mRNA_F-distichus_contig9499.18952.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig9499.18952.1
Unique NamemRNA_F-distichus_contig9499.18952.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig9499.18952.1 vs. uniprot
Match: W2TQM0_NECAM (Uncharacterized protein n=1 Tax=Necator americanus TaxID=51031 RepID=W2TQM0_NECAM)

HSP 1 Score: 70.5 bits (171), Expect = 3.970e-13
Identity = 38/111 (34.23%), Postives = 64/111 (57.66%), Query Frame = 1 
Query:    1 ITVATHNVRTMAVDRKHGVGRALDVLSMYDKLWCGVIGLQETCRRQGGVGLAVRTSITRDARTPEFISNRLLKVTFELRGRAKTVTFFVAYAPTETHNASNIHGFWSNLDR 333
            +T+ T+N RT+A D         D++    K+   VIGL ET RR GGVG+ V TS+T++  + E ++ R+ ++     G   T+T FVAYAPT ++    +  F+ ++++
Sbjct:    1 MTICTYNARTLATD-----AATEDLMMQPKKINYDVIGLTETRRRVGGVGILVNTSMTKNIDSFEQLTTRIGRLRMRRCGPTLTLTIFVAYAPTSSYKEEEVEAFYMDMEK 106
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig9499.18952.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
W2TQM0_NECAM3.970e-1334.23Uncharacterized protein n=1 Tax=Necator americanus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig9499contigF-distichus_contig9499:2827..3240 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size333
Cds size303
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig9499.18952.1prot_F-distichus_contig9499.18952.1Fucus distichus monoicouspolypeptideF-distichus_contig9499 2827..3210 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931125.5672894-CDS-F-distichus_contig9499:2826..30261622931125.5672894-CDS-F-distichus_contig9499:2826..3026Fucus distichus monoicousCDSF-distichus_contig9499 2827..3026 -
1690886168.9799445-CDS-F-distichus_contig9499:2826..30261690886168.9799445-CDS-F-distichus_contig9499:2826..3026Fucus distichus monoicousCDSF-distichus_contig9499 2827..3026 -
1622931125.583451-CDS-F-distichus_contig9499:3107..32101622931125.583451-CDS-F-distichus_contig9499:3107..3210Fucus distichus monoicousCDSF-distichus_contig9499 3108..3210 -
1690886168.996611-CDS-F-distichus_contig9499:3107..32101690886168.996611-CDS-F-distichus_contig9499:3107..3210Fucus distichus monoicousCDSF-distichus_contig9499 3108..3210 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622931125.5990927-UTR-F-distichus_contig9499:3210..32401622931125.5990927-UTR-F-distichus_contig9499:3210..3240Fucus distichus monoicousUTRF-distichus_contig9499 3211..3240 -
1690886169.00651-UTR-F-distichus_contig9499:3210..32401690886169.00651-UTR-F-distichus_contig9499:3210..3240Fucus distichus monoicousUTRF-distichus_contig9499 3211..3240 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig9499.18952.1

>prot_F-distichus_contig9499.18952.1 ID=prot_F-distichus_contig9499.18952.1|Name=mRNA_F-distichus_contig9499.18952.1|organism=Fucus distichus monoicous|type=polypeptide|length=101bp
MAVDRKHGVGRALDVLSMYDKLWCGVIGLQETCRRQGGVGLAVRTSITRD
ARTPEFISNRLLKVTFELRGRAKTVTFFVAYAPTETHNASNIHGFWSNLD
R
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mRNA from alignment at F-distichus_contig9499:2827..3240-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig9499.18952.1 ID=mRNA_F-distichus_contig9499.18952.1|Name=mRNA_F-distichus_contig9499.18952.1|organism=Fucus distichus monoicous|type=mRNA|length=414bp|location=Sequence derived from alignment at F-distichus_contig9499:2827..3240- (Fucus distichus monoicous)
ATCACAGTTGCCACGCACAACGTACGGACGATGGCGGTGGATAGGAAGCA
CGGAGTTGGACGGGCGCTAGATGTTTTGAGTATGTACGATAAACTGTGGT
GCGGCGTAATCGGTCTGCAGGAGACCTGCCGCAGTGAACATTCAGCCTTC
AGCCAGGCTAGCTACTTGGTGTACTGCAGCGGTGAGTACGGTGATGAAAA
TGGTGAGAAGAAAGGGCAAGGTGGAGTAGGACTAGCTGTGAGGACTTCCA
TCACGCGTGATGCTCGCACACCGGAGTTTATCAGTAATCGCTTGCTAAAG
GTTACATTTGAACTACGTGGTCGAGCTAAAACCGTTACGTTTTTTGTGGC
GTATGCTCCAACCGAGACACATAATGCTAGTAATATACATGGATTTTGGA
GTAACTTGGACAGA
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Coding sequence (CDS) from alignment at F-distichus_contig9499:2827..3240-

>mRNA_F-distichus_contig9499.18952.1 ID=mRNA_F-distichus_contig9499.18952.1|Name=mRNA_F-distichus_contig9499.18952.1|organism=Fucus distichus monoicous|type=CDS|length=606bp|location=Sequence derived from alignment at F-distichus_contig9499:2827..3240- (Fucus distichus monoicous)
ATGGCGGTGGATAGGAAGCACGGAGTTGGACGGGCGCTAGATGTTTTGAG
TATGTACGATAAACTGTGGTGCGGCGTAATCGGTCTGCAGGAGACCTGCC
GCAATGGCGGTGGATAGGAAGCACGGAGTTGGACGGGCGCTAGATGTTTT
GAGTATGTACGATAAACTGTGGTGCGGCGTAATCGGTCTGCAGGAGACCT
GCCGCAGGCAAGGTGGAGTAGGACTAGCTGTGAGGACTTCCATCACGCGT
GATGCTCGCACACCGGAGTTTATCAGTAATCGCTTGCTAAAGGTTACATT
TGAACTACGTGGTCGAGCTAAAACCGTTACGTTTTTTGTGGCGTATGCTC
CAACCGAGACACATAATGCTAGTAATATACATGGATTTTGGAGTAACTTG
GACAGAGGCAAGGTGGAGTAGGACTAGCTGTGAGGACTTCCATCACGCGT
GATGCTCGCACACCGGAGTTTATCAGTAATCGCTTGCTAAAGGTTACATT
TGAACTACGTGGTCGAGCTAAAACCGTTACGTTTTTTGTGGCGTATGCTC
CAACCGAGACACATAATGCTAGTAATATACATGGATTTTGGAGTAACTTG
GACAGA
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