mRNA_F-distichus_contig107845.671.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107845.671.1
Unique NamemRNA_F-distichus_contig107845.671.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig107845.671.1 vs. uniprot
Match: D8LL55_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL55_ECTSI)

HSP 1 Score: 81.3 bits (199), Expect = 1.140e-13
Identity = 40/70 (57.14%), Postives = 52/70 (74.29%), Query Frame = 3 
Query:   81 ADLDNTCQLGFDDFLDLDRRFPKMFYPVANLQKEIQKKFLGEVFWTRKKNLFDEARDNII-EAAGRSRKA 287
             D  +  +L F+ FLDLD+RFPKMFYPVANLQ E++K FLG+ FW +K  +F+E R+NII EA G + KA
Sbjct:  498 VDFGDFVKLSFNHFLDLDKRFPKMFYPVANLQSEMRKMFLGDAFWVKKLLIFNEGRENIIKEADGSASKA 567
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BLAST of mRNA_F-distichus_contig107845.671.1 vs. uniprot
Match: A0A836CC26_9STRA (EF-hand domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CC26_9STRA)

HSP 1 Score: 81.3 bits (199), Expect = 1.230e-13
Identity = 52/148 (35.14%), Postives = 80/148 (54.05%), Query Frame = 3 
Query:    3 SFGDLINLLNDIHKNNTGPIERALHAADLD--NTCQLGFDDFLDLDRRFPKMFYPVANLQKEIQKKFLGEVFWTRKKNLFDEARDNI----IEAAGRSRKARRRQQELMHLKTSSKRVLVATQKGAKMAVNRVREKLDKSKWMSKLFS 428
            SF DL+ LLN +H++ TG + + L    L   N  ++ + DFL LD+RFPKMFYPV +LQ  ++ KFLG  FW +K   F E R+ +    + AA R     RR       +    ++  A    A+   + V++KL  S+W++ + S
Sbjct:  874 SFDDLLALLNMLHRSATGQVIKGLRELSLSTVNGGRIMYADFLGLDKRFPKMFYPVQDLQDTMRSKFLGRDFWLKKGLKFQEIREKVASEQLGAAERDAWRERRIYMKEKRRQQMDKITNAASHAAEEVTSAVKQKLKSSQWLNDILS 1021
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BLAST of mRNA_F-distichus_contig107845.671.1 vs. uniprot
Match: F0YF26_AURAN (EF-hand domain-containing protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YF26_AURAN)

HSP 1 Score: 57.0 bits (136), Expect = 1.790e-5
Identity = 27/68 (39.71%), Postives = 43/68 (63.24%), Query Frame = 3 
Query:   24 LLNDIHK-NNTGPIERALHAADLDNTCQLGFDDFLDLDRRFPKMFYPVANLQKEIQKKFLGEVFWTRK 224
            LL+D+H   N G   RAL   +L +  +L +++FL+ D+ FP +FYP+   Q  +++KF G  +WTRK
Sbjct: 3599 LLSDLHAATNRGRTNRALREIELFDDGKLTYEEFLETDKNFPNLFYPLFEAQNLMRQKFFGTRYWTRK 3666
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107845.671.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LL55_ECTSI1.140e-1357.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CC26_9STRA1.230e-1335.14EF-hand domain-containing protein n=1 Tax=Tribonem... [more]
F0YF26_AURAN1.790e-539.71EF-hand domain-containing protein n=2 Tax=Aureococ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107845contigF-distichus_contig107845:2..1852 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size819
Cds size282
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107845.671.1prot_F-distichus_contig107845.671.1Fucus distichus monoicouspolypeptideF-distichus_contig107845 343..1464 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.6620917-UTR-F-distichus_contig107845:1..1051622929012.6620917-UTR-F-distichus_contig107845:1..105Fucus distichus monoicousUTRF-distichus_contig107845 2..105 +
1690885105.427361-UTR-F-distichus_contig107845:1..1051690885105.427361-UTR-F-distichus_contig107845:1..105Fucus distichus monoicousUTRF-distichus_contig107845 2..105 +
1622929012.6739774-UTR-F-distichus_contig107845:297..3421622929012.6739774-UTR-F-distichus_contig107845:297..342Fucus distichus monoicousUTRF-distichus_contig107845 298..342 +
1690885105.4378622-UTR-F-distichus_contig107845:297..3421690885105.4378622-UTR-F-distichus_contig107845:297..342Fucus distichus monoicousUTRF-distichus_contig107845 298..342 +
1622929012.7634754-UTR-F-distichus_contig107845:1464..18521622929012.7634754-UTR-F-distichus_contig107845:1464..1852Fucus distichus monoicousUTRF-distichus_contig107845 1465..1852 +
1690885106.6283722-UTR-F-distichus_contig107845:1464..18521690885106.6283722-UTR-F-distichus_contig107845:1464..1852Fucus distichus monoicousUTRF-distichus_contig107845 1465..1852 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.6883645-CDS-F-distichus_contig107845:342..3691622929012.6883645-CDS-F-distichus_contig107845:342..369Fucus distichus monoicousCDSF-distichus_contig107845 343..369 +
1690885105.4472396-CDS-F-distichus_contig107845:342..3691690885105.4472396-CDS-F-distichus_contig107845:342..369Fucus distichus monoicousCDSF-distichus_contig107845 343..369 +
1622929012.7019315-CDS-F-distichus_contig107845:688..7901622929012.7019315-CDS-F-distichus_contig107845:688..790Fucus distichus monoicousCDSF-distichus_contig107845 689..790 +
1690885105.4567122-CDS-F-distichus_contig107845:688..7901690885105.4567122-CDS-F-distichus_contig107845:688..790Fucus distichus monoicousCDSF-distichus_contig107845 689..790 +
1622929012.7441683-CDS-F-distichus_contig107845:1311..14641622929012.7441683-CDS-F-distichus_contig107845:1311..1464Fucus distichus monoicousCDSF-distichus_contig107845 1312..1464 +
1690885106.5715675-CDS-F-distichus_contig107845:1311..14641690885106.5715675-CDS-F-distichus_contig107845:1311..1464Fucus distichus monoicousCDSF-distichus_contig107845 1312..1464 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107845.671.1

>prot_F-distichus_contig107845.671.1 ID=prot_F-distichus_contig107845.671.1|Name=mRNA_F-distichus_contig107845.671.1|organism=Fucus distichus monoicous|type=polypeptide|length=94bp
MFYPVANLQKEIQKKFLGEVFWTRKKNLFDEARDNIIEAAGRSRKARRRQ
QELMHLKTSSKRVLVATQKGAKMAVNRVREKLDKSKWMSKLFS*
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mRNA from alignment at F-distichus_contig107845:2..1852+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107845.671.1 ID=mRNA_F-distichus_contig107845.671.1|Name=mRNA_F-distichus_contig107845.671.1|organism=Fucus distichus monoicous|type=mRNA|length=1851bp|location=Sequence derived from alignment at F-distichus_contig107845:2..1852+ (Fucus distichus monoicous)
TATCCTTCGGCGATTTGATAAATCTACTGAACGATATCCACAAGAACAAC
ACTGGTCCCATCGAGCGCGCCCTTCATGCGGCCGACTTGGACAACACGTG
TCAGGTGCTGCACGATATAATATGCGGGTCCATAGATACGGTCGTCACCG
GCGGCGCTATTCCTTTTTTGTCTTTCAAGCATGTACACACAATATACCCG
ACACAATATTCACTCAAGTGCTCAAAACAAGCATGGGATAAAATGATGGC
GACGCACGACACCGCCTGGGTGTGACTATCTCCTGTTGCCCAGCAGCTCG
GTTTTGACGATTTCTTGGACCTGGACAGGCGGTTCCCGAAGATGTTCTAT
CCGGTCGCCAACCTTCAGGTCAGGTGCAGAGTGCTCACATGCTGTGACGC
ATGCGCGCCGTTTGCCCAGGGTTTTTTGTAGCATTGAGTACAAGTCTTTC
ATCTACGAGTGGATGTTACTGTTTACGGAGGCGTTGCTGTGCACACGCAT
GGAATTTGCCTCCTGAAACACCACACTTTTGAACGGAGCAGGCCGCAGGT
TTTGAACTTGGCGAGAATACGGAATCGTGTCGCCTTTTGCTTCCATAAGA
AGTAGGCTCTAAACGATTAAGCGTATTAGTCCCTCGTTCATATCAGATCG
GATTGTTGCACGTTACTGTTTGTTGATGCTTCTCCAGAAAGAAATACAGA
AAAAGTTTCTTGGAGAGGTGTTTTGGACGAGAAAAAAAAACCTGTTCGAT
GAAGCACGAGATAATATTATTGAAGCCGCCGGGAGGTCGGTGAGTAACCC
GCGATTTTTTTTAATGTTCCCCTCCTTCTGATGGGGGTCATTCAAACTGC
TTGCCATAATGCAACTCTGTCTTCATATGGCATGAACATAATCGAAGAGA
GGTAACCGGCGGCTCCGTCTTTTCTAGACAGAAGAAAAACTCTGGGGTGA
AAATACTGACTCCTTACTATCATATCCGACTTCGTCATTCCCCATAACGA
TTTACATGCGAAGCAGCGGCTTCTTGAAGCAGGTAGGACCCGTGCATCTA
TGTCGATTTATCACAGTACATTACAGTAGTGATGATAAGCTTTACTTTTG
TTTTTTCCTGCGCACTTTCGATTGGCATGCCGTTGTTACTGTACTGTGTT
GCTCCCAAGACTTGGAATAGCTAAAAGAAAGTGTACAATAATAGTAGACA
TTTGGACGGTATATTACACGCTAGTGCCGAAGGAAGCCTAGGTTGTAGAG
AGCCCGCCATTTCCTGATTGGCTGTTGTCACATCGGACGATCCACGACCC
TTGCCGACAGCGCAAGGCAAGGCGGCGGCAACAGGAGCTAATGCACCTCA
AGACGTCTTCTAAGAGAGTCTTGGTGGCAACACAGAAGGGAGCCAAGATG
GCGGTAAACCGAGTGCGTGAAAAACTTGACAAGTCTAAGTGGATGTCGAA
ACTGTTTTCGTAGGAAAGACGCTCAAGGGATCTTCACATATCATCTCAAG
TCTAGAGAGTTTCCTGGATTGTAGGATGGCTTCAGGTGTACTGGTATTGG
GTCTCGAACATCTTCTCGTAACGAGGAAAGTTGGCCGTTCGCAGAGTACG
GGGCTGGAGTTCATCTATAGTATAGGGGTGAGAAAAATAAGTCGCATCAA
AGGGCACGTCCGTTAAGATACTTATATCAGAAGGATATTAGGGGTCTCTC
AGCTGAATAACGCACCATAGGTACGTTATACCTTATATTTACCTGCTTGT
GTCAGAATTAGGCCCAATCTTATGGGTCAGAAAAAAAGTGATCGATTTTT
TTTTTCTGATGAGAAAACCAATGCGACGTGATTTATGGTGGGACAGAAAA
A
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Coding sequence (CDS) from alignment at F-distichus_contig107845:2..1852+

>mRNA_F-distichus_contig107845.671.1 ID=mRNA_F-distichus_contig107845.671.1|Name=mRNA_F-distichus_contig107845.671.1|organism=Fucus distichus monoicous|type=CDS|length=564bp|location=Sequence derived from alignment at F-distichus_contig107845:2..1852+ (Fucus distichus monoicous)
ATGTTCTATCCGGTCGCCAACCTTCAGATGTTCTATCCGGTCGCCAACCT
TCAGAAAGAAATACAGAAAAAGTTTCTTGGAGAGGTGTTTTGGACGAGAA
AAAAAAACCTGTTCGATGAAGCACGAGATAATATTATTGAAGCCGCCGGG
AGGTCGAAAGAAATACAGAAAAAGTTTCTTGGAGAGGTGTTTTGGACGAG
AAAAAAAAACCTGTTCGATGAAGCACGAGATAATATTATTGAAGCCGCCG
GGAGGTCGCGCAAGGCAAGGCGGCGGCAACAGGAGCTAATGCACCTCAAG
ACGTCTTCTAAGAGAGTCTTGGTGGCAACACAGAAGGGAGCCAAGATGGC
GGTAAACCGAGTGCGTGAAAAACTTGACAAGTCTAAGTGGATGTCGAAAC
TGTTTTCGTAGCGCAAGGCAAGGCGGCGGCAACAGGAGCTAATGCACCTC
AAGACGTCTTCTAAGAGAGTCTTGGTGGCAACACAGAAGGGAGCCAAGAT
GGCGGTAAACCGAGTGCGTGAAAAACTTGACAAGTCTAAGTGGATGTCGA
AACTGTTTTCGTAG
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