mRNA_F-distichus_contig95004.18957.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig95004.18957.1
Unique NamemRNA_F-distichus_contig95004.18957.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig95004.18957.1 vs. uniprot
Match: A0A6H5JPX3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPX3_9PHAE)

HSP 1 Score: 167 bits (423), Expect = 8.400e-51
Identity = 83/91 (91.21%), Postives = 88/91 (96.70%), Query Frame = 1 
Query:    1 QVILLGNNNVGKSNLIARFHNNEFSEDFESTVGVEFVTKRMVVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRSSFQGLE 273
            +VILLGN+ VGKSNLIARFHNN+FSEDFESTVGVEFVTKR+ VDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVT+RSSF GLE
Sbjct:    8 KVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTNRSSFVGLE 98
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BLAST of mRNA_F-distichus_contig95004.18957.1 vs. uniprot
Match: D8LCK0_ECTSI (Rab11D, RAB family GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCK0_ECTSI)

HSP 1 Score: 161 bits (407), Expect = 4.420e-49
Identity = 80/91 (87.91%), Postives = 85/91 (93.41%), Query Frame = 1 
Query:    1 QVILLGNNNVGKSNLIARFHNNEFSEDFESTVGVEFVTKRMVVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRSSFQGLE 273
            +VILLGN+ VGKSNLIARFHNN+FSEDFESTVGVEFVTKR+ VDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLL YD T+R SF GLE
Sbjct:    8 KVILLGNSGVGKSNLIARFHNNDFSEDFESTVGVEFVTKRITVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLFYDFTNRFSFVGLE 98
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BLAST of mRNA_F-distichus_contig95004.18957.1 vs. uniprot
Match: A0A835YTJ1_9STRA (GTPase Ypt3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YTJ1_9STRA)

HSP 1 Score: 149 bits (375), Expect = 2.100e-43
Identity = 71/92 (77.17%), Postives = 84/92 (91.30%), Query Frame = 1 
Query:    1 QVILLGNNNVGKSNLIARFHNNEFSEDFESTVGVEFVTKRMVVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRSSFQGLEV 276
            +V+LLGN+ VGKSNLIAR+H NEFS +F ST+GVEFVTK++ VDGV ++LQIWDTAGQERYASMMKTYYRKAKG+LLVYDVTS+SSF  LE+
Sbjct:    7 KVVLLGNSGVGKSNLIARYHANEFSNEFMSTIGVEFVTKKIEVDGVAIRLQIWDTAGQERYASMMKTYYRKAKGALLVYDVTSQSSFDSLEI 98
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BLAST of mRNA_F-distichus_contig95004.18957.1 vs. uniprot
Match: A0A836CB79_9STRA (Ras family-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CB79_9STRA)

HSP 1 Score: 133 bits (335), Expect = 5.350e-37
Identity = 64/92 (69.57%), Postives = 81/92 (88.04%), Query Frame = 1 
Query:    1 QVILLGNNNVGKSNLIARFHNNEFSEDFESTVGVEFVTKRMVVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRSSFQGLEV 276
            +VILLG++ VGKSNLIAR+H++ FS +F ST+GVEFVTK++ VDG  V LQIWDTAGQERYA+MMKTYYR+AKG++LVYDVT  +SF+ LE+
Sbjct:   39 KVILLGSSGVGKSNLIARYHSDSFSTEFMSTIGVEFVTKKIEVDGQAVWLQIWDTAGQERYAAMMKTYYRRAKGAVLVYDVTDATSFEALEL 130
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BLAST of mRNA_F-distichus_contig95004.18957.1 vs. uniprot
Match: W4FUJ0_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FUJ0_9STRA)

HSP 1 Score: 124 bits (312), Expect = 2.480e-33
Identity = 59/91 (64.84%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 QVILLGNNNVGKSNLIARFHNNEFSEDFESTVGVEFVTKRMVVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRSSFQGLE 273
            +VILLGN+ VGK+NL++R    EFS DF ST+GVEF+T  M VDGVPVK QIWDTAGQER+ +MM TYYRKA G+LLV+DVT +++F G++
Sbjct:  146 KVILLGNSGVGKTNLLSRLAKGEFSTDFASTIGVEFLTHVMEVDGVPVKAQIWDTAGQERFHAMMSTYYRKAVGALLVFDVTDKTTFDGIQ 236
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BLAST of mRNA_F-distichus_contig95004.18957.1 vs. uniprot
Match: W4FSX7_9STRA (Uncharacterized protein n=3 Tax=Aphanomyces astaci TaxID=112090 RepID=W4FSX7_9STRA)

HSP 1 Score: 124 bits (312), Expect = 1.500e-32
Identity = 59/91 (64.84%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 QVILLGNNNVGKSNLIARFHNNEFSEDFESTVGVEFVTKRMVVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRSSFQGLE 273
            +VILLGN+ VGK+NL++R    EFS DF ST+GVEF+T  M VDGVPVK QIWDTAGQER+ +MM TYYRKA G+LLV+DVT +++F G++
Sbjct:  146 KVILLGNSGVGKTNLLSRLAKGEFSTDFASTIGVEFLTHVMEVDGVPVKAQIWDTAGQERFHAMMSTYYRKAVGALLVFDVTDKTTFDGIQ 236
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BLAST of mRNA_F-distichus_contig95004.18957.1 vs. uniprot
Match: A0A7S2RFG9_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RFG9_9STRA)

HSP 1 Score: 120 bits (300), Expect = 6.620e-32
Identity = 60/97 (61.86%), Postives = 74/97 (76.29%), Query Frame = 1 
Query:    1 QVILLGNNNVGKSNLIARFHNNEFSEDFESTVGVEFVTKRMVVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRSSFQGLEVGTEVW 291
            +V+LLGN  VGKSNL+AR +++ FS D  +TVG+EFVTK M VDG  VK QIWDTAGQER+++MM TYYRKAKG+LL++ VT R SF    V  E W
Sbjct:   17 KVVLLGNPRVGKSNLLARLNDDSFSPDNSNTVGIEFVTKTMTVDGEAVKAQIWDTAGQERFSTMMGTYYRKAKGALLLFSVTDRESF----VDAEAW 109
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BLAST of mRNA_F-distichus_contig95004.18957.1 vs. uniprot
Match: A0A024T985_9STRA (Uncharacterized protein n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024T985_9STRA)

HSP 1 Score: 122 bits (306), Expect = 1.070e-31
Identity = 58/91 (63.74%), Postives = 75/91 (82.42%), Query Frame = 1 
Query:    1 QVILLGNNNVGKSNLIARFHNNEFSEDFESTVGVEFVTKRMVVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRSSFQGLE 273
            +VILLGN+ VGK+NL++R    EFS DF ST+GVEF+T+ M VDGV VK QIWDTAGQER+ +MM TYYRKA G+LLV+DVT +++F G++
Sbjct:  142 KVILLGNSGVGKTNLLSRLAKGEFSTDFASTIGVEFLTQVMEVDGVQVKAQIWDTAGQERFHAMMSTYYRKAVGALLVFDVTDKTTFDGIQ 232
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BLAST of mRNA_F-distichus_contig95004.18957.1 vs. uniprot
Match: A0A6G0W803_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0W803_9STRA)

HSP 1 Score: 121 bits (304), Expect = 2.120e-31
Identity = 58/91 (63.74%), Postives = 74/91 (81.32%), Query Frame = 1 
Query:    1 QVILLGNNNVGKSNLIARFHNNEFSEDFESTVGVEFVTKRMVVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRSSFQGLE 273
            +VILLGN+ VGK+NL++R    EFS DF ST+GVEF+T  M VDGV VK QIWDTAGQER+ +MM TYYRKA G+LLV+DVT +++F G++
Sbjct:  146 KVILLGNSGVGKTNLLSRLAKGEFSTDFASTIGVEFLTHSMEVDGVIVKAQIWDTAGQERFHAMMSTYYRKAVGALLVFDVTDKTTFDGIQ 236
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BLAST of mRNA_F-distichus_contig95004.18957.1 vs. uniprot
Match: A0A6V2T6F4_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6V2T6F4_HETAK)

HSP 1 Score: 118 bits (295), Expect = 2.980e-31
Identity = 54/91 (59.34%), Postives = 76/91 (83.52%), Query Frame = 1 
Query:    1 QVILLGNNNVGKSNLIARFHNNEFSEDFESTVGVEFVTKRMVVDGVPVKLQIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRSSFQGLE 273
            +V+LLGN+ VGKS +++R ++NEFSEDF ST+GVEF+TK++ ++G  VK+QIWDTAGQERYA+MM TYYRKA+G++L Y+     SF+ +E
Sbjct:   12 KVVLLGNSGVGKSAVLSRLYSNEFSEDFLSTIGVEFLTKQLDINGEMVKVQIWDTAGQERYAAMMGTYYRKARGAVLCYEAVRPESFESVE 102
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig95004.18957.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JPX3_9PHAE8.400e-5191.21Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCK0_ECTSI4.420e-4987.91Rab11D, RAB family GTPase n=1 Tax=Ectocarpus silic... [more]
A0A835YTJ1_9STRA2.100e-4377.17GTPase Ypt3 n=1 Tax=Tribonema minus TaxID=303371 R... [more]
A0A836CB79_9STRA5.350e-3769.57Ras family-domain-containing protein n=1 Tax=Tribo... [more]
W4FUJ0_9STRA2.480e-3364.84Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
W4FSX7_9STRA1.500e-3264.84Uncharacterized protein n=3 Tax=Aphanomyces astaci... [more]
A0A7S2RFG9_9STRA6.620e-3261.86Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A024T985_9STRA1.070e-3163.74Uncharacterized protein n=2 Tax=Aphanomyces invada... [more]
A0A6G0W803_9STRA2.120e-3163.74Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A6V2T6F4_HETAK2.980e-3159.34Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig95004contigF-distichus_contig95004:91..2192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score161.8
Seed ortholog evalue1.7e-37
Seed eggNOG ortholog2880.D8LCK0
Hectar predicted targeting categoryother localisation
EggNOG free text desc.GTP binding
EggNOG OGsCOG1100@1,KOG0087@2759
Ec32 ortholog descriptionRab11D, RAB family GTPase
Ec32 orthologEc-03_002620.1
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size294
Cds size294
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931126.2787797-CDS-F-distichus_contig95004:90..2431622931126.2787797-CDS-F-distichus_contig95004:90..243Fucus distichus monoicousCDSF-distichus_contig95004 91..243 +
1690886169.2891514-CDS-F-distichus_contig95004:90..2431690886169.2891514-CDS-F-distichus_contig95004:90..243Fucus distichus monoicousCDSF-distichus_contig95004 91..243 +
1622931126.303146-CDS-F-distichus_contig95004:2051..21921622931126.303146-CDS-F-distichus_contig95004:2051..2192Fucus distichus monoicousCDSF-distichus_contig95004 2052..2192 +
1690886169.3025842-CDS-F-distichus_contig95004:2051..21921690886169.3025842-CDS-F-distichus_contig95004:2051..2192Fucus distichus monoicousCDSF-distichus_contig95004 2052..2192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig95004.18957.1prot_F-distichus_contig95004.18957.1Fucus distichus monoicouspolypeptideF-distichus_contig95004 91..2192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig95004.18957.1

>prot_F-distichus_contig95004.18957.1 ID=prot_F-distichus_contig95004.18957.1|Name=mRNA_F-distichus_contig95004.18957.1|organism=Fucus distichus monoicous|type=polypeptide|length=98bp
QVILLGNNNVGKSNLIARFHNNEFSEDFESTVGVEFVTKRMVVDGVPVKL
QIWDTAGQERYASMMKTYYRKAKGSLLVYDVTSRSSFQGLEVGTEVW*
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mRNA from alignment at F-distichus_contig95004:91..2192+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig95004.18957.1 ID=mRNA_F-distichus_contig95004.18957.1|Name=mRNA_F-distichus_contig95004.18957.1|organism=Fucus distichus monoicous|type=mRNA|length=2102bp|location=Sequence derived from alignment at F-distichus_contig95004:91..2192+ (Fucus distichus monoicous)
CAGGTGATCCTGCTGGGCAACAACAACGTGGGCAAGAGCAACCTCATTGC
GCGGTTCCACAACAACGAGTTCTCGGAGGACTTCGAGAGCACAGTAGGGG
TAGAGTTCGTCACGAAACGGATGGTGGTCGACGGAGTTCCGGTCAAGCTT
CAGGTGTGCGCTTGAAATACTCCGTAAAACACTAGGAACCCACAATAAAA
ACAAAACAAAAATCCACACCCCTTATTTCCCCCACCCCCCCATCCCCCCA
CTCGTAAAAAAATGTATATTGGGCTTCTAGCTTTTCTCGCCTTAGTTGGT
ATTTTTTTTTGGGGGGGGGGAGGGGGAAGAAAAAATAAAATATTTTCGTT
TGGAATAATTTGATCGCGTCTTCCGCTTAACGTGTGGTTTTCGGTTGTGT
ATGCAAAACCATAGGGGAAAAACTTCGTGTTCCTATGGGGACAAAAAATA
TATATAACCCAATTGCTATATATATGGGAAAATAGAACACTTGTTCCAAC
AACCGGGTGGCAGAACTGTTCTAAGCGCGTATCTCGTTTTATTTTTGTGA
TTTGTGACGTACCTTGTATAGTATCGAAACGGACCCTTGTGTGTGTCCGT
GTGTCTGTGTCTGTGTGCGTCTGTGTATTTATTAAATTGCACATAACCGC
GCAATCCGGCCCTGTCATCCTAGTCATTCTATGCCACTCGCATTGACCCT
CCCAAGGGGGGATCATTGATACTACGAAAACCTCTGATCAGACGCGACAA
AGGGGACACACTCTCTCTACTTGTACAATTATTAGTTGAGCCCAGAGTAC
CTTGTGCTCCCCACCCCTGCTTCCTTGTTACTCTCTACATTATCTGAGTT
GGCAGCTACTGGACCAACCCTTTCTTTTTTACATCTGTATGTGTGTGTGT
GTGTGTGTGTTTATTTTGGCATTTGAAGCTTACCTGATATATTACATTTT
GAGCATCTTATCATGGTTTATTTTGGCTGTTTATAAGTCGCAGACCGTTA
GTTTTTACTAAATTATTGTTAGTATAGAGAACTTGTTTATTTTTTCCTTA
TATCAAGAATCAGCGGAAGTTTCGATCGAAGCCATGCATATACTGTAGCG
TCATGTGTTGATTGATTTCTTTGTTTTGGTTACATATCCGCCCAAAAATC
GACACCATGCAATGTCCATTTCATACCATTAGTGGGTGTGGGAAAGAGAG
GCGCATATTATTTGGTCCATGGTGACCTCCCTCCCAAGGCAGCACTCGTT
CGGAACTACCTTGAGGTTAACTGACCCTGTGCCGACGGGCTCTCGGCAGT
GAACGCCATCGATACGCAATGGCGTGACCCGATTAACTCGGGACTGACCA
GATAGCGTATGGCGGTTAAAAAAAATAAACGGACGCCGCCGCGGAACTCG
GGAGGGATCCCGTACGTTAGCACCAGATTCAGTATGAGTATGTAGATGAG
CAGGCCTACGCGGGAAGGGACTGCCAAACCCACCCGTCTCTCTTGCTGCA
TATGGTTTATAAACTCTCTCTTCTCTTTTTATTATGCGTTACAACCTCTC
AAAGAGCTACCTTATAAAAATATATTGTTTTTTCTTTTTCTTTTTCTTTT
TCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTC
TTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTTTTTCTAATTCTT
TTTTAAGTGGGACTGGAAACATGACACTCTTCGAACGCAATTCTGCTGCA
TAGAGAGCTATAATAACTATAATAATAAAACTGCTTGACTACTTCGTTTC
AATAGTAAAGTAGTCAAGAAGCAGTGATGTAGAAATAGAACAACAAATGC
AAAATATCTCTATTGCGTAACCAGGTATATATATATATATTTATGTCTAT
ACTGTAAATGTATATGTGTGTGTATGTATGCGTGTGTGTGTGTTGTTGTG
TGGTACGACAGATCTGGGATACGGCGGGTCAGGAGCGTTACGCCTCCATG
ATGAAGACGTACTACCGCAAGGCCAAGGGGTCGCTTCTCGTGTACGACGT
GACCAGTCGCTCGTCCTTCCAGGGGCTAGAGGTGGGAACGGAGGTGTGGT
AG
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Coding sequence (CDS) from alignment at F-distichus_contig95004:91..2192+

>mRNA_F-distichus_contig95004.18957.1 ID=mRNA_F-distichus_contig95004.18957.1|Name=mRNA_F-distichus_contig95004.18957.1|organism=Fucus distichus monoicous|type=CDS|length=588bp|location=Sequence derived from alignment at F-distichus_contig95004:91..2192+ (Fucus distichus monoicous)
CAGGTGATCCTGCTGGGCAACAACAACGTGGGCAAGAGCAACCTCATTGC
GCGGTTCCACAACAACGAGTTCTCGGAGGACTTCGAGAGCACAGTAGGGG
TAGAGTTCGTCACGAAACGGATGGTGGTCGACGGAGTTCCGGTCAAGCTT
CAGCAGGTGATCCTGCTGGGCAACAACAACGTGGGCAAGAGCAACCTCAT
TGCGCGGTTCCACAACAACGAGTTCTCGGAGGACTTCGAGAGCACAGTAG
GGGTAGAGTTCGTCACGAAACGGATGGTGGTCGACGGAGTTCCGGTCAAG
CTTCAGATCTGGGATACGGCGGGTCAGGAGCGTTACGCCTCCATGATGAA
GACGTACTACCGCAAGGCCAAGGGGTCGCTTCTCGTGTACGACGTGACCA
GTCGCTCGTCCTTCCAGGGGCTAGAGGTGGGAACGGAGGTGTGGTAGATC
TGGGATACGGCGGGTCAGGAGCGTTACGCCTCCATGATGAAGACGTACTA
CCGCAAGGCCAAGGGGTCGCTTCTCGTGTACGACGTGACCAGTCGCTCGT
CCTTCCAGGGGCTAGAGGTGGGAACGGAGGTGTGGTAG
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