mRNA_F-distichus_contig107788.665.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig107788.665.1
Unique NamemRNA_F-distichus_contig107788.665.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig107788.665.1 vs. uniprot
Match: U9W4Q0_9CYAN (Kinesin light chain 1 (Fragment) n=1 Tax=Leptolyngbya sp. Heron Island J TaxID=1385935 RepID=U9W4Q0_9CYAN)

HSP 1 Score: 63.2 bits (152), Expect = 2.210e-11
Identity = 28/41 (68.29%), Postives = 34/41 (82.93%), Query Frame = 1 
Query:   10 QGKYEDAEPLYKRALAIREETLGPRHPHVASSLNGLANLLQ 132
            QG+YE+AEPLY+R+L IREE LGP+HP V +SLN LA L Q
Sbjct:    2 QGRYEEAEPLYQRSLGIREEQLGPQHPDVVTSLNNLAGLYQ 42
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BLAST of mRNA_F-distichus_contig107788.665.1 vs. uniprot
Match: UPI0013D29528 (tetratricopeptide repeat protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D29528)

HSP 1 Score: 61.2 bits (147), Expect = 8.750e-11
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    7 NQGKYEDAEPLYKRALAIREETLGPRHPHVASSLNGLANL 126
            +QGKYE+AEPLY+RAL IRE  LGP HP VA++LN LA L
Sbjct:    3 SQGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_F-distichus_contig107788.665.1 vs. uniprot
Match: UPI001E5491FA (tetratricopeptide repeat protein n=1 Tax=Pseudanabaena sp. 'Roaring Creek' TaxID=1681830 RepID=UPI001E5491FA)

HSP 1 Score: 58.2 bits (139), Expect = 1.130e-9
Identity = 24/40 (60.00%), Postives = 35/40 (87.50%), Query Frame = 1 
Query:    7 NQGKYEDAEPLYKRALAIREETLGPRHPHVASSLNGLANL 126
            +QG+Y++AEPLYK+A+A+ +E LG RHP+VA+S+N LA L
Sbjct:    4 SQGRYKEAEPLYKQAIALMQEILGERHPNVATSINNLAGL 43
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BLAST of mRNA_F-distichus_contig107788.665.1 vs. uniprot
Match: D7G180_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G180_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 1.290e-9
Identity = 28/45 (62.22%), Postives = 36/45 (80.00%), Query Frame = 1 
Query:    1 LANQGKYEDAEPLYKRALAIREETLGPRHPHVASSLNGLANLLQS 135
            L +QGK+E+AEPLY+R+LAI EE  GP HP VA+ LN LA LL++
Sbjct:   78 LESQGKHEEAEPLYRRSLAIDEEVYGPDHPEVATDLNNLAGLLET 122
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BLAST of mRNA_F-distichus_contig107788.665.1 vs. uniprot
Match: UPI0013D05A06 (tetratricopeptide repeat-containing protein n=1 Tax=Desulfobacter hydrogenophilus TaxID=2291 RepID=UPI0013D05A06)

HSP 1 Score: 61.2 bits (147), Expect = 1.750e-9
Identity = 28/40 (70.00%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    7 NQGKYEDAEPLYKRALAIREETLGPRHPHVASSLNGLANL 126
            +QGKYE+AEPLY+RAL IRE  LGP HP VA++LN LA L
Sbjct:    3 SQGKYEEAEPLYQRALKIRETVLGPDHPSVATTLNNLAGL 42
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BLAST of mRNA_F-distichus_contig107788.665.1 vs. uniprot
Match: A0A256B9Y9_9CYAN (Tetratricopeptide repeat protein (Fragment) n=1 Tax=Pseudanabaena sp. SR411 TaxID=1980935 RepID=A0A256B9Y9_9CYAN)

HSP 1 Score: 59.3 bits (142), Expect = 2.060e-9
Identity = 26/39 (66.67%), Postives = 33/39 (84.62%), Query Frame = 1 
Query:   10 QGKYEDAEPLYKRALAIREETLGPRHPHVASSLNGLANL 126
            QG+YE+AEPLYK+ALA+ +E LG RHP VA+S+N LA L
Sbjct:    7 QGRYEEAEPLYKQALALTQELLGERHPSVANSINNLAGL 45
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BLAST of mRNA_F-distichus_contig107788.665.1 vs. uniprot
Match: UPI001F0F39F4 (tetratricopeptide repeat protein n=1 Tax=Thiorhodococcus mannitoliphagus TaxID=329406 RepID=UPI001F0F39F4)

HSP 1 Score: 58.9 bits (141), Expect = 3.330e-9
Identity = 26/37 (70.27%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:   10 QGKYEDAEPLYKRALAIREETLGPRHPHVASSLNGLA 120
            QG+Y +AEPL KRALA+REETLGP+HP VA SL+ +A
Sbjct:    8 QGRYTEAEPLQKRALALREETLGPKHPDVAMSLSNMA 44
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BLAST of mRNA_F-distichus_contig107788.665.1 vs. uniprot
Match: A0A6H5K8Z8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8Z8_9PHAE)

HSP 1 Score: 57.0 bits (136), Expect = 1.360e-8
Identity = 26/37 (70.27%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:    1 LANQGKYEDAEPLYKRALAIREETLGPRHPHVASSLN 111
            L  QGKY+DAE LY+R+LAIRE+ LGP HP VA SLN
Sbjct:   13 LKAQGKYDDAEQLYERSLAIREKVLGPEHPDVAQSLN 49
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BLAST of mRNA_F-distichus_contig107788.665.1 vs. uniprot
Match: A0A5A5TK08_9CHLR (NB-ARC domain-containing protein n=1 Tax=Dictyobacter arantiisoli TaxID=2014874 RepID=A0A5A5TK08_9CHLR)

HSP 1 Score: 58.5 bits (140), Expect = 2.890e-8
Identity = 29/42 (69.05%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:   10 QGKYEDAEPLYKRALAIREETLGPRHPHVASSLNGLANLLQS 135
            QGKY +AEPL KRALAIREE LG RHP  A+SLN LA L ++
Sbjct:  459 QGKYAEAEPLCKRALAIREEHLGARHPATANSLNNLAALYRA 500
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BLAST of mRNA_F-distichus_contig107788.665.1 vs. uniprot
Match: A0A1V1NVU5_9DELT (Uncharacterized protein n=1 Tax=Candidatus Magnetoglobus multicellularis str. Araruama TaxID=890399 RepID=A0A1V1NVU5_9DELT)

HSP 1 Score: 56.6 bits (135), Expect = 4.590e-8
Identity = 26/38 (68.42%), Postives = 31/38 (81.58%), Query Frame = 1 
Query:    7 NQGKYEDAEPLYKRALAIREETLGPRHPHVASSLNGLA 120
            +QGKYE+AEPLYKR+L IRE  LG  HP VA++LN LA
Sbjct:    7 SQGKYEEAEPLYKRSLGIRETKLGRDHPDVATTLNALA 44
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig107788.665.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
U9W4Q0_9CYAN2.210e-1168.29Kinesin light chain 1 (Fragment) n=1 Tax=Leptolyng... [more]
UPI0013D295288.750e-1170.00tetratricopeptide repeat protein n=1 Tax=Desulfoba... [more]
UPI001E5491FA1.130e-960.00tetratricopeptide repeat protein n=1 Tax=Pseudanab... [more]
D7G180_ECTSI1.290e-962.22TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
UPI0013D05A061.750e-970.00tetratricopeptide repeat-containing protein n=1 Ta... [more]
A0A256B9Y9_9CYAN2.060e-966.67Tetratricopeptide repeat protein (Fragment) n=1 Ta... [more]
UPI001F0F39F43.330e-970.27tetratricopeptide repeat protein n=1 Tax=Thiorhodo... [more]
A0A6H5K8Z8_9PHAE1.360e-870.27Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5A5TK08_9CHLR2.890e-869.05NB-ARC domain-containing protein n=1 Tax=Dictyobac... [more]
A0A1V1NVU5_9DELT4.590e-868.42Uncharacterized protein n=1 Tax=Candidatus Magneto... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig107788contigF-distichus_contig107788:306..800 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score61.6
Seed ortholog evalue1.8e-07
Seed eggNOG ortholog2880.D7G180
Hectar predicted targeting categoryother localisation
EggNOG free text desc.determination of stomach left/right asymmetry
EggNOG OGsCOG0457@1,KOG1840@2759
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size222
Cds size222
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929012.0509348-CDS-F-distichus_contig107788:305..4431622929012.0509348-CDS-F-distichus_contig107788:305..443Fucus distichus monoicousCDSF-distichus_contig107788 306..443 +
1690885105.19032-CDS-F-distichus_contig107788:305..4431690885105.19032-CDS-F-distichus_contig107788:305..443Fucus distichus monoicousCDSF-distichus_contig107788 306..443 +
1622929012.0680223-CDS-F-distichus_contig107788:716..8001622929012.0680223-CDS-F-distichus_contig107788:716..800Fucus distichus monoicousCDSF-distichus_contig107788 717..800 +
1690885105.2024949-CDS-F-distichus_contig107788:716..8001690885105.2024949-CDS-F-distichus_contig107788:716..800Fucus distichus monoicousCDSF-distichus_contig107788 717..800 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig107788.665.1prot_F-distichus_contig107788.665.1Fucus distichus monoicouspolypeptideF-distichus_contig107788 306..800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig107788.665.1

>prot_F-distichus_contig107788.665.1 ID=prot_F-distichus_contig107788.665.1|Name=mRNA_F-distichus_contig107788.665.1|organism=Fucus distichus monoicous|type=polypeptide|length=74bp
LANQGKYEDAEPLYKRALAIREETLGPRHPHVASSLNGLANLLQSQGKYD
DAEPLFKRALAIREETSGHRHPK*
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mRNA from alignment at F-distichus_contig107788:306..800+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig107788.665.1 ID=mRNA_F-distichus_contig107788.665.1|Name=mRNA_F-distichus_contig107788.665.1|organism=Fucus distichus monoicous|type=mRNA|length=495bp|location=Sequence derived from alignment at F-distichus_contig107788:306..800+ (Fucus distichus monoicous)
CTTGCAAATCAGGGCAAGTACGAGGACGCCGAGCCGCTTTACAAGCGTGC
CCTCGCCATCCGTGAGGAAACATTAGGTCCTCGACACCCACATGTGGCTT
CAAGTCTGAACGGCCTGGCGAATTTGTTGCAATCACAGGTAATGTGTCAT
TGATCGAGATCCCTCGTCTCTCCATTTTGGAATGTTGAAGCTGAATGAAG
AACATGATCTGTCAACCAAGTATGCGAGAGCGGAAAGATTTATTTGCGCC
CATTCTTGACGACGGACGGGGGCGATCTGGGAGGACCTCTTGCAAATTTT
ATCAAACAGACATTTCAGTTGGCACCTCGTTGGGGGAACGAGGCGACGTG
GTTGATCACTTGGCCCGCCCGAGTTGTGATTTCCACCATCACGCTTTTTC
TCGCAAATTAGGGCAAGTACGACGACGCTGAGCCTCTTTTCAAGCGTGCC
CTCGCCATCCGTGAGGAAACGTCAGGTCATCGACACCCGAAGTAG
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Coding sequence (CDS) from alignment at F-distichus_contig107788:306..800+

>mRNA_F-distichus_contig107788.665.1 ID=mRNA_F-distichus_contig107788.665.1|Name=mRNA_F-distichus_contig107788.665.1|organism=Fucus distichus monoicous|type=CDS|length=444bp|location=Sequence derived from alignment at F-distichus_contig107788:306..800+ (Fucus distichus monoicous)
CTTGCAAATCAGGGCAAGTACGAGGACGCCGAGCCGCTTTACAAGCGTGC
CCTCGCCATCCGTGAGGAAACATTAGGTCCTCGACACCCACATGTGGCTT
CAAGTCTGAACGGCCTGGCGAATTTGTTGCAATCACAGCTTGCAAATCAG
GGCAAGTACGAGGACGCCGAGCCGCTTTACAAGCGTGCCCTCGCCATCCG
TGAGGAAACATTAGGTCCTCGACACCCACATGTGGCTTCAAGTCTGAACG
GCCTGGCGAATTTGTTGCAATCACAGGGCAAGTACGACGACGCTGAGCCT
CTTTTCAAGCGTGCCCTCGCCATCCGTGAGGAAACGTCAGGTCATCGACA
CCCGAAGTAGGGCAAGTACGACGACGCTGAGCCTCTTTTCAAGCGTGCCC
TCGCCATCCGTGAGGAAACGTCAGGTCATCGACACCCGAAGTAG
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