mRNA_F-distichus_contig95986.19051.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig95986.19051.1
Unique NamemRNA_F-distichus_contig95986.19051.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig95986.19051.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig95986contigF-distichus_contig95986:384..1421 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons1
Model size1038
Cds size1038
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931136.6882539-CDS-F-distichus_contig95986:383..14211622931136.6882539-CDS-F-distichus_contig95986:383..1421Fucus distichus monoicousCDSF-distichus_contig95986 384..1421 -
1690886173.7665668-CDS-F-distichus_contig95986:383..14211690886173.7665668-CDS-F-distichus_contig95986:383..1421Fucus distichus monoicousCDSF-distichus_contig95986 384..1421 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig95986.19051.1prot_F-distichus_contig95986.19051.1Fucus distichus monoicouspolypeptideF-distichus_contig95986 384..1421 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig95986.19051.1

>prot_F-distichus_contig95986.19051.1 ID=prot_F-distichus_contig95986.19051.1|Name=mRNA_F-distichus_contig95986.19051.1|organism=Fucus distichus monoicous|type=polypeptide|length=346bp
MRSAAFPLAITTILLISGCSSSNDNPTLADSDPSSVNGSTNDDSANIVDD
ELTGDDVNNLSIVSIPLDTIRADVLNALVGYQSESLGDMLYELANNVETA
STAVQLPGRIIDNDVVTFADNSTRNSFDCQFGGTLIRESISTDESTGAVT
ESSRFDSYAFDQCVTQINGGSLPAGNYELTGGHVYSSVGTSSPGGTFVNI
VTTWDTFNLQQVDGVSYDLTGTLSLSLLSTPGATTTTRDSQIVRYAESGS
DTTTLELTDAGFFQELFNVPPLGGTREVRIEGSYTGLLSQGETLQVLTGP
RFTESDGVSGDEERPLSGSLQISSTDGGMLTMNANGPLTISFISAD
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mRNA from alignment at F-distichus_contig95986:384..1421-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig95986.19051.1 ID=mRNA_F-distichus_contig95986.19051.1|Name=mRNA_F-distichus_contig95986.19051.1|organism=Fucus distichus monoicous|type=mRNA|length=1038bp|location=Sequence derived from alignment at F-distichus_contig95986:384..1421- (Fucus distichus monoicous)
ATGAGAAGCGCCGCATTTCCATTAGCGATTACCACAATATTACTGATCTC
CGGCTGCAGTTCCAGTAACGATAATCCGACACTTGCTGATTCCGACCCGT
CCTCCGTCAATGGTTCGACAAACGACGATAGTGCAAACATTGTGGATGAT
GAATTGACCGGGGACGATGTGAATAATTTGAGTATCGTATCGATTCCACT
CGACACTATCCGGGCAGACGTACTCAACGCACTGGTTGGGTATCAAAGTG
AATCGCTGGGGGATATGTTGTACGAGCTTGCTAACAACGTCGAGACCGCA
TCGACTGCTGTTCAATTACCAGGCAGGATTATTGACAACGATGTGGTGAC
GTTTGCAGATAACAGTACGCGCAACAGCTTTGATTGCCAATTCGGTGGAA
CCTTGATTCGGGAGAGTATCAGCACAGACGAGAGCACAGGTGCTGTCACC
GAATCCAGCCGATTCGACAGCTACGCTTTTGATCAGTGCGTCACACAGAT
CAATGGTGGCTCACTGCCTGCCGGTAACTATGAGTTAACCGGCGGCCATG
TCTATTCAAGTGTCGGAACTTCTTCCCCAGGTGGAACCTTCGTGAATATT
GTCACGACATGGGATACGTTCAACCTGCAACAAGTGGACGGAGTGAGCTA
CGATCTCACTGGAACACTATCGCTGTCTCTTCTTTCAACTCCAGGCGCTA
CTACCACCACTCGAGACAGTCAAATTGTTCGCTACGCAGAATCAGGCAGC
GATACCACAACGCTTGAGTTGACGGATGCCGGTTTCTTTCAGGAATTGTT
CAACGTGCCACCGCTGGGAGGCACGAGAGAGGTTCGTATAGAGGGTTCAT
ACACGGGACTCTTGTCTCAAGGAGAGACATTGCAGGTGCTTACTGGTCCC
CGGTTTACAGAGTCAGACGGAGTATCTGGCGATGAAGAACGCCCGCTGAG
CGGGAGCTTGCAAATCAGCTCTACCGATGGCGGCATGCTGACGATGAACG
CCAATGGTCCTTTGACAATCAGCTTTATCAGTGCCGAC
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Coding sequence (CDS) from alignment at F-distichus_contig95986:384..1421-

>mRNA_F-distichus_contig95986.19051.1 ID=mRNA_F-distichus_contig95986.19051.1|Name=mRNA_F-distichus_contig95986.19051.1|organism=Fucus distichus monoicous|type=CDS|length=2076bp|location=Sequence derived from alignment at F-distichus_contig95986:384..1421- (Fucus distichus monoicous)
ATGAGAAGCGCCGCATTTCCATTAGCGATTACCACAATATTACTGATCTC
CGGCTGCAGTTCCAGTAACGATAATCCGACACTTGCTGATTCCGACCCGT
CCTCCGTCAATGGTTCGACAAACGACGATAGTGCAAACATTGTGGATGAT
GAATTGACCGGGGACGATGTGAATAATTTGAGTATCGTATCGATTCCACT
CGACACTATCCGGGCAGACGTACTCAACGCACTGGTTGGGTATCAAAGTG
AATCGCTGGGGGATATGTTGTACGAGCTTGCTAACAACGTCGAGACCGCA
TCGACTGCTGTTCAATTACCAGGCAGGATTATTGACAACGATGTGGTGAC
GTTTGCAGATAACAGTACGCGCAACAGCTTTGATTGCCAATTCGGTGGAA
CCTTGATTCGGGAGAGTATCAGCACAGACGAGAGCACAGGTGCTGTCACC
GAATCCAGCCGATTCGACAGCTACGCTTTTGATCAGTGCGTCACACAGAT
CAATGGTGGCTCACTGCCTGCCGGTAACTATGAGTTAACCGGCGGCCATG
TCTATTCAAGTGTCGGAACTTCTTCCCCAGGTGGAACCTTCGTGAATATT
GTCACGACATGGGATACGTTCAACCTGCAACAAGTGGACGGAGTGAGCTA
CGATCTCACTGGAACACTATCGCTGTCTCTTCTTTCAACTCCAGGCGCTA
CTACCACCACTCGAGACAGTCAAATTGTTCGCTACGCAGAATCAGGCAGC
GATACCACAACGCTTGAGTTGACGGATGCCGGTTTCTTTCAGGAATTGTT
CAACGTGCCACCGCTGGGAGGCACGAGAGAGGTTCGTATAGAGGGTTCAT
ACACGGGACTCTTGTCTCAAGGAGAGACATTGCAGGTGCTTACTGGTCCC
CGGTTTACAGAGTCAGACGGAGTATCTGGCGATGAAGAACGCCCGCTGAG
CGGGAGCTTGCAAATCAGCTCTACCGATGGCGGCATGCTGACGATGAACG
CCAATGGTCCTTTGACAATCAGCTTTATCAGTGCCGACATGAGAAGCGCC
GCATTTCCATTAGCGATTACCACAATATTACTGATCTCCGGCTGCAGTTC
CAGTAACGATAATCCGACACTTGCTGATTCCGACCCGTCCTCCGTCAATG
GTTCGACAAACGACGATAGTGCAAACATTGTGGATGATGAATTGACCGGG
GACGATGTGAATAATTTGAGTATCGTATCGATTCCACTCGACACTATCCG
GGCAGACGTACTCAACGCACTGGTTGGGTATCAAAGTGAATCGCTGGGGG
ATATGTTGTACGAGCTTGCTAACAACGTCGAGACCGCATCGACTGCTGTT
CAATTACCAGGCAGGATTATTGACAACGATGTGGTGACGTTTGCAGATAA
CAGTACGCGCAACAGCTTTGATTGCCAATTCGGTGGAACCTTGATTCGGG
AGAGTATCAGCACAGACGAGAGCACAGGTGCTGTCACCGAATCCAGCCGA
TTCGACAGCTACGCTTTTGATCAGTGCGTCACACAGATCAATGGTGGCTC
ACTGCCTGCCGGTAACTATGAGTTAACCGGCGGCCATGTCTATTCAAGTG
TCGGAACTTCTTCCCCAGGTGGAACCTTCGTGAATATTGTCACGACATGG
GATACGTTCAACCTGCAACAAGTGGACGGAGTGAGCTACGATCTCACTGG
AACACTATCGCTGTCTCTTCTTTCAACTCCAGGCGCTACTACCACCACTC
GAGACAGTCAAATTGTTCGCTACGCAGAATCAGGCAGCGATACCACAACG
CTTGAGTTGACGGATGCCGGTTTCTTTCAGGAATTGTTCAACGTGCCACC
GCTGGGAGGCACGAGAGAGGTTCGTATAGAGGGTTCATACACGGGACTCT
TGTCTCAAGGAGAGACATTGCAGGTGCTTACTGGTCCCCGGTTTACAGAG
TCAGACGGAGTATCTGGCGATGAAGAACGCCCGCTGAGCGGGAGCTTGCA
AATCAGCTCTACCGATGGCGGCATGCTGACGATGAACGCCAATGGTCCTT
TGACAATCAGCTTTATCAGTGCCGAC
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