mRNA_F-distichus_contig96015.19054.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig96015.19054.1
Unique NamemRNA_F-distichus_contig96015.19054.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig96015.19054.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig96015contigF-distichus_contig96015:519..870 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size353
Cds size351
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931137.1007214-CDS-F-distichus_contig96015:518..8691622931137.1007214-CDS-F-distichus_contig96015:518..869Fucus distichus monoicousCDSF-distichus_contig96015 519..869 +
1690886173.923583-CDS-F-distichus_contig96015:518..8691690886173.923583-CDS-F-distichus_contig96015:518..869Fucus distichus monoicousCDSF-distichus_contig96015 519..869 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig96015.19054.1prot_F-distichus_contig96015.19054.1Fucus distichus monoicouspolypeptideF-distichus_contig96015 519..869 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig96015.19054.1

>prot_F-distichus_contig96015.19054.1 ID=prot_F-distichus_contig96015.19054.1|Name=mRNA_F-distichus_contig96015.19054.1|organism=Fucus distichus monoicous|type=polypeptide|length=117bp
ILTGVNPLPPLIVGLLSSKTGPAYTLRRYTECTMVLGSCQHRAGEFNQLF
VKTDVFSDSELASLMRAVGLSACSLDRRNLTVSMLELSKFARETIHVIHG
CSDVLGFFTDGKYLGGC
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mRNA from alignment at F-distichus_contig96015:519..870+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig96015.19054.1 ID=mRNA_F-distichus_contig96015.19054.1|Name=mRNA_F-distichus_contig96015.19054.1|organism=Fucus distichus monoicous|type=mRNA|length=352bp|location=Sequence derived from alignment at F-distichus_contig96015:519..870+ (Fucus distichus monoicous)
ATTTTGACGGGTGTCAATCCCCTCCCCCCCCTTATCGTTGGATTACTCTC
GAGTAAAACCGGCCCAGCATATACTCTGCGACGATATACAGAGTGTACAA
TGGTCTTGGGCTCATGCCAGCACCGCGCAGGAGAATTCAACCAACTTTTT
GTCAAAACTGACGTGTTCTCCGACTCGGAGTTAGCTTCCCTGATGCGTGC
TGTCGGGCTCTCGGCCTGCTCGTTGGATCGGCGTAACCTCACCGTGTCGA
TGTTGGAACTCTCCAAGTTCGCGCGTGAGACCATACACGTCATACACGGG
TGCTCGGACGTACTGGGTTTCTTCACTGACGGAAAGTATCTGGGAGGGTG
TG
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Coding sequence (CDS) from alignment at F-distichus_contig96015:519..870+

>mRNA_F-distichus_contig96015.19054.1 ID=mRNA_F-distichus_contig96015.19054.1|Name=mRNA_F-distichus_contig96015.19054.1|organism=Fucus distichus monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at F-distichus_contig96015:519..870+ (Fucus distichus monoicous)
ATTTTGACGGGTGTCAATCCCCTCCCCCCCCTTATCGTTGGATTACTCTC
GAGTAAAACCGGCCCAGCATATACTCTGCGACGATATACAGAGTGTACAA
TGGTCTTGGGCTCATGCCAGCACCGCGCAGGAGAATTCAACCAACTTTTT
GTCAAAACTGACGTGTTCTCCGACTCGGAGTTAGCTTCCCTGATGCGTGC
TGTCGGGCTCTCGGCCTGCTCGTTGGATCGGCGTAACCTCACCGTGTCGA
TGTTGGAACTCTCCAAGTTCGCGCGTGAGACCATACACGTCATACACGGG
TGCTCGGACGTACTGGGTTTCTTCACTGACGGAAAGTATCTGGGAGGGTG
TATTTTGACGGGTGTCAATCCCCTCCCCCCCCTTATCGTTGGATTACTCT
CGAGTAAAACCGGCCCAGCATATACTCTGCGACGATATACAGAGTGTACA
ATGGTCTTGGGCTCATGCCAGCACCGCGCAGGAGAATTCAACCAACTTTT
TGTCAAAACTGACGTGTTCTCCGACTCGGAGTTAGCTTCCCTGATGCGTG
CTGTCGGGCTCTCGGCCTGCTCGTTGGATCGGCGTAACCTCACCGTGTCG
ATGTTGGAACTCTCCAAGTTCGCGCGTGAGACCATACACGTCATACACGG
GTGCTCGGACGTACTGGGTTTCTTCACTGACGGAAAGTATCTGGGAGGGT
GT
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