mRNA_F-distichus_contig9603.19057.1 (mRNA) Fucus distichus monoicous
|
Overview
Homology
BLAST of mRNA_F-distichus_contig9603.19057.1 vs. uniprot
Match: D7FL48_ECTSI (Leucine rich repeat carbohydrate binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FL48_ECTSI) HSP 1 Score: 179 bits (454), Expect = 5.020e-44 Identity = 103/287 (35.89%), Postives = 162/287 (56.45%), Query Frame = 1
Query: 70 GCPPSGCVPSNVLDGYITDISRWSCKAEASEVDA-CELKLEFDEPQDIVQMKMALYKGDERTRSVNVWIDGVYTHTITSSGTTADLETYDLIAPGAMTVVLQASGVEGNGWLSITEVVFLIDD----SLIIVTD------VSTSANGWDTRV-EGAGCPPSGCLPGNVLDDSIADVSRWSCKAEVSGVDACELALEFNQPQNIVKIYMAFYKGDERTRSVDVFVDGVFESTILTSGTTRGYEAYELIATGARTVVLSLAAVEDNGWLSISGVRFVAGDILEVPPSPS 894
GCPP+GCV +N DG +D SRWSC D+ C + ++ Q + +K+ALY+GD RTR++++ +DG Y + TSSGTT+D E+ DL G VV ++ WLSI EV L+DD S + V + V+ +A+ +D R+ + GC P GC D +++ SRWSC E+ G+ C ++ + +I ++ +A Y+GD R R+V V VDG +T +SGTT G+E+ ++ + V ++ A + D+ WLSI + + + PPSP+
Sbjct: 50 GCPPAGCVGANTRDGITSDESRWSCAPSLDSSDSGCTITYTLEDEQHLEALKIALYQGDTRTRTIDISVDGNYAFSWTSSGTTSDFESIDLGVDGK--VVELVGDLQDWEWLSILEVEILVDDGDDGSEVDVVEAGELGTVTATADLYDDRLGDTVGCDPEGCTAALTRDGDMSEDSRWSCAPELGGL--CSISYDLGAEYSIDELQLAMYQGDTRVRTVGVAVDGDLVTTWTSSGTTSGFESVDMSGATGQVVTITGAELSDSEWLSIVETEIMVYNGVAPPPSPT 332
BLAST of mRNA_F-distichus_contig9603.19057.1 vs. uniprot
Match: A0A6H5L1V3_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L1V3_9PHAE) HSP 1 Score: 174 bits (440), Expect = 3.600e-42 Identity = 107/315 (33.97%), Postives = 172/315 (54.60%), Query Frame = 1
Query: 16 VAEISASANGWDTRDE-GAGCPPSGCVPSNVLDGYITDISRWSCKAEA-SEVDACELKLEFDEPQDIVQMKMALYKGDERTRSVNVWIDGVYTHTITSSGTTADLETYDLIAPGAMTVVLQASGVEGNGWLSITEVVF-----LIDDSLIIVTDV---------STSANGWDTRV-EGAGCPPSGCLPGNVLDDSIADVSRWSCKAEVSGVDACELALEFNQPQNIVKIYMAFYKGDERTRSVDVFVDGVFESTILTSGTTRGYEAYELIATGARTVVLSLAAVEDNGWLSI--SGVRFVAGDILEVPPSPSPST 903
V ++ A+ +DTR GCPP GCV +N DG ++D SRWSC+ + C + ++ + + +++ALYKGD RTR++++++DG + T TSSGTT E+ L+ G VV + + WLSI EV ++DD ++V DV + +A+ +DTR+ + GC P GC D +++ SRWSC ++ G C ++ + N+ ++ + Y+GD RTR+VDV VDG +T +SGTT +E+ +L + V +S + D+ WLSI + + GD P+PSP+T
Sbjct: 30 VMSVTPEASVFDTRSTLPYGCPPDGCVAANTRDGDMSDESRWSCRPSLDASGSGCSITFTLEKVEYLGDIRIALYKGDTRTRTIDMYVDGRHITTWTSSGTTTGFESVLLMDQGQ--VVELVGDLNDDEWLSILEVEIDVDDGIVDDDTVVVLDVVEAAEMGTVTATADLYDTRLGDTVGCDPEGCTAALTRDGDMSEGSRWSCAPKLGG--PCSISYDLGAEYNVEQLRLRMYRGDSRTRTVDVSVDGALVTTWTSSGTTTEFESVDLSGAYGQVVTISGSNQADSQWLSIIETEIMVYEGDA----PAPSPTT 336
BLAST of mRNA_F-distichus_contig9603.19057.1 vs. uniprot
Match: D7G5D6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5D6_ECTSI) HSP 1 Score: 159 bits (402), Expect = 3.250e-38 Identity = 114/303 (37.62%), Postives = 157/303 (51.82%), Query Frame = 1
Query: 1441 GQCPSDTFSATGAPPCEKXXXXXXXXXXXTFCTVDALDSLGVPFFINNAILEDAPYGFAGYGYIDVNENQIIVI---EGGELEATGTVILFDDAKELPDSIALYYYVYKDLDESSTDFERGQGDVDPSTGIYSATIP-VTDGKSRVILSFVVLDEADTLTGSTNINQETVFALEVLNNDCEESYLTFTLEWDTD-ANLDLSVFEANGLEVT-GGYHGIVGYVDVDDMDGFGPEIYRLYNGLSVEEESVVGEYRAMV--WWGSGVSTTWTLTARVAGEVAWVETGVLPDGDELTTGLFSLTIDD 2325
G C S++FS+TGAPPC T C L L +P I A+ DA GFAG G + I + +GG + +GT + DD LP S +++ +Y + DF RGQ +DPSTG +S + + G SR++LSFVV+D A+ L +T FAL+V N+ C S LT TLEW + +++DL V E G V G VG++D DD GFGPE Y + + L V+GEY V + G + TW LTARV+GEV W+E G + T SL++ D
Sbjct: 138 GLCASNSFSSTGAPPCTTCPDGEVSGTGATACIRQELVGLSLPENIAAAMAADAMGGFAGPGSLTTTPAGTIQLTEEDGGSVSLSGTFVR-DDGAALPSSTSVF--IYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEAL---DTAGADTAFALDVSNSACVPS-LTITLEWTGEISDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYD 433
BLAST of mRNA_F-distichus_contig9603.19057.1 vs. uniprot
Match: A0A6H5KL74_9PHAE (F5/8 type C domain-containing protein n=3 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KL74_9PHAE) HSP 1 Score: 157 bits (397), Expect = 2.360e-35 Identity = 108/325 (33.23%), Postives = 169/325 (52.00%), Query Frame = 1
Query: 1 AALLE---VAEISASANGWDTRDEGA--GCPPSGCVPSNVLDGYITDI-SRWSCKAEASEVDA-CELKLEFDEPQDIVQMKMALYKGDERTRSVNVWIDGVYTHTITSSGTTADLETYDLIAPGAMTVVLQASGVEGNGWLSITEVVFLIDDSLIIVTDVS---------------TSANGWDTRV-EGAGCPPSGCLPGNVLDDSIADVSRWSCKAEVSGVDACELALEFNQPQNIVKIYMAFYKGDERTRSVDVFVDGVFESTILTSGTTRGYEAYELIATGARTVVLSLAAVEDNGWLSISGVRF-VAGDILEVPPSPSPST 903
AA++E +A ++ +A +DT + GC P+GC+ N DG T + SRWSCK + + C + + + +A+YKGDERTR++ + ID + TSSGTT D ET ++ G ++ +E + WLSI EV L+DD + DV+ TSA +D R+ + GC P+GC D ++D SRWSC + G C ++ + ++ ++ +A YKG R R+VDV VDG +T +SGTT G+E +L + V ++ ++D+ W+SI+ V D + PPSPS +T
Sbjct: 23 AAVVEASTLATVTVAAPLYDTTVTASDGGCSPTGCIGDNTRDGDATSVESRWSCKPALGDAGSVCRITYGLGIQYQLTGLNIAMYKGDERTRTLEINIDNLPYTVWTSSGTTTDFETIEVDTMGRWIDIVGV--LEDSEWLSIMEVEILVDDGVTDTDDVAGTTEVEAGSLGIVTATSAL-FDPRLGDSNGCDPAGCTAELTRDGDVSDGSRWSCAPSLGGT--CSISYDLGAVYDLSELRLALYKGTTRVRTVDVTVDGSLATTWTSSGTTDGFENVDLSGYSGQDVTVT-GVLDDSEWVSITETDIMVLSDSVVSPPSPSTTT 341
BLAST of mRNA_F-distichus_contig9603.19057.1 vs. uniprot
Match: D7G3X5_ECTSI (VWFD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X5_ECTSI) HSP 1 Score: 152 bits (384), Expect = 5.310e-35 Identity = 111/296 (37.50%), Postives = 152/296 (51.35%), Query Frame = 1
Query: 1462 FSATGAPPCEKXXXXXXXXXXXTFCTVDALDSLGVPFFINNAILEDAPYGFAGYGYIDVNENQIIVI---EGGELEATGTVILFDDAKELPDSIALYYYVYKDLDESSTDFERGQGDVDPSTGIYSATIP-VTDGKSRVILSFVVLDEADTLTGSTNINQETVFALEVLNNDCEESYLTFTLEWDTD-ANLDLSVFEANGLEVT-GGYHGIVGYVDVDDMDGFGPEIYRLYNGLSVEEESVVGEYRAMV--WWGSGVSTTWTLTARVAGEVAWVETGVLPDGDELTTGLFSLTIDD 2325
FS+TGAPPC T C L L +P I A+ DA GFAG G + I + +GG + +GT + DD LP S +++ +Y + DF RGQ +DPSTG +S + + G SR++LSFVV+D A+ L +T FAL+V N+ C S LT TLEW + +++DL V E G V G VG++D DD GFGPE Y + + L V+GEY V + G + TW LTARV+GEV W+E G + T SL++ D
Sbjct: 271 FSSTGAPPCTTCPDGEVSGTGATACIRQELVGLSLPENIAAAMAADAMGGFAGPGSLTTTPAGTIQLTEEDGGSVSLSGTFVR-DDGAALPSSTSVF--IYTENTAQPDDFVRGQEALDPSTGAFSTVVTDIPAGSSRLLLSFVVVDPAEAL---DTAGADTAFALDVSNSACVPS-LTITLEWTGETSDVDLYVVEPGGEVVYFSNRGGDVGFLDNDDTYGFGPENYIIDSALDPAASQVLGEYETYVKLYSGDAATETWRLTARVSGEVVWIEEGDFISSTQSDTFAVSLSVYD 559
BLAST of mRNA_F-distichus_contig9603.19057.1 vs. uniprot
Match: A0A6H5KH45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KH45_9PHAE) HSP 1 Score: 147 bits (372), Expect = 1.770e-32 Identity = 104/318 (32.70%), Postives = 160/318 (50.31%), Query Frame = 1
Query: 16 VAEISASANGWDTR-DEGAGCPPSGCVPSNVLDGYITDI-SRWSCKAEASEVDA-CELKLEFDEPQDIVQMKMALYKGDERTRSVNVWIDGVYTHTITSSGTTADLETYDLIAPGAMTVVLQASGVEGNGWLSITEVVFLIDDSLIIVTDVSTSANG-----------------WDTR--VEGAGCPPSGCLPGNVLDDSIADVSRWSCKAEVSGVDACELALEFNQPQNIVKIYMAFYKGDERTRSVDVFVDGVFESTILTSGTTRGYEAYELIATGARTVVLSLAAVEDNGWLSISGVRFVAGDILEVPPSPSPST 903
+A ++A A +D R +GC PSGCV DG T + SRW+CK + + C + + + +A+YKGDERTR++ + ID + T TSSGTT ET +L G ++ + + WLSI EV +IDD D +T+ N +D R V+G GC PSGC+ N D ++ SRWSC + G C ++ + ++ ++ +A +KG ER S+ V VD +T +SGTT G+EA +L T + + ++ ++D+ WLSI + +LE SP P+T
Sbjct: 13 LANVTAVAELYDPRLSAESGCDPSGCVAELTRDGDATSLESRWACKPALGDAGSECRITYGLGIQYQLSSLNIAMYKGDERTRTLEISIDNLPYTTWTSSGTTTGFETIELDTMGRWISIVGV--LADSEWLSIMEVKIMIDDGETGSDDDNTTTNASGVEASTLGSVTAGASFYDPRLAVDG-GCDPSGCVVDNTRDGDLSTASRWSCAPTLGG--ECTISYDLGTAYDLDELRLAMFKGTERQVSMKVRVDDALVTTWTSSGTTDGFEAIDLSGTWGQVLEIT-GVLDDSEWLSIIEAEIM---VLEDGASPMPTT 321
BLAST of mRNA_F-distichus_contig9603.19057.1 vs. uniprot
Match: A0A6H5KFA6_9PHAE (F5/8 type C domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KFA6_9PHAE) HSP 1 Score: 147 bits (371), Expect = 3.110e-32 Identity = 104/323 (32.20%), Postives = 163/323 (50.46%), Query Frame = 1
Query: 1 AALLE---VAEISASANGWDTR-DEGAGCPPSGCVPSNVLDGYITDI-SRWSCKAEASEVDA-CELKLEFDEPQDIVQMKMALYKGDERTRSVNVWIDGVYTHTITSSGTTADLETYDLIAPGAMTVVLQASGVEGNGWLSITEVVFLIDDSL------IIVTDVSTSANG--------WDTRV-EGAGCPPSGCLPGNVLDDSIADVSRWSCKAEVSGVDACELALEFNQPQNIVKIYMAFYKGDERTRSVDVFVDGVFESTILTSGTTRGYEAYELIATGARTVVLSLAAVEDNGWLSISGVRF-VAGDILEVPPSPSPST 903
AA++E +A ++A A+ +D R GC PSGCV DG T + SRWSC+ + + C + + + +A++KGDERTR++ + ID + TSSGTTA ET ++ G ++ +E + WLSI EV L+DD + + T+V + G +D R+ + GC P+GC D ++D SRWSC + G C ++ + ++ K+ +A Y G R R+VDV VDG +T +SGTT G+E +L + + ++ +++ WLSI V D + PPS S T
Sbjct: 22 AAIVEASTLATVTAVADLYDPRLSADNGCDPSGCVAELTRDGDATSLESRWSCQPALGDAGSVCRITYGLGIQYQLTGLNIAMFKGDERTRTLEINIDNLPYTVWTSSGTTAGFETIEVDTTGRWIEIVGV--LEDSEWLSIMEVEILVDDGVTDTDDVVDTTEVEAGSLGIVTATSALFDPRLGDSNGCDPAGCTAELTRDGDVSDESRWSCAPSLGGT--CSISYDLGAVYDLSKLRLALYNGATRVRTVDVSVDGSLATTWTSSGTTDGFENIDLSGYSGQDITVT-GVLDNLEWLSIKETEIMVLSDGVVFPPSASSPT 339
BLAST of mRNA_F-distichus_contig9603.19057.1 vs. uniprot
Match: D7FTH1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTH1_ECTSI) HSP 1 Score: 138 bits (348), Expect = 1.720e-29 Identity = 105/324 (32.41%), Postives = 159/324 (49.07%), Query Frame = 1
Query: 1 AALLE---VAEISASANGWD-TRDEGAGCPPSGCVPSNVLDGYITDI-SRWSCKAEASEVDA-CELKLEFDEPQDIVQMKMALYKGDERTRSVNVWIDGVYTHTITSSGTTADLETYDLIAPGAMTVVLQASGV-EGNGWLSITEVVFLI-------DDSLIIVTDV-----STSANGWDTRVEGA----------------GCPPSGCLPGNVLDDSIADVSRWSCKAEVSGVDACELALEFNQPQNIVKIYMAFYKGDERTRSVDVFVDGVFESTILTSGTTRGYEAYELIATGARTVVLSLAAVEDNGWLSISGVRFVAGD 867
AA++E +A ++A A+ +D + GC PSGCV DG +T + SRWSC+ + + C + + + +A+YKGDERTR++++ ID + T TSSGTT ET +L M + GV E + WLSI EV +I DD TD +TS + + GA GC PSGC+ N D ++ SRWSC + G C ++ + + ++ +A YKG ER +++V VD +T +SGTT EA +L T +TV ++ ++D+ WLSI V + D
Sbjct: 23 AAIVEASTLATVTAVADLYDPSLSAENGCDPSGCVAELTRDGDVTSLESRWSCQPALGDAGSECRITYGLGIQYQLSAVNIAMYKGDERTRTLDISIDNLPYTTWTSSGTTTGYETIEL---DTMAQWISVVGVLEDSEWLSIMEVEIMIEDGESGSDDGDTTATDAGDDDTTTSTSAVEVGSLGAVTVEASFYDPSLTVDGGCDPSGCVADNTRDGDLSTASRWSCAPTLGG--ECTISYDLGTVYELDELRLAMYKGTERQVTMEVRVDDTLVTTWTSSGTTDDLEAIDLSGTSGQTVEIT-GVLDDSEWLSIVEVEIMVED 340
BLAST of mRNA_F-distichus_contig9603.19057.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI) HSP 1 Score: 99.8 bits (247), Expect = 1.110e-20 Identity = 51/137 (37.23%), Postives = 79/137 (57.66%), Query Frame = 1
Query: 451 TDVSTSANGWDTRV-EGAGCPPSGCLPGNVLDDSIADVSRWSCKAEVSGVDACELALEFNQPQNIVKIYMAFYKGDERTRSVDVFVDGVFESTILTSGTTRGYEAYELIATGARTVVLSLAAVEDNGWLSISGVRFV 858
T V+ AN +D R E GC P GC D S D SRWSC ++ C++ +F +PQ+IV+I + FYKGDER R++ + FE TI +SGT+ YE +++ + + + ++D+ W+SI+ VRF+
Sbjct: 11 TTVNKWANAYDDRTSEYGGCDPDGCKASLTRDQSWQDESRWSCSEKLEDAQ-CKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRFM 146
BLAST of mRNA_F-distichus_contig9603.19057.1 vs. uniprot
Match: D7G277_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G277_ECTSI) HSP 1 Score: 106 bits (265), Expect = 6.580e-20 Identity = 56/154 (36.36%), Postives = 88/154 (57.14%), Query Frame = 1
Query: 13 EVAEISASANGWDTRDEGAGCPPSGCVPSNVLDGYITDISRWSCKAEASEV------DACELKLEFDEPQDIVQMKMALYKGDERTRSVNVWIDGVYTHTITSSGTTADLETYDLI----APGAMTVVLQASGVEGNGWLSITEVVFLIDDSLI 444
EV ++ + N +D R + GC P GC N DG +TD SRWSC A E + C++ E E Q + + +A KGD RTR++N+ ++G +TS GTT+ LET++L APG +++ +++SG+ + +LSI EV + DS +
Sbjct: 252 EVTTVTVTTNAFDARTDDDGCAPDGCTGENTRDGDLTDNSRWSCSAGLVEAAGGAAGEECQVMFELGEAQLVTSVSVAFLKGDTRTRTLNINVNGELFEVVTSGGTTSGLETFELDGGAGAPGVLSLGMESSGLTADEFLSIIEVEIAVGDSTV 405 The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9603.19057.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_F-distichus_contig9603.19057.1 >prot_F-distichus_contig9603.19057.1 ID=prot_F-distichus_contig9603.19057.1|Name=mRNA_F-distichus_contig9603.19057.1|organism=Fucus distichus monoicous|type=polypeptide|length=711bp MKMALYKGDERTRSVNVWIDGVYTHTITSSGTTADLETYDLIAPGAMTVVback to top mRNA from alignment at F-distichus_contig9603:2476..8393- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_F-distichus_contig9603.19057.1 ID=mRNA_F-distichus_contig9603.19057.1|Name=mRNA_F-distichus_contig9603.19057.1|organism=Fucus distichus monoicous|type=mRNA|length=5918bp|location=Sequence derived from alignment at F-distichus_contig9603:2476..8393- (Fucus distichus monoicous)back to top Coding sequence (CDS) from alignment at F-distichus_contig9603:2476..8393- >mRNA_F-distichus_contig9603.19057.1 ID=mRNA_F-distichus_contig9603.19057.1|Name=mRNA_F-distichus_contig9603.19057.1|organism=Fucus distichus monoicous|type=CDS|length=4266bp|location=Sequence derived from alignment at F-distichus_contig9603:2476..8393- (Fucus distichus monoicous)back to top |