mRNA_F-distichus_contig96066.19063.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96066.19063.1
Unique NamemRNA_F-distichus_contig96066.19063.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig96066.19063.1 vs. uniprot
Match: A0A6H5JIG8_9PHAE (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIG8_9PHAE)

HSP 1 Score: 112 bits (281), Expect = 1.280e-27
Identity = 56/68 (82.35%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    1 QRASVVVPLCNVDGVASVLFTKRSSTLRAHSNEVCFPGGKVDSMVDQHIIQTALREMGEEIGIQEASV 204
            QRASV+VPLCNVDGVASVLFTKRS  LRA+ N+VCFPGGKVD   DQHIIQTA+REMGEEIGI E+SV
Sbjct:  374 QRASVMVPLCNVDGVASVLFTKRSGNLRAYKNDVCFPGGKVDIGQDQHIIQTAVREMGEEIGILESSV 441
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BLAST of mRNA_F-distichus_contig96066.19063.1 vs. uniprot
Match: D7FSP6_ECTSI (Nudix hydrolase domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSP6_ECTSI)

HSP 1 Score: 110 bits (276), Expect = 6.590e-27
Identity = 54/68 (79.41%), Postives = 61/68 (89.71%), Query Frame = 1 
Query:    1 QRASVVVPLCNVDGVASVLFTKRSSTLRAHSNEVCFPGGKVDSMVDQHIIQTALREMGEEIGIQEASV 204
            QRASV+VPLCNVDGVASVLFTKRS  +RA+ N+VCFPGGKVD   DQHII+TA+REMGEEIGI E+SV
Sbjct:  384 QRASVMVPLCNVDGVASVLFTKRSGNMRAYKNDVCFPGGKVDIGQDQHIIETAVREMGEEIGILESSV 451
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BLAST of mRNA_F-distichus_contig96066.19063.1 vs. uniprot
Match: A0A7S3MB31_9STRA (Hypothetical protein n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MB31_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 8.710e-20
Identity = 41/63 (65.08%), Postives = 51/63 (80.95%), Query Frame = 1 
Query:    1 QRASVVVPLCNVDGVASVLFTKRSSTLRAHSNEVCFPGGKVDSMVDQHIIQTALREMGEEIGI 189
            +RASV++PLCNV+GVASVLF +RS  +R H  +VCFPGG +D  VD  IIQT+LREM EE+GI
Sbjct:   97 RRASVIIPLCNVNGVASVLFERRSMKVRTHKQQVCFPGGMLDEGVDSTIIQTSLREMEEELGI 159
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BLAST of mRNA_F-distichus_contig96066.19063.1 vs. uniprot
Match: A0A4D9DAL0_9STRA (Nudix hydrolase domain-containing protein n=3 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9DAL0_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 1.410e-18
Identity = 42/67 (62.69%), Postives = 53/67 (79.10%), Query Frame = 1 
Query:    4 RASVVVPLCNVDGVASVLFTKRSSTLRAHSNEVCFPGGKVDSMVDQHIIQTALREMGEEIGIQEASV 204
            RASVV+PLCNV+GVASVLF +RS  +R+  N+VCFPGG V+  +D +II+T+LREM EEIG    SV
Sbjct:  154 RASVVIPLCNVNGVASVLFERRSPFVRSFKNQVCFPGGMVEESLDVNIIETSLREMEEEIGFPARSV 220
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BLAST of mRNA_F-distichus_contig96066.19063.1 vs. uniprot
Match: A0A7S2GLJ1_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GLJ1_9STRA)

HSP 1 Score: 82.8 bits (203), Expect = 3.510e-18
Identity = 40/65 (61.54%), Postives = 47/65 (72.31%), Query Frame = 1 
Query:    1 QRASVVVPLCNVDGVASVLFTKRSSTLRAHSNEVCFPGGKVDSMVDQHIIQTALREMGEEIGIQE 195
            QRASVV+PLCNV+GV S+LF KR+  LR H  EVCFPGG V    D  I+ T LREM EE+G+ E
Sbjct:   23 QRASVVLPLCNVNGVPSILFEKRALELRKHPGEVCFPGGMVSEGDDHTIVDTCLREMCEEVGLNE 87
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BLAST of mRNA_F-distichus_contig96066.19063.1 vs. uniprot
Match: A0A482SUV1_9ARCH (CoA pyrophosphatase (Fragment) n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SUV1_9ARCH)

HSP 1 Score: 85.5 bits (210), Expect = 3.570e-18
Identity = 37/63 (58.73%), Postives = 50/63 (79.37%), Query Frame = 1 
Query:    1 QRASVVVPLCNVDGVASVLFTKRSSTLRAHSNEVCFPGGKVDSMVDQHIIQTALREMGEEIGI 189
            +RASVV+PLCNV G+ S+LF +RS+T+R H  +VCFPGG V+  VD  +I+T LREM EE+G+
Sbjct:  187 RRASVVIPLCNVQGIPSILFERRSATVRTHKQQVCFPGGMVEYGVDASVIETCLREMEEELGV 249
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BLAST of mRNA_F-distichus_contig96066.19063.1 vs. uniprot
Match: A0A7S3Y7X1_9EUKA (Hypothetical protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Y7X1_9EUKA)

HSP 1 Score: 84.7 bits (208), Expect = 1.060e-17
Identity = 37/63 (58.73%), Postives = 52/63 (82.54%), Query Frame = 1 
Query:    1 QRASVVVPLCNVDGVASVLFTKRSSTLRAHSNEVCFPGGKVDSMVDQHIIQTALREMGEEIGI 189
            +RASV++PLCN  GVA +LF +RS T+R+H ++VCFPGG VD+ +D +I++T LREM EE+GI
Sbjct:  211 KRASVILPLCNSQGVACLLFQRRSDTVRSHKSQVCFPGGVVDNRLDANIVETCLREMHEEMGI 273
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BLAST of mRNA_F-distichus_contig96066.19063.1 vs. uniprot
Match: B8CB77_THAPS (Nudix hydrolase domain-containing protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CB77_THAPS)

HSP 1 Score: 84.7 bits (208), Expect = 1.340e-17
Identity = 41/64 (64.06%), Postives = 48/64 (75.00%), Query Frame = 1 
Query:    1 QRASVVVPLCNVDGVASVLFTKRSSTLRAHSNEVCFPGGKVDSMVDQHIIQTALREMGEEIGIQ 192
            +RA VV+PLCNVDGV  +LF KRS  LRAH +EVC PGG V    D+ I+QT LREM EEIGI+
Sbjct:  381 KRAGVVLPLCNVDGVPCILFEKRSRDLRAHPDEVCLPGGMVSEGGDKSIVQTCLREMEEEIGIE 444
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BLAST of mRNA_F-distichus_contig96066.19063.1 vs. uniprot
Match: A0A7S2USV2_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2USV2_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 6.280e-17
Identity = 38/68 (55.88%), Postives = 53/68 (77.94%), Query Frame = 1 
Query:    1 QRASVVVPLCNVDGVASVLFTKRSSTLRAHSNEVCFPGGKVDSMVDQHIIQTALREMGEEIGIQEASV 204
            +RA+V++ LCNVDGV S+LF+KRS  + +H NEVCFPGG VD   D ++++T LRE+ EEIGI + +V
Sbjct:  205 RRAAVLLTLCNVDGVPSILFSKRSDKVTSHKNEVCFPGGHVDEQ-DDNVVETCLREVREEIGIPDTTV 271
[Close]
BLAST of mRNA_F-distichus_contig96066.19063.1 vs. uniprot
Match: A0A7S0DGZ8_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0DGZ8_9EUKA)

HSP 1 Score: 79.7 bits (195), Expect = 3.350e-16
Identity = 36/65 (55.38%), Postives = 50/65 (76.92%), Query Frame = 1 
Query:    1 QRASVVVPLCNVDGVASVLFTKRSSTLRAHSNEVCFPGGKVDSMVDQHIIQTALREMGEEIGIQE 195
            +RASV++PLCN  GVA VLF  RS  +R+H ++VCFPGG VD+  D +I++T LRE+ EE+GI +
Sbjct:  206 KRASVMLPLCNSQGVACVLFQYRSDNVRSHKSQVCFPGGIVDNRKDSNIVETCLRELEEEMGISQ 270
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96066.19063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JIG8_9PHAE1.280e-2782.35Nudix hydrolase domain-containing protein n=1 Tax=... [more]
D7FSP6_ECTSI6.590e-2779.41Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S3MB31_9STRA8.710e-2065.08Hypothetical protein n=1 Tax=Spumella elongata Tax... [more]
A0A4D9DAL0_9STRA1.410e-1862.69Nudix hydrolase domain-containing protein n=3 Tax=... [more]
A0A7S2GLJ1_9STRA3.510e-1861.54Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A482SUV1_9ARCH3.570e-1858.73CoA pyrophosphatase (Fragment) n=1 Tax=archaeon Ta... [more]
A0A7S3Y7X1_9EUKA1.060e-1758.73Hypothetical protein n=2 Tax=Lotharella globosa Ta... [more]
B8CB77_THAPS1.340e-1764.06Nudix hydrolase domain-containing protein n=1 Tax=... [more]
A0A7S2USV2_9STRA6.280e-1755.88Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S0DGZ8_9EUKA3.350e-1655.38Hypothetical protein (Fragment) n=1 Tax=Amorphochl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96066contigF-distichus_contig96066:13..1202 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score110.9
Seed ortholog evalue2.3e-22
Seed eggNOG ortholog2880.D7FSP6
KEGG koko:K18665
Hectar predicted targeting categoryother localisation
EggNOG free text desc.CoA pyrophosphatase activity
EggNOG OGsCOG0494@1,KOG3069@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000
Exons2
Model size204
Cds size204
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931138.385182-CDS-F-distichus_contig96066:12..1321622931138.385182-CDS-F-distichus_contig96066:12..132Fucus distichus monoicousCDSF-distichus_contig96066 13..132 +
1690886174.4713588-CDS-F-distichus_contig96066:12..1321690886174.4713588-CDS-F-distichus_contig96066:12..132Fucus distichus monoicousCDSF-distichus_contig96066 13..132 +
1622931138.4303074-CDS-F-distichus_contig96066:1118..12021622931138.4303074-CDS-F-distichus_contig96066:1118..1202Fucus distichus monoicousCDSF-distichus_contig96066 1119..1202 +
1690886174.4839494-CDS-F-distichus_contig96066:1118..12021690886174.4839494-CDS-F-distichus_contig96066:1118..1202Fucus distichus monoicousCDSF-distichus_contig96066 1119..1202 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96066.19063.1prot_F-distichus_contig96066.19063.1Fucus distichus monoicouspolypeptideF-distichus_contig96066 13..1202 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96066.19063.1

>prot_F-distichus_contig96066.19063.1 ID=prot_F-distichus_contig96066.19063.1|Name=mRNA_F-distichus_contig96066.19063.1|organism=Fucus distichus monoicous|type=polypeptide|length=68bp
QRASVVVPLCNVDGVASVLFTKRSSTLRAHSNEVCFPGGKVDSMVDQHII
QTALREMGEEIGIQEASV
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mRNA from alignment at F-distichus_contig96066:13..1202+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96066.19063.1 ID=mRNA_F-distichus_contig96066.19063.1|Name=mRNA_F-distichus_contig96066.19063.1|organism=Fucus distichus monoicous|type=mRNA|length=1190bp|location=Sequence derived from alignment at F-distichus_contig96066:13..1202+ (Fucus distichus monoicous)
CAAAGAGCATCTGTGGTGGTACCGCTGTGCAACGTGGACGGCGTCGCGTC
GGTGCTCTTCACCAAGCGGTCCAGCACCTTGCGAGCTCACAGCAACGAGG
TCTGCTTTCCGGGGGGCAAGGTGAGACCGGCTTCCATCGTCGTCATCATC
ATCATAGGCACGAGTCATGCGCCTGCATGTATGTAGTCGTTTTTATTGTT
GCCTCCCCGATGCATCGGGAGAGGAGCCTAAACCAATCCCAAGCAACGAT
CGAACATGAAAATTAAAAACAAGTAAAATGTAATGACAGTCTCCGTTCTC
GAAGAGTCGGACTCTTTCCAAGGACAATTGTGCGAGGTGGCCCTCGGAAG
GCTGTTATGCTTGTTGCTGCATTTCGCATTGATAGGCTGTTCCCGGTCTA
TCATACGAGGATCTTAAGTCCTCATGATATTTTGTGCAAGCCCTTTTTTC
TTTTCTTTTTTCGATCCGCGCTTCCCTTTTCGATTGTATGTGTGCTGATA
CGGTTTTGCGTCCTTTTCTATTAATGTGTGTGTGTGTCTATTAATGTGTG
TGTGTGTCTATTAATGTGTGTGTGTGTATATTTGTTGAATTGCACATAAC
CGCGCAATCCGGCCCTGTCATCCTAGTCATTATATGCCACTCGCATTGAT
CCTCCCGAGGAGGGATCAATGAAACTTGTTACGAAAAAATGTATGTATGT
ATGTATGTATGTATGTATGTATGCATGTGTGTATTTATTAAGTTGCACAT
AACCGTGCAATCTGGACCTGCCATCCTAGTCATTATATGCCACTTGCATG
GATCCTCCCAAGGGTGTGTCTATGTGTGTGTGTGTGTGTGTATTTATTAA
ACTGCACATAACCGCGCAATCCGACCCTGTCATCCTAGCAATTCTATGCC
ACTCGCATTGATCCTCCCAAAGGGGGGATCAATGTGTTTTTGTGTGCGTT
TTTTTCTGTCGCCACGTGTACCACTTTCATAGCGGCGAATATGACCGACC
AGCTCCCTCAAGATTATTCCCGACAAATTCTGCCGATACGATGCCTTGCT
CCTCTCCTTTTCCGGCCGTTTCACGTCGACTTCGCGTGTGTTTCTCATAC
AACAAGGTGGACAGCATGGTGGACCAGCACATCATACAGACGGCTCTGAG
GGAGATGGGGGAGGAAATCGGCATCCAGGAGGCCTCGGTG
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Coding sequence (CDS) from alignment at F-distichus_contig96066:13..1202+

>mRNA_F-distichus_contig96066.19063.1 ID=mRNA_F-distichus_contig96066.19063.1|Name=mRNA_F-distichus_contig96066.19063.1|organism=Fucus distichus monoicous|type=CDS|length=408bp|location=Sequence derived from alignment at F-distichus_contig96066:13..1202+ (Fucus distichus monoicous)
CAAAGAGCATCTGTGGTGGTACCGCTGTGCAACGTGGACGGCGTCGCGTC
GGTGCTCTTCACCAAGCGGTCCAGCACCTTGCGAGCTCACAGCAACGAGG
TCTGCTTTCCGGGGGGCAAGCAAAGAGCATCTGTGGTGGTACCGCTGTGC
AACGTGGACGGCGTCGCGTCGGTGCTCTTCACCAAGCGGTCCAGCACCTT
GCGAGCTCACAGCAACGAGGTCTGCTTTCCGGGGGGCAAGGTGGACAGCA
TGGTGGACCAGCACATCATACAGACGGCTCTGAGGGAGATGGGGGAGGAA
ATCGGCATCCAGGAGGCCTCGGTGGTGGACAGCATGGTGGACCAGCACAT
CATACAGACGGCTCTGAGGGAGATGGGGGAGGAAATCGGCATCCAGGAGG
CCTCGGTG
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