mRNA_F-distichus_contig9611.19066.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9611.19066.1
Unique NamemRNA_F-distichus_contig9611.19066.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9611.19066.1 vs. uniprot
Match: A0A6H5KCV8_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KCV8_9PHAE)

HSP 1 Score: 55.8 bits (133), Expect = 2.980e-8
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 IKSQRAPLSRCWTFIDRTIRPICPQMYNLKMYYNSWKRKHARKYQ 135
            I  + APL+RCW FID TIR I     N +++YN WKRKHA KYQ
Sbjct:    6 IYEKGAPLTRCWGFIDGTIRAISRPKRNQRLWYNGWKRKHALKYQ 50
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BLAST of mRNA_F-distichus_contig9611.19066.1 vs. uniprot
Match: A0A6H5JK13_9PHAE (DDE Tnp4 domain-containing protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK13_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 3.980e-8
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 IKSQRAPLSRCWTFIDRTIRPICPQMYNLKMYYNSWKRKHARKYQ 135
            I  + APL+RCW FID TIR I     N +++YN WKRKHA KYQ
Sbjct:   92 IHEKGAPLTRCWGFIDGTIRAISRPKRNQRLWYNGWKRKHALKYQ 136
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BLAST of mRNA_F-distichus_contig9611.19066.1 vs. uniprot
Match: A0A6H5KND8_9PHAE (DDE Tnp4 domain-containing protein n=3 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KND8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 4.470e-8
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 IKSQRAPLSRCWTFIDRTIRPICPQMYNLKMYYNSWKRKHARKYQ 135
            I  + APL+RCW FID TIR I     N +++YN WKRKHA KYQ
Sbjct:   93 IHEKGAPLTRCWGFIDGTIRAISRPKRNQRLWYNGWKRKHALKYQ 137
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BLAST of mRNA_F-distichus_contig9611.19066.1 vs. uniprot
Match: A0A6H5JBG5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBG5_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 5.360e-8
Identity = 26/45 (57.78%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 IKSQRAPLSRCWTFIDRTIRPICPQMYNLKMYYNSWKRKHARKYQ 135
            I  + APL+RCW FID TIR I     N +++YN WKRKHA KYQ
Sbjct:   97 IHEKGAPLTRCWGFIDGTIRAISRPKRNQRLWYNGWKRKHALKYQ 141
[Close]
BLAST of mRNA_F-distichus_contig9611.19066.1 vs. uniprot
Match: A0A6H5KR86_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR86_9PHAE)

HSP 1 Score: 54.3 bits (129), Expect = 2.590e-7
Identity = 23/38 (60.53%), Postives = 28/38 (73.68%), Query Frame = 1 
Query:   22 LSRCWTFIDRTIRPICPQMYNLKMYYNSWKRKHARKYQ 135
            L+RCW FIDRT+R I     N +++YN WKRKHA KYQ
Sbjct:  191 LTRCWGFIDRTVRAIAKPRRNQRLWYNGWKRKHALKYQ 228
[Close]
BLAST of mRNA_F-distichus_contig9611.19066.1 vs. uniprot
Match: A0A6H5JZ31_9PHAE (DDE Tnp4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZ31_9PHAE)

HSP 1 Score: 51.6 bits (122), Expect = 2.330e-6
Identity = 23/45 (51.11%), Postives = 29/45 (64.44%), Query Frame = 1 
Query:    1 IKSQRAPLSRCWTFIDRTIRPICPQMYNLKMYYNSWKRKHARKYQ 135
            I  + +PL+RCW F+D TIR I P   N ++Y N WKR H  KYQ
Sbjct:  182 IAGRGSPLTRCWGFLDGTIRKIAPPWQNQRIYDNGWKRVHLLKYQ 226
[Close]
BLAST of mRNA_F-distichus_contig9611.19066.1 vs. uniprot
Match: A0A226CVX3_FOLCA (Delta-aminolevulinic acid dehydratase n=1 Tax=Folsomia candida TaxID=158441 RepID=A0A226CVX3_FOLCA)

HSP 1 Score: 48.1 bits (113), Expect = 3.910e-5
Identity = 21/45 (46.67%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 IKSQRAPLSRCWTFIDRTIRPICPQMYNLKMYYNSWKRKHARKYQ 135
            I  + APL+RC+ F+D T+RPIC    + + YYN  +R HA+K+Q
Sbjct:  149 INRKGAPLTRCFGFLDGTVRPICRPQLDQQEYYNGHRRTHAQKFQ 193
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9611.19066.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
A0A6H5KCV8_9PHAE2.980e-857.78DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JK13_9PHAE3.980e-857.78DDE Tnp4 domain-containing protein (Fragment) n=1 ... [more]
A0A6H5KND8_9PHAE4.470e-857.78DDE Tnp4 domain-containing protein n=3 Tax=Ectocar... [more]
A0A6H5JBG5_9PHAE5.360e-857.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KR86_9PHAE2.590e-760.53DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5JZ31_9PHAE2.330e-651.11DDE Tnp4 domain-containing protein n=1 Tax=Ectocar... [more]
A0A226CVX3_FOLCA3.910e-546.67Delta-aminolevulinic acid dehydratase n=1 Tax=Fols... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9611contigF-distichus_contig9611:7334..7468 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size135
Cds size135
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.6522527-CDS-F-distichus_contig9611:7333..74681622931138.6522527-CDS-F-distichus_contig9611:7333..7468Fucus distichus monoicousCDSF-distichus_contig9611 7334..7468 +
1690886174.5465016-CDS-F-distichus_contig9611:7333..74681690886174.5465016-CDS-F-distichus_contig9611:7333..7468Fucus distichus monoicousCDSF-distichus_contig9611 7334..7468 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9611.19066.1prot_F-distichus_contig9611.19066.1Fucus distichus monoicouspolypeptideF-distichus_contig9611 7334..7468 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9611.19066.1

>prot_F-distichus_contig9611.19066.1 ID=prot_F-distichus_contig9611.19066.1|Name=mRNA_F-distichus_contig9611.19066.1|organism=Fucus distichus monoicous|type=polypeptide|length=45bp
IKSQRAPLSRCWTFIDRTIRPICPQMYNLKMYYNSWKRKHARKYQ
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mRNA from alignment at F-distichus_contig9611:7334..7468+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9611.19066.1 ID=mRNA_F-distichus_contig9611.19066.1|Name=mRNA_F-distichus_contig9611.19066.1|organism=Fucus distichus monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at F-distichus_contig9611:7334..7468+ (Fucus distichus monoicous)
ATAAAGAGCCAACGTGCCCCTCTCTCTAGGTGCTGGACTTTCATAGACAG
AACCATTCGACCGATCTGCCCACAGATGTATAATCTGAAAATGTACTACA
ACAGCTGGAAGCGCAAACACGCACGAAAGTATCAG
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Coding sequence (CDS) from alignment at F-distichus_contig9611:7334..7468+

>mRNA_F-distichus_contig9611.19066.1 ID=mRNA_F-distichus_contig9611.19066.1|Name=mRNA_F-distichus_contig9611.19066.1|organism=Fucus distichus monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at F-distichus_contig9611:7334..7468+ (Fucus distichus monoicous)
ATAAAGAGCCAACGTGCCCCTCTCTCTAGGTGCTGGACTTTCATAGACAG
AACCATTCGACCGATCTGCCCACAGATGTATAATCTGAAAATGTACTACA
ACAGCTGGAAGCGCAAACACGCACGAAAGTATCAGATAAAGAGCCAACGT
GCCCCTCTCTCTAGGTGCTGGACTTTCATAGACAGAACCATTCGACCGAT
CTGCCCACAGATGTATAATCTGAAAATGTACTACAACAGCTGGAAGCGCA
AACACGCACGAAAGTATCAG
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