSNKRAKPLQPQTLALGSGAIGQSVCVTDSRSVIRGTTGAATRIPSKPGTPDSPKDVAGISPQPGNGQRAATGSPPAGGGSRRGSPTFSRV---GSGGFPTKRGGTSRNAAGKLSVRAVEAFELRDGRTVLVCLASERELHSEVHCVDPFSGETLHVATGLPILLTSLAVVPR 240
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96134.19067.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KCT0_9PHAE8.550e-3039.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FN13_ECTSI2.230e-2838.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96134contigF-distichus_contig96134:32..1877 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1072
Cds size615
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96134.19067.1prot_F-distichus_contig96134.19067.1Fucus distichus monoicouspolypeptideF-distichus_contig96134 143..1531 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.7558222-UTR-F-distichus_contig96134:31..1421622931138.7558222-UTR-F-distichus_contig96134:31..142Fucus distichus monoicousUTRF-distichus_contig96134 32..142 +
1690886174.5591788-UTR-F-distichus_contig96134:31..1421690886174.5591788-UTR-F-distichus_contig96134:31..142Fucus distichus monoicousUTRF-distichus_contig96134 32..142 +
1622931138.833938-UTR-F-distichus_contig96134:1531..18771622931138.833938-UTR-F-distichus_contig96134:1531..1877Fucus distichus monoicousUTRF-distichus_contig96134 1532..1877 +
1690886174.6097436-UTR-F-distichus_contig96134:1531..18771690886174.6097436-UTR-F-distichus_contig96134:1531..1877Fucus distichus monoicousUTRF-distichus_contig96134 1532..1877 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.7778997-CDS-F-distichus_contig96134:142..4451622931138.7778997-CDS-F-distichus_contig96134:142..445Fucus distichus monoicousCDSF-distichus_contig96134 143..445 +
1690886174.5715985-CDS-F-distichus_contig96134:142..4451690886174.5715985-CDS-F-distichus_contig96134:142..445Fucus distichus monoicousCDSF-distichus_contig96134 143..445 +
1622931138.7924836-CDS-F-distichus_contig96134:773..10841622931138.7924836-CDS-F-distichus_contig96134:773..1084Fucus distichus monoicousCDSF-distichus_contig96134 774..1084 +
1690886174.581398-CDS-F-distichus_contig96134:773..10841690886174.581398-CDS-F-distichus_contig96134:773..1084Fucus distichus monoicousCDSF-distichus_contig96134 774..1084 +
1622931138.8142412-CDS-F-distichus_contig96134:1530..15311622931138.8142412-CDS-F-distichus_contig96134:1530..1531Fucus distichus monoicousCDSF-distichus_contig96134 1531..1531 +
1690886174.5956542-CDS-F-distichus_contig96134:1530..15311690886174.5956542-CDS-F-distichus_contig96134:1530..1531Fucus distichus monoicousCDSF-distichus_contig96134 1531..1531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96134.19067.1

>prot_F-distichus_contig96134.19067.1 ID=prot_F-distichus_contig96134.19067.1|Name=mRNA_F-distichus_contig96134.19067.1|organism=Fucus distichus monoicous|type=polypeptide|length=205bp
MFHFFSKPAAKSFESIPGTDTARETVRQTPPPWMHSLFSYPRAHGGDRPS
LETTNHLTSPGSSSAPVGRGKLTIRAVSGTKMPDGRTVLVCLVSEHGLAS
EVHCLDPISGETLHIAAGLPMMLTSLAVLPRRFAALPLSTELGCMMTGRL
ERVGSQHDSGPAAGAVEDMDVDCSDEVVVVVGGLGGRVRLVSMRVSYDEG
QKQA*
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mRNA from alignment at F-distichus_contig96134:32..1877+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96134.19067.1 ID=mRNA_F-distichus_contig96134.19067.1|Name=mRNA_F-distichus_contig96134.19067.1|organism=Fucus distichus monoicous|type=mRNA|length=1846bp|location=Sequence derived from alignment at F-distichus_contig96134:32..1877+ (Fucus distichus monoicous)
ATTGAACCGCAGTTATGCTGGTCGGCGTCCGGAAACGAGCTCCGAGTCCA
CACCACGGAGAGCCTGTCGTCCCATGTGGGTCACGGAACGGGCGGCCTGC
CTACCCTGGCGATGTTTCATTTTTTTTCGAAGCCGGCAGCCAAGTCGTTC
GAATCCATCCCCGGCACTGACACTGCCCGGGAAACAGTTCGTCAAACTCC
GCCGCCATGGATGCACAGCCTCTTTTCATATCCTCGGGCACACGGCGGTG
ATAGGCCTTCGTTGGAGACGACGAACCACCTTACCAGCCCTGGCTCGTCG
AGCGCTCCCGTCGGGCGAGGAAAGCTCACGATTCGAGCCGTGTCGGGCAC
GAAAATGCCAGACGGTCGGACAGTCCTGGTCTGCCTGGTTTCTGAGCACG
GTCTGGCGTCGGAGGTACGCGGGTTCGGTGTAGGTTGATACGCTTGAGAG
ACGAAATTGAAGGCATTCACCCCCTCCCCCCTCCCCCCTCCCTTCCCTTC
TCTCGAACAAAATGTACAGCAATCGAGATTGGGCATGTTGGGTGCGGTCC
GCGCTACTCCCTTTTGATTGCCATTCGATAACCGCTAGGATACTATCAAT
AGCTACTACCCTGTTGTCGAGTCGAGGCATCGACTGCAACCTAATGCCAA
GGCTGGGTCGATTCGTCCCGGAGCTACAGTATATGTGTATTATAGCGAAC
CGTCGTCACCTTGCCTGCTTTTTTTTACATCTCGTGTTGCAGGTACACTG
CCTCGATCCTATATCTGGAGAGACTCTTCACATCGCCGCGGGTCTCCCCA
TGATGCTCACAAGCCTCGCCGTCCTGCCCCGCCGCTTTGCGGCGCTACCT
TTGAGCACGGAGCTCGGTTGTATGATGACGGGGCGCTTGGAACGAGTGGG
TAGTCAACACGACTCGGGACCGGCCGCCGGCGCGGTCGAAGATATGGACG
TCGACTGCAGCGACGAAGTTGTTGTGGTCGTCGGGGGCCTCGGGGGTCGA
GTACGACTCGTCAGCATGCGTGTGAGTTATGACGAAGGACAGAAACAAGC
ATAGTTTTGTTTATTGTCCTGAACTTCAGTGCGATGTTTAGCAAGCAGTG
TCTATTTTACTCGATATGATTTAATTCAAACGCCCGCGGCTGTTCTCTTT
CGCCGTACGGCATCAGTTGCAGCGTATCCTATCTATGAGAGCTATTTTTA
CACGTGATGTCGAGGGTTTGGGACTAATACAAGCGCGTTCGCTCCAGAGC
GTTGCGGATGGGGATCGTTTGCAGATGACACTTTCACGTTTTCCCTGGGA
AGCACCGGTACAACAGACAATGCTGCTGTTGCCATTTTGCGTCATGTACG
GAGTTCCCCCAAGTTCGATGGCGTCTTACCCCTTTTCGCCCTTTTTGGAG
GTCCAAAGGTAGTCCACCCGTAGTAGTCGATTGGAGTAACTCCAGCCTTA
CAGATCTTTCCGTACCCTCCCATATTGGCGCGACCGTAGATCGATAGAGA
CAACAGCTGCTCGAACCGACCGGGAGAGAGAGCTCGCCGGTTCATCGCCC
GGCAGCCGCGTTTACCCGGCAATCTTCCATCCGAGCGCGAGGGTATCCCA
GTGTCCGCACTGGAGGCCTTCATGGTTCGCGGGGACGGGGCCCACCTCAC
CATCATGGTGGCGGTGGGGTGGATAGACGGGCACTGGGCGGTTTCTCGTT
GCTACGAATACGTGCCTGGCCGCGCCGCCCCCGGACGTGACGATCCGGTG
GATCATGGGGGTGGCTGGATGGAGGCATTTCCCTCCGTAAATCTAGCGGC
GGGATTCACTTCCGACATCGGACCCCCCTTACACTTTGTGTATCAG
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Coding sequence (CDS) from alignment at F-distichus_contig96134:32..1877+

>mRNA_F-distichus_contig96134.19067.1 ID=mRNA_F-distichus_contig96134.19067.1|Name=mRNA_F-distichus_contig96134.19067.1|organism=Fucus distichus monoicous|type=CDS|length=1230bp|location=Sequence derived from alignment at F-distichus_contig96134:32..1877+ (Fucus distichus monoicous)
ATGTTTCATTTTTTTTCGAAGCCGGCAGCCAAGTCGTTCGAATCCATCCC
CGGCACTGACACTGCCCGGGAAACAGTTCGTCAAACTCCGCCGCCATGGA
TGCACAGCCTCTTTTCATATCCTCGGGCACACGGCGGTGATAGGCCTTCG
TTGGAGACGACGAACCACCTTACCAGCCCTGGCTCGTCGAGCGCTCCCGT
CGGGCGAGGAAAGCTCACGATTCGAGCCGTGTCGGGCACGAAAATGCCAG
ACGGTCGGACAGTCCTGGTCTGCCTGGTTTCTGAGCACGGTCTGGCGTCG
GAGATGTTTCATTTTTTTTCGAAGCCGGCAGCCAAGTCGTTCGAATCCAT
CCCCGGCACTGACACTGCCCGGGAAACAGTTCGTCAAACTCCGCCGCCAT
GGATGCACAGCCTCTTTTCATATCCTCGGGCACACGGCGGTGATAGGCCT
TCGTTGGAGACGACGAACCACCTTACCAGCCCTGGCTCGTCGAGCGCTCC
CGTCGGGCGAGGAAAGCTCACGATTCGAGCCGTGTCGGGCACGAAAATGC
CAGACGGTCGGACAGTCCTGGTCTGCCTGGTTTCTGAGCACGGTCTGGCG
TCGGAGGTACACTGCCTCGATCCTATATCTGGAGAGACTCTTCACATCGC
CGCGGGTCTCCCCATGATGCTCACAAGCCTCGCCGTCCTGCCCCGCCGCT
TTGCGGCGCTACCTTTGAGCACGGAGCTCGGTTGTATGATGACGGGGCGC
TTGGAACGAGTGGGTAGTCAACACGACTCGGGACCGGCCGCCGGCGCGGT
CGAAGATATGGACGTCGACTGCAGCGACGAAGTTGTTGTGGTCGTCGGGG
GCCTCGGGGGTCGAGTACGACTCGTCAGCATGCGTGTGAGTTATGACGAA
GGACAGAAACAAGCATAGTACACTGCCTCGATCCTATATCTGGAGAGACT
CTTCACATCGCCGCGGGTCTCCCCATGATGCTCACAAGCCTCGCCGTCCT
GCCCCGCCGCTTTGCGGCGCTACCTTTGAGCACGGAGCTCGGTTGTATGA
TGACGGGGCGCTTGGAACGAGTGGGTAGTCAACACGACTCGGGACCGGCC
GCCGGCGCGGTCGAAGATATGGACGTCGACTGCAGCGACGAAGTTGTTGT
GGTCGTCGGGGGCCTCGGGGGTCGAGTACGACTCGTCAGCATGCGTGTGA
GTTATGACGAAGGACAGAAACAAGCATAAA
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