mRNA_F-distichus_contig9505.18963.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9505.18963.1
Unique NamemRNA_F-distichus_contig9505.18963.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
[Close]
BLAST of mRNA_F-distichus_contig9505.18963.1 vs. uniprot
Match: D8LU63_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LU63_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.190e-24
Identity = 56/88 (63.64%), Postives = 59/88 (67.05%), Query Frame = 1 
Query:  100 MAKTGGGRSKWGKASGKGPDGSSXXXXXXXXXXXXXXXXXLKKGGKRGRRLCHKEGCTLCPSFGFEGDVAVSCSHHKEEGMRNLTARR 363
            M K+ GGR K G  SG  P   +                 LKKGGKRGRRLCH EGCTLCPSFGFEGDVAVSCSHHKE+GMRNLTARR
Sbjct:    1 MVKSSGGRWK-GSGSGSAPSSPTRR---------------LKKGGKRGRRLCHMEGCTLCPSFGFEGDVAVSCSHHKEDGMRNLTARR 72
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9505.18963.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LU63_ECTSI1.190e-2463.64Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9505contigF-distichus_contig9505:4715..5125 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionEsV-1-7 domain protein
Ec32 orthologEc-16_000370.1
Exons1
Model size411
Cds size411
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.7644482-CDS-F-distichus_contig9505:4714..51251622931126.7644482-CDS-F-distichus_contig9505:4714..5125Fucus distichus monoicousCDSF-distichus_contig9505 4715..5125 +
1690886169.49624-CDS-F-distichus_contig9505:4714..51251690886169.49624-CDS-F-distichus_contig9505:4714..5125Fucus distichus monoicousCDSF-distichus_contig9505 4715..5125 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9505.18963.1prot_F-distichus_contig9505.18963.1Fucus distichus monoicouspolypeptideF-distichus_contig9505 4715..5125 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9505.18963.1

>prot_F-distichus_contig9505.18963.1 ID=prot_F-distichus_contig9505.18963.1|Name=mRNA_F-distichus_contig9505.18963.1|organism=Fucus distichus monoicous|type=polypeptide|length=137bp
NLKRAQDYRAVRGCSSSVLVDRDRRSKIVDYATMAKTGGGRSKWGKASGK
GPDGSSSSPSSSSTTTTSSPTRRLKKGGKRGRRLCHKEGCTLCPSFGFEG
DVAVSCSHHKEEGMRNLTARRCQHEGCFTVANFGMPG
back to top

mRNA from alignment at F-distichus_contig9505:4715..5125+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9505.18963.1 ID=mRNA_F-distichus_contig9505.18963.1|Name=mRNA_F-distichus_contig9505.18963.1|organism=Fucus distichus monoicous|type=mRNA|length=411bp|location=Sequence derived from alignment at F-distichus_contig9505:4715..5125+ (Fucus distichus monoicous)
AATCTCAAACGTGCTCAGGATTATAGGGCGGTGCGTGGTTGTTCCAGCAG
TGTCCTCGTCGACAGAGATCGAAGATCAAAGATCGTCGACTACGCTACCA
TGGCGAAGACCGGAGGGGGTAGATCGAAATGGGGCAAGGCATCTGGCAAG
GGTCCCGACGGGTCATCTTCTTCGCCATCTTCGTCTTCGACGACCACGAC
TTCTTCACCCACTAGGAGGCTTAAGAAAGGGGGGAAGCGGGGACGCCGCT
TGTGTCACAAGGAAGGGTGCACGCTGTGCCCTTCTTTTGGCTTCGAGGGC
GACGTGGCCGTTTCTTGTTCGCACCACAAGGAGGAAGGGATGAGAAACCT
GACTGCGAGGAGATGTCAGCACGAGGGCTGCTTCACCGTGGCCAACTTCG
GCATGCCGGGG
back to top

Coding sequence (CDS) from alignment at F-distichus_contig9505:4715..5125+

>mRNA_F-distichus_contig9505.18963.1 ID=mRNA_F-distichus_contig9505.18963.1|Name=mRNA_F-distichus_contig9505.18963.1|organism=Fucus distichus monoicous|type=CDS|length=822bp|location=Sequence derived from alignment at F-distichus_contig9505:4715..5125+ (Fucus distichus monoicous)
AATCTCAAACGTGCTCAGGATTATAGGGCGGTGCGTGGTTGTTCCAGCAG
TGTCCTCGTCGACAGAGATCGAAGATCAAAGATCGTCGACTACGCTACCA
TGGCGAAGACCGGAGGGGGTAGATCGAAATGGGGCAAGGCATCTGGCAAG
GGTCCCGACGGGTCATCTTCTTCGCCATCTTCGTCTTCGACGACCACGAC
TTCTTCACCCACTAGGAGGCTTAAGAAAGGGGGGAAGCGGGGACGCCGCT
TGTGTCACAAGGAAGGGTGCACGCTGTGCCCTTCTTTTGGCTTCGAGGGC
GACGTGGCCGTTTCTTGTTCGCACCACAAGGAGGAAGGGATGAGAAACCT
GACTGCGAGGAGATGTCAGCACGAGGGCTGCTTCACCGTGGCCAACTTCG
GCATGCCGGGGAATCTCAAACGTGCTCAGGATTATAGGGCGGTGCGTGGT
TGTTCCAGCAGTGTCCTCGTCGACAGAGATCGAAGATCAAAGATCGTCGA
CTACGCTACCATGGCGAAGACCGGAGGGGGTAGATCGAAATGGGGCAAGG
CATCTGGCAAGGGTCCCGACGGGTCATCTTCTTCGCCATCTTCGTCTTCG
ACGACCACGACTTCTTCACCCACTAGGAGGCTTAAGAAAGGGGGGAAGCG
GGGACGCCGCTTGTGTCACAAGGAAGGGTGCACGCTGTGCCCTTCTTTTG
GCTTCGAGGGCGACGTGGCCGTTTCTTGTTCGCACCACAAGGAGGAAGGG
ATGAGAAACCTGACTGCGAGGAGATGTCAGCACGAGGGCTGCTTCACCGT
GGCCAACTTCGGCATGCCGGGG
back to top