mRNA_F-distichus_contig95019.18958.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig95019.18958.1
Unique NamemRNA_F-distichus_contig95019.18958.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig95019.18958.1 vs. uniprot
Match: D7FML5_ECTSI (Putative: similar to cytoplasmic dynein intermediate chain n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FML5_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 5.370e-24
Identity = 49/56 (87.50%), Postives = 52/56 (92.86%), Query Frame = 1 
Query:    1 FCSQVVEWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTANSPSLLTASTDGRVST 168
            +  QVV WDTRAKSLPVQRTPLSATGHTYPVYNLHIGGT N+PSLLTAST+GRVST
Sbjct:  423 YSGQVVVWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTDNAPSLLTASTEGRVST 478
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BLAST of mRNA_F-distichus_contig95019.18958.1 vs. uniprot
Match: A0A1W0AAI2_9STRA (Cytoplasmic dynein intermediate chain n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAI2_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 1.010e-18
Identity = 39/72 (54.17%), Postives = 56/72 (77.78%), Query Frame = 1 
Query:    1 FCSQVVEWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTANSPSLLTASTDGRVSTWNPSQLNQPLQVMQLR 216
            +  QVV WDTRAK+ PVQ+T LSA GHT+P+Y++ + GT +S +L++ASTDGR+  WN +QL+ P+ V+ LR
Sbjct:  329 YSGQVVLWDTRAKNTPVQKTTLSANGHTHPIYSMSVVGTKSSYNLVSASTDGRMCVWNINQLHSPVDVLDLR 400
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BLAST of mRNA_F-distichus_contig95019.18958.1 vs. uniprot
Match: F4PS77_CAVFA (Cytoplasmic dynein intermediate chain n=1 Tax=Cavenderia fasciculata (strain SH3) TaxID=1054147 RepID=F4PS77_CAVFA)

HSP 1 Score: 86.7 bits (213), Expect = 3.510e-18
Identity = 35/71 (49.30%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 FCSQVVEWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTANSPSLLTASTDGRVSTWNPSQLNQPLQVMQL 213
            +  Q+V WDTR+KS PVQRTPLS+ GHT+PVY++ + G+ N+ +L++ STDG++ +WN   L+QP++ + L
Sbjct:  341 YSGQIVVWDTRSKSTPVQRTPLSSVGHTHPVYSMSVVGSTNANTLISVSTDGKLCSWNLDNLSQPVETLDL 411
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BLAST of mRNA_F-distichus_contig95019.18958.1 vs. uniprot
Match: UPI0006449257 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006449257)

HSP 1 Score: 86.7 bits (213), Expect = 3.510e-18
Identity = 36/71 (50.70%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 FCSQVVEWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTANSPSLLTASTDGRVSTWNPSQLNQPLQVMQL 213
            +  Q+V WDTR+KS PVQRTPLS+ GHT+PVY++ + G+AN+ SL++ STDG++ +W+   L+QP++ + L
Sbjct:  344 YSGQIVVWDTRSKSTPVQRTPLSSIGHTHPVYSMSVVGSANANSLVSISTDGKLCSWSLENLSQPIETLDL 414
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BLAST of mRNA_F-distichus_contig95019.18958.1 vs. uniprot
Match: D3AZM5_POLPP (Cytoplasmic dynein intermediate chain n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3AZM5_POLPP)

HSP 1 Score: 86.7 bits (213), Expect = 3.510e-18
Identity = 36/71 (50.70%), Postives = 56/71 (78.87%), Query Frame = 1 
Query:    1 FCSQVVEWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTANSPSLLTASTDGRVSTWNPSQLNQPLQVMQL 213
            +  Q+V WDTR+KS PVQRTPLS+ GHT+PVY++ + G+AN+ SL++ STDG++ +W+   L+QP++ + L
Sbjct:  345 YSGQIVVWDTRSKSTPVQRTPLSSVGHTHPVYSMAVVGSANANSLVSISTDGKLCSWSLDNLSQPIETLDL 415
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BLAST of mRNA_F-distichus_contig95019.18958.1 vs. uniprot
Match: A0A151Z6W6_9MYCE (Cytoplasmic dynein intermediate chain n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151Z6W6_9MYCE)

HSP 1 Score: 86.7 bits (213), Expect = 3.520e-18
Identity = 37/71 (52.11%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:    1 FCSQVVEWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTANSPSLLTASTDGRVSTWNPSQLNQPLQVMQL 213
            +  Q+V WDTRAKS PVQRTPLS+ GHT+PVY++ + G+ N+ SL+  STDG++ +WN   L+QP + ++L
Sbjct:  353 YSGQIVVWDTRAKSTPVQRTPLSSIGHTHPVYSMSVIGSTNANSLVAISTDGKLCSWNLENLSQPTETIEL 423
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BLAST of mRNA_F-distichus_contig95019.18958.1 vs. uniprot
Match: K3X7T4_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X7T4_GLOUD)

HSP 1 Score: 86.7 bits (213), Expect = 3.520e-18
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 FCSQVVEWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTANSPSLLTASTDGRVSTWNPSQLNQPLQVMQLR 216
            +  Q+V WDTRAKS PVQ+T LS+  HT+P+Y++ + GT +S +L++ASTDGRV  WN  QL QP+ ++ LR
Sbjct:  353 YSGQIVIWDTRAKSAPVQKTSLSSCSHTHPIYSMSVVGTKSSYNLISASTDGRVCIWNIDQLQQPIDMLDLR 424
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BLAST of mRNA_F-distichus_contig95019.18958.1 vs. uniprot
Match: A0A8J4Q098_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4Q098_9MYCE)

HSP 1 Score: 85.9 bits (211), Expect = 6.560e-18
Identity = 37/71 (52.11%), Postives = 55/71 (77.46%), Query Frame = 1 
Query:    1 FCSQVVEWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTANSPSLLTASTDGRVSTWNPSQLNQPLQVMQL 213
            +  Q+V WDTRAKS PVQRTPLS+ GHT+PVY++ + G+AN+ SL++ STD ++ +WN   L QP++ ++L
Sbjct:  357 YSGQIVIWDTRAKSTPVQRTPLSSVGHTHPVYSMAVVGSANANSLVSISTDAKLCSWNLENLLQPIETIEL 427
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BLAST of mRNA_F-distichus_contig95019.18958.1 vs. uniprot
Match: A0A1E3ILX7_9TREE (Dynein intermediate chain, cytosolic n=2 Tax=Cryptococcus depauperatus TaxID=5208 RepID=A0A1E3ILX7_9TREE)

HSP 1 Score: 85.9 bits (211), Expect = 6.580e-18
Identity = 40/71 (56.34%), Postives = 53/71 (74.65%), Query Frame = 1 
Query:    1 FCSQVVEWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTANSPSLLTASTDGRVSTWNPSQLNQPLQVMQL 213
            +  QV+ WDTRAK LPV +TPLSATGHTYP+Y++ + GT N+ SL+T+STDG V +W    L QP +V+ L
Sbjct:  387 YSGQVLLWDTRAKHLPVLKTPLSATGHTYPIYSMKMIGTQNANSLITSSTDGLVCSWLVDMLAQPQEVLPL 457
[Close]
BLAST of mRNA_F-distichus_contig95019.18958.1 vs. uniprot
Match: A0A7S4MB13_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Vannella sp. CB-2014 TaxID=1487602 RepID=A0A7S4MB13_9EUKA)

HSP 1 Score: 84.3 bits (207), Expect = 7.870e-18
Identity = 38/72 (52.78%), Postives = 54/72 (75.00%), Query Frame = 1 
Query:    1 FCSQVVEWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTANSPSLLTASTDGRVSTWNPSQLNQPLQVMQLR 216
            +  Q+V WDTRAKS PVQR+PLS+TGHT+PVY L + GT N+ +L++ STDG +  W  S L+QP++ + L+
Sbjct:   26 YSGQLVLWDTRAKSTPVQRSPLSSTGHTHPVYCLDVVGTQNAHNLVSVSTDGTLCAWTLSNLSQPIEQIHLQ 97
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig95019.18958.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FML5_ECTSI5.370e-2487.50Putative: similar to cytoplasmic dynein intermedia... [more]
A0A1W0AAI2_9STRA1.010e-1854.17Cytoplasmic dynein intermediate chain n=1 Tax=Thra... [more]
F4PS77_CAVFA3.510e-1849.30Cytoplasmic dynein intermediate chain n=1 Tax=Cave... [more]
UPI00064492573.510e-1850.70hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3AZM5_POLPP3.510e-1850.70Cytoplasmic dynein intermediate chain n=1 Tax=Poly... [more]
A0A151Z6W6_9MYCE3.520e-1852.11Cytoplasmic dynein intermediate chain n=1 Tax=Tieg... [more]
K3X7T4_GLOUD3.520e-1852.78Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A8J4Q098_9MYCE6.560e-1852.11Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
A0A1E3ILX7_9TREE6.580e-1856.34Dynein intermediate chain, cytosolic n=2 Tax=Crypt... [more]
A0A7S4MB13_9EUKA7.870e-1852.78Hypothetical protein (Fragment) n=1 Tax=Vannella s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig95019contigF-distichus_contig95019:1113..1669 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score104.0
Seed ortholog evalue3e-20
Seed eggNOG ortholog2880.D7FML5
KEGG koko:K10415
KEGG Pathwayko04145,ko04962,ko05132,map04145,map04962,map05132
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000280,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005815,GO:0005816,GO:0005856,GO:0005868,GO:0005875,GO:0005938,GO:0006810,GO:0006928,GO:0006996,GO:0007017,GO:0007018,GO:0007049,GO:0007097,GO:0007127,GO:0008150,GO:0009987,GO:0010970,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0030286,GO:0030473,GO:0030705,GO:0030863,GO:0030981,GO:0030989,GO:0032781,GO:0032991,GO:0035974,GO:0043085,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043462,GO:0044093,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045503,GO:0045504,GO:0046907,GO:0048285,GO:0050790,GO:0051179,GO:0051234,GO:0051321,GO:0051336,GO:0051345,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656,GO:0061982,GO:0065007,GO:0065009,GO:0071840,GO:0071944,GO:0072384,GO:0099111,GO:0099568,GO:0140013,GO:1902494,GO:1903046,GO:2000574,GO:2000576,GO:2000580,GO:2000582
EggNOG free text desc.dynein heavy chain binding
EggNOG OGsKOG1587@1,KOG1587@2759
Ec32 ortholog descriptionWD domain protein similar to cytoplasmic dynein intermediate chain
Ec32 orthologEc-23_000750.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036,ko04812
Exons2
Model size219
Cds size219
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.3524804-CDS-F-distichus_contig95019:1112..12241622931126.3524804-CDS-F-distichus_contig95019:1112..1224Fucus distichus monoicousCDSF-distichus_contig95019 1113..1224 +
1690886169.3146179-CDS-F-distichus_contig95019:1112..12241690886169.3146179-CDS-F-distichus_contig95019:1112..1224Fucus distichus monoicousCDSF-distichus_contig95019 1113..1224 +
1622931126.3670049-CDS-F-distichus_contig95019:1562..16691622931126.3670049-CDS-F-distichus_contig95019:1562..1669Fucus distichus monoicousCDSF-distichus_contig95019 1563..1669 +
1690886169.3298757-CDS-F-distichus_contig95019:1562..16691690886169.3298757-CDS-F-distichus_contig95019:1562..1669Fucus distichus monoicousCDSF-distichus_contig95019 1563..1669 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig95019.18958.1prot_F-distichus_contig95019.18958.1Fucus distichus monoicouspolypeptideF-distichus_contig95019 1113..1669 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig95019.18958.1

>prot_F-distichus_contig95019.18958.1 ID=prot_F-distichus_contig95019.18958.1|Name=mRNA_F-distichus_contig95019.18958.1|organism=Fucus distichus monoicous|type=polypeptide|length=73bp
FCSQVVEWDTRAKSLPVQRTPLSATGHTYPVYNLHIGGTANSPSLLTAST
DGRVSTWNPSQLNQPLQVMQLR*
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mRNA from alignment at F-distichus_contig95019:1113..1669+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig95019.18958.1 ID=mRNA_F-distichus_contig95019.18958.1|Name=mRNA_F-distichus_contig95019.18958.1|organism=Fucus distichus monoicous|type=mRNA|length=557bp|location=Sequence derived from alignment at F-distichus_contig95019:1113..1669+ (Fucus distichus monoicous)
TTTTGTTCCCAGGTGGTCGAGTGGGACACCAGAGCCAAATCGCTTCCTGT
GCAGCGAACACCTTTGTCGGCCACAGGGCACACCTACCCCGTCTACAACT
TGCACATAGGAGGTCAGTCAACGCGCGGACGCGACGAACGACCTCGATGC
CATGATACCATGATATTGCATGATGATATATATCACATGGCCCGTTCACC
ACCGCATTATAAAGTGGGACACAATCACGATTGTATGATGATATCGCTGG
TGGCCTCCCATTGCGGCCCGGCCTTTGACAAAGCGCTGGATATATTTCTA
GATGTTCCCTTGTGCCTGGAAGGACAGTGCCGATTGTTGGTGCGCATCAC
ATTGTGGTGTGATGCTCAAGGCTTGGCGACTCTCGTTGCGTTTTCCGAGT
TTTTATTTTTTTATTTCCATTTTTCTCGATTTATCTTATTTTTAACTCAG
GTACCGCCAACTCGCCGTCCCTCCTGACGGCGTCCACGGACGGAAGAGTC
TCCACATGGAACCCAAGCCAGCTTAACCAACCTCTCCAGGTCATGCAACT
AAGGTGA
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Coding sequence (CDS) from alignment at F-distichus_contig95019:1113..1669+

>mRNA_F-distichus_contig95019.18958.1 ID=mRNA_F-distichus_contig95019.18958.1|Name=mRNA_F-distichus_contig95019.18958.1|organism=Fucus distichus monoicous|type=CDS|length=438bp|location=Sequence derived from alignment at F-distichus_contig95019:1113..1669+ (Fucus distichus monoicous)
TTTTGTTCCCAGGTGGTCGAGTGGGACACCAGAGCCAAATCGCTTCCTGT
GCAGCGAACACCTTTGTCGGCCACAGGGCACACCTACCCCGTCTACAACT
TGCACATAGGAGTTTTGTTCCCAGGTGGTCGAGTGGGACACCAGAGCCAA
ATCGCTTCCTGTGCAGCGAACACCTTTGTCGGCCACAGGGCACACCTACC
CCGTCTACAACTTGCACATAGGAGGTACCGCCAACTCGCCGTCCCTCCTG
ACGGCGTCCACGGACGGAAGAGTCTCCACATGGAACCCAAGCCAGCTTAA
CCAACCTCTCCAGGTCATGCAACTAAGGTGAGTACCGCCAACTCGCCGTC
CCTCCTGACGGCGTCCACGGACGGAAGAGTCTCCACATGGAACCCAAGCC
AGCTTAACCAACCTCTCCAGGTCATGCAACTAAGGTGA
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