mRNA_F-distichus_contig95940.19049.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig95940.19049.1
Unique NamemRNA_F-distichus_contig95940.19049.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
BLAST of mRNA_F-distichus_contig95940.19049.1 vs. uniprot
Match: D7FXE0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXE0_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 4.460e-40
Identity = 71/147 (48.30%), Postives = 98/147 (66.67%), Query Frame = 1
Query:    1 KDDFGSSSIQKCWGYADITVGNLRVTYQDMRLWRVGSGKESVECNNEKLITGSSTAYIRSSKQFLQSTVFQHGHPMPTVIVASSFLRSGDDSPEITVDVLKDALPSTWHGTLFMLQHMSGLGTYWQFNNPTRTAWQDVGIKYPGSAP 441
            KDD  +S ++KCWGYAD+ VGNLR+TYQDMRL++V    +SV CNNEKL +GS++A++ S+K FL STVF+ G   P  I+A S+L   + +    ++VL D+LP +W G L  + HM+G   +W   NPTR A +DV I   G  P
Sbjct:  216 KDDMATSVLEKCWGYADLRVGNLRLTYQDMRLYQVSGKTDSVVCNNEKLTSGSTSAFVHSAKDFLASTVFRDGTQWPATILAPSYLVP-EKNVNHMIEVLMDSLPPSWEGKLLFVDHMAGFSIHWTQGNPTRAALKDVRITATGRTP 361          
BLAST of mRNA_F-distichus_contig95940.19049.1 vs. uniprot
Match: A0A6H5JGZ7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGZ7_9PHAE)

HSP 1 Score: 151 bits (381), Expect = 4.470e-40
Identity = 73/148 (49.32%), Postives = 101/148 (68.24%), Query Frame = 1
Query:    1 KDDFGSSSIQKCWGYADITVGNLRVTYQDMRLWRVGSGKESVECNNEKLITGSSTAYIRSSKQFLQSTVFQHGHPMPTVIVASS-FLRSGDDSPEITVDVLKDALPSTWHGTLFMLQHMSGLGTYWQFNNPTRTAWQDVGIKYPGSAP 441
            K    SS + KCWGYAD+ VGNLR+TYQDMRL+R     +SV CNNEKL + S++A + S+ QFL STVFQ G   PT+++A+S  + +  +  + +V+VL DA+P +W G LF + HM+GLG YW   NPT TA ++VGI +   +P
Sbjct:  278 KQGIRSSVLNKCWGYADVRVGNLRLTYQDMRLFRFTISTDSVACNNEKLTSESTSALVHSAGQFLASTVFQDGGQWPTMMMAASRLIPTRAEHTQFSVEVLMDAMPPSWEGKLFFVDHMAGLGNYWTEENPTMTALKNVGIWFDRMSP 425          
BLAST of mRNA_F-distichus_contig95940.19049.1 vs. uniprot
Match: A0A6H5K8P1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8P1_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 3.380e-38
Identity = 72/158 (45.57%), Postives = 97/158 (61.39%), Query Frame = 1
Query:    1 KDDFGSSSIQKCWGYADITVGNLRVTYQDMRLWRVGSGKESVECNNEKLITGSSTAYIRSSKQFLQSTVFQHGHPMPTVIVASSFLRSGDDSPEIT-----------VDVLKDALPSTWHGTLFMLQHMSGLGTYWQFNNPTRTAWQDVGIKYPGSAP 441
            KDD  +S +QKCWGYAD+ VGNLR+TYQDMRL++V    +SV CNNEKL +GS+ A++ S+K+FL ST F+ G   P  I+A S+L   ++  ++              VL D+LP +W G L  + HM+G   +W   NPTRTA  DV I   G  P
Sbjct:  201 KDDMATSVLQKCWGYADLRVGNLRLTYQDMRLYQVSGKTDSVVCNNEKLTSGSTAAFVHSAKEFLASTAFRDGTQWPATILAPSYLVPENNVNQMIEAYIRPASCAHAQVLMDSLPPSWEGKLLFVDHMAGFRIHWTQGNPTRTALMDVRITATGRTP 358          
BLAST of mRNA_F-distichus_contig95940.19049.1 vs. uniprot
Match: D8LJ62_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LJ62_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 1.760e-37
Identity = 63/131 (48.09%), Postives = 91/131 (69.47%), Query Frame = 1
Query:    1 KDDFGSSSIQKCWGYADITVGNLRVTYQDMRLWRVGSGKESVECNNEKLITGSSTAYIRSSKQFLQSTVFQHGHPMPTVIVASSFLRSGDDSPEITVDVLKDALPSTWHGTLFMLQHMSGLGTYWQFNNPT 393
            KD+F +S ++KCWG+ DI +GNLR++YQD+RL+ V S  ++  CN+EKL +GS+ AY+ S++ FLQ T+F+   P P+VI A S +   D++P + + VL DALPS+W GTL ML  + G G  W   NPT
Sbjct:  291 KDEFSTSVVKKCWGFIDIRIGNLRISYQDLRLYTVSSVDDATVCNDEKLASGSTAAYVSSAELFLQDTIFRENKPWPSVIWAPSNMIDSDEAPNLQISVLMDALPSSWRGTLVMLDQLYGYGYGWNTGNPT 421          
BLAST of mRNA_F-distichus_contig95940.19049.1 vs. uniprot
Match: D7FLN2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLN2_ECTSI)

HSP 1 Score: 136 bits (343), Expect = 2.090e-35
Identity = 59/139 (42.45%), Postives = 96/139 (69.06%), Query Frame = 1
Query:    1 KDDFGSSSIQKCWGYADITVGNLRVTYQDMRLWRVGSGKE-SVECNNEKLITGSSTAYIRSSKQFLQSTVFQHGHPMPTVIVASSFLRSGDDSPEITVDVLKDALPSTWHGTLFMLQHMSGLGTYWQFNNPTRTAWQDV 414
            K DF +S+IQKCWG+A++ VGNLR+TYQD+RL  VG  ++ S  C+++KL   +   ++ ++++FL+ +VF  G   P+VI+A  F+   D++  + + V+ DALPS W+GTL M++HM+GLG  + ++NPT     +V
Sbjct:  184 KSDFATSAIQKCWGFAEVRVGNLRLTYQDLRLHEVGLAQDDSAVCHDDKLAINNVAVFVAAARRFLRRSVFAAGKQWPSVIMAPPFMEDSDEAANLPITVIMDALPSAWNGTLLMMEHMAGLGFTYNYDNPTAATLAEV 322          
BLAST of mRNA_F-distichus_contig95940.19049.1 vs. uniprot
Match: A0A6H5JGW9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JGW9_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 3.360e-21
Identity = 63/191 (32.98%), Postives = 90/191 (47.12%), Query Frame = 1
Query:    1 KDDFGSSSIQKCWGYADITVGNLRVTYQDMRL-------------WR-------------------------------VGSGKESVECNNEKLITGSSTAYIRSSKQFLQSTVFQHGHPMPTVIVASSFLRSGDDSPEITVDVLKDALPSTWHGTLFMLQHMSGLGTYWQFNNPTRTAWQDVGIKYPGSAP 441
            K+D  SS +QKCWGYAD+ VGNLR+TYQ+                WR                               + +  +S+ CNNEKL++GS+ A+I S++QFL ST+F+ G P PTV++A S L                 +PS   GT F ++ +      W+  NPT TA +DV + Y   +P
Sbjct:  175 KNDIQSSVVQKCWGYADVRVGNLRLTYQEAVTDGLGRELAISALEWRQFHRELCWLRQLLFHNEAETNIMLLFFTNAGLSNSVDSLVCNNEKLMSGSTAAFIHSAEQFLASTIFREGGPWPTVVMAPSNL-----------------IPSNNEGTQFSVEEV-----LWKEENPTMTALEDVRMSYLSRSP 343          
BLAST of mRNA_F-distichus_contig95940.19049.1 vs. uniprot
Match: A0A2G8KP81_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KP81_STIJA)

HSP 1 Score: 73.2 bits (178), Expect = 2.750e-12
Identity = 42/127 (33.07%), Postives = 67/127 (52.76%), Query Frame = 1
Query:    1 KDDFGSSSIQKCWGYADITVGNLRVTYQDMRLWRVGSGKESVE--------CNNEKLITGSSTAYIRSSKQFLQSTVFQHGHPMPTVIVASSFLRSGDDSPEITVDVLKDALPSTWHGTLFMLQHMS 357
            K    +S   KCWGYA++ +GNL++  QD R+ R G  K  +         C+NEKL+   +   I  +K F + T+F +    P VIV +     GDD+  +    L +A+P +W+GTL+ L + +
Sbjct:  282 KSMISASDFDKCWGYAELKLGNLKLINQDFRIERFGDVKMEINRHVGLETTCHNEKLVNKGTYELILGAKGFWRETLFGYNKSWPDVIVVAI----GDDTQLMW---LLNAVPVSWNGTLYPLYNFN 401          
BLAST of mRNA_F-distichus_contig95940.19049.1 vs. uniprot
Match: D7FXD9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXD9_ECTSI)

HSP 1 Score: 52.0 bits (123), Expect = 6.280e-5
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 1
Query:    1 KDDFGSSSIQKCWGYADITVGNLRVTYQDMRLWRVGS 111
            KDD  +S++ KCWGY D+ VGNLR+TYQD+  W  G+
Sbjct:  290 KDDIATSTLGKCWGYTDLLVGNLRLTYQDV-YWYEGN 325          
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig95940.19049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
D7FXE0_ECTSI4.460e-4048.30Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGZ7_9PHAE4.470e-4049.32Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K8P1_9PHAE3.380e-3845.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LJ62_ECTSI1.760e-3748.09Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7FLN2_ECTSI2.090e-3542.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JGW9_9PHAE3.360e-2132.98Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2G8KP81_STIJA2.750e-1233.07Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
D7FXD9_ECTSI6.280e-556.76Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig95940contigF-distichus_contig95940:2..1646 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score150.6
Seed ortholog evalue5.7e-34
Seed eggNOG ortholog2880.D7FXE0
Hectar predicted targeting categoryother localisation
EggNOG OGs2E5RD@1,2SCI8@2759
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size443
Cds size441
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig95940.19049.1prot_F-distichus_contig95940.19049.1Fucus distichus monoicouspolypeptideF-distichus_contig95940 2..1644 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931136.5464232-CDS-F-distichus_contig95940:1..851622931136.5464232-CDS-F-distichus_contig95940:1..85Fucus distichus monoicousCDSF-distichus_contig95940 2..85 +
1690886173.7055373-CDS-F-distichus_contig95940:1..851690886173.7055373-CDS-F-distichus_contig95940:1..85Fucus distichus monoicousCDSF-distichus_contig95940 2..85 +
1622931136.5665424-CDS-F-distichus_contig95940:259..4691622931136.5665424-CDS-F-distichus_contig95940:259..469Fucus distichus monoicousCDSF-distichus_contig95940 260..469 +
1690886173.7191627-CDS-F-distichus_contig95940:259..4691690886173.7191627-CDS-F-distichus_contig95940:259..469Fucus distichus monoicousCDSF-distichus_contig95940 260..469 +
1622931136.581767-CDS-F-distichus_contig95940:953..10221622931136.581767-CDS-F-distichus_contig95940:953..1022Fucus distichus monoicousCDSF-distichus_contig95940 954..1022 +
1690886173.7304-CDS-F-distichus_contig95940:953..10221690886173.7304-CDS-F-distichus_contig95940:953..1022Fucus distichus monoicousCDSF-distichus_contig95940 954..1022 +
1622931136.6010802-CDS-F-distichus_contig95940:1566..16441622931136.6010802-CDS-F-distichus_contig95940:1566..1644Fucus distichus monoicousCDSF-distichus_contig95940 1567..1644 +
1690886173.74518-CDS-F-distichus_contig95940:1566..16441690886173.74518-CDS-F-distichus_contig95940:1566..1644Fucus distichus monoicousCDSF-distichus_contig95940 1567..1644 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig95940.19049.1

>prot_F-distichus_contig95940.19049.1 ID=prot_F-distichus_contig95940.19049.1|Name=mRNA_F-distichus_contig95940.19049.1|organism=Fucus distichus monoicous|type=polypeptide|length=147bp
KDDFGSSSIQKCWGYADITVGNLRVTYQDMRLWRVGSGKESVECNNEKLI
TGSSTAYIRSSKQFLQSTVFQHGHPMPTVIVASSFLRSGDDSPEITVDVL
KDALPSTWHGTLFMLQHMSGLGTYWQFNNPTRTAWQDVGIKYPGSAP
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mRNA from alignment at F-distichus_contig95940:2..1646+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig95940.19049.1 ID=mRNA_F-distichus_contig95940.19049.1|Name=mRNA_F-distichus_contig95940.19049.1|organism=Fucus distichus monoicous|type=mRNA|length=1645bp|location=Sequence derived from alignment at F-distichus_contig95940:2..1646+ (Fucus distichus monoicous)
AAAGACGACTTCGGCAGTAGCTCTATCCAGAAATGCTGGGGTTACGCCGA CATCACAGTAGGGAATCTTCGCGTTACATATCAGGTGGGTACGTCACATT CTTCTCGCGGTTACTCGATTTTACATGGGCTGAGACTCATGACCAAATTT TGTTTCGAACGGGGTGCTTTTTTGGTACCTTCGACGCAGAAAACGTGGTT GATGTTTTGGTTCGCTCATCTCAACGATGCCGCGTTCGATTGCGTTCCGT CCGCGCAGGACATGCGCCTTTGGAGAGTCGGCAGTGGGAAAGAATCCGTG GAATGCAACAACGAAAAACTTATCACCGGGAGCTCGACAGCGTACATCCG CTCGTCTAAACAATTTCTTCAGTCGACCGTGTTTCAGCACGGACATCCGA TGCCAACCGTCATCGTCGCTTCCTCCTTCCTTCGAAGTGGCGATGATTCA CCTGAAATAACTGTCGATGTATGTTAAGACAGTATTGATGTTTGTGAATG AATGTCGATGTTGACTTATTAAGGGTGTCATGGTCTTTCGAAGTAGCATG GTCGCTGTCAACTGCCGTAGGCGAGTCAAACGCACGCTCCCCGCGTGTGC GTGCCCAGTCCCTCGCAAGACGCCCTACTTAGATCTTCACGCCTCAAGAC TCCGTGCATGCCATTCGTGTCACATTTGGATGAAACTTGTACCACTATGT CCTGACTAACCTTGAAGGCGGCAACAGCGAATTTCCCGGACCGCCCAAAA CGCTCGACGGGGAAAGCACGACCCTGATCCACTTCGTTCCTGCGGTATCG ATGTGATGTTCGCACCATCATCGATTTATGATGGCTCTACGAAGTCATGT AGTTTCCTCTCGTGGCCGGCCTATTATAGCTCCTTATGAACTCGACGGGT TACGGAAATTCGACGTACCTTACGACCAGTCTTTTTGGCCGCGTGTCATC AGGTGCTGAAGGATGCGCTGCCCTCCACATGGCATGGAACTCTCTTCATG CTTCAACATATGAGCGGATTGGTGAGTATCGTCCATAACATTGCGGGCGA ATCGATTTTGTTGTTTTTTCTTGAAACATACATACGTCATAGTCTATACC TGGTATGTTTTAACAGAGCAGCTTTTTACGTAGGGTCTCACTTACGACAG ATAGGCCTCAACGTACCAGGTTACCAATCCCACCTACTGTAACGTCGCCA CCTTGCATGTGGTCACTTAGGATCTTCCCATCTCTCACCAGGTCTCTCGT ATGATGTTTCATCGCAATGCGAGTTCAGCATTCTTACACCTCGCCAATCA ATGGTTGGATTTTACTTACTCGCGTTCTCAAGCTTTCCGCTTCGGCAACC AGAATTAAAATCTTGATTCTGTCAAGAATCGAACTCGCGACCTCCTCAGT AGTGATCGACGAGGTTATCTATCACTCACTCTACTTGGACGACGACTTGC GGTGTCCCAGTGGGGGTGAAAAAACAGTTATAATCCATAAAGTTGTTTGG GTTATTAATTCGTTACCATGCGGCGCAACGGACGGAAAAAAATATCCACA CTTGGGTGAAAGCAGGGTACTTATTGGCAATTCAACAATCCCACAAGGAC CGCATGGCAAGATGTCGGCATCAAGTACCCCGGCAGTGCACCCTT
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Coding sequence (CDS) from alignment at F-distichus_contig95940:2..1646+

>mRNA_F-distichus_contig95940.19049.1 ID=mRNA_F-distichus_contig95940.19049.1|Name=mRNA_F-distichus_contig95940.19049.1|organism=Fucus distichus monoicous|type=CDS|length=882bp|location=Sequence derived from alignment at F-distichus_contig95940:2..1646+ (Fucus distichus monoicous)
AAAGACGACTTCGGCAGTAGCTCTATCCAGAAATGCTGGGGTTACGCCGA
CATCACAGTAGGGAATCTTCGCGTTACATATCAGAAAGACGACTTCGGCA
GTAGCTCTATCCAGAAATGCTGGGGTTACGCCGACATCACAGTAGGGAAT
CTTCGCGTTACATATCAGGACATGCGCCTTTGGAGAGTCGGCAGTGGGAA
AGAATCCGTGGAATGCAACAACGAAAAACTTATCACCGGGAGCTCGACAG
CGTACATCCGCTCGTCTAAACAATTTCTTCAGTCGACCGTGTTTCAGCAC
GGACATCCGATGCCAACCGTCATCGTCGCTTCCTCCTTCCTTCGAAGTGG
CGATGATTCACCTGAAATAACTGTCGATGACATGCGCCTTTGGAGAGTCG
GCAGTGGGAAAGAATCCGTGGAATGCAACAACGAAAAACTTATCACCGGG
AGCTCGACAGCGTACATCCGCTCGTCTAAACAATTTCTTCAGTCGACCGT
GTTTCAGCACGGACATCCGATGCCAACCGTCATCGTCGCTTCCTCCTTCC
TTCGAAGTGGCGATGATTCACCTGAAATAACTGTCGATGTGCTGAAGGAT
GCGCTGCCCTCCACATGGCATGGAACTCTCTTCATGCTTCAACATATGAG
CGGATTGGTGCTGAAGGATGCGCTGCCCTCCACATGGCATGGAACTCTCT
TCATGCTTCAACATATGAGCGGATTGGGTACTTATTGGCAATTCAACAAT
CCCACAAGGACCGCATGGCAAGATGTCGGCATCAAGTACCCCGGCAGTGC
ACCCGGTACTTATTGGCAATTCAACAATCCCACAAGGACCGCATGGCAAG
ATGTCGGCATCAAGTACCCCGGCAGTGCACCC
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