mRNA_F-distichus_contig10778.662.1 (mRNA) Fucus distichus monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_F-distichus_contig10778.662.1
Unique NamemRNA_F-distichus_contig10778.662.1
TypemRNA
OrganismFucus distichus monoicous (Fucus distichus monoicous)
Homology
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BLAST of mRNA_F-distichus_contig10778.662.1 vs. uniprot
Match: A0A6H5L2L9_9PHAE (Post-GPI attachment to proteins factor 3 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2L9_9PHAE)

HSP 1 Score: 67.8 bits (164), Expect = 9.630e-13
Identity = 30/42 (71.43%), Postives = 33/42 (78.57%), Query Frame = 1 
Query:    1 VGDFPPVANRLLDAHAVWHGVTIPLMFIWYRFVIQDALHEAS 126
            V DFPP+  RLLDAHA+WH  TIPLMF WY FVIQDA HE +
Sbjct:  142 VNDFPPLF-RLLDAHAIWHFATIPLMFHWYHFVIQDARHEVT 182
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BLAST of mRNA_F-distichus_contig10778.662.1 vs. uniprot
Match: D8LDA6_ECTSI (Post-GPI attachment to proteins factor 3 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDA6_ECTSI)

HSP 1 Score: 68.2 bits (165), Expect = 3.830e-12
Identity = 33/48 (68.75%), Postives = 36/48 (75.00%), Query Frame = 1 
Query:    1 VGDFPPVANRLLDAHAVWHGVTIPLMFIWYRFVIQDALHEAS-SGKAT 141
            V DFPP+  RLLDAHA+WH  TIPLMF WY FVIQDA HE + S K T
Sbjct:  435 VNDFPPLF-RLLDAHAIWHFATIPLMFHWYHFVIQDARHEVTLSTKET 481
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BLAST of mRNA_F-distichus_contig10778.662.1 vs. uniprot
Match: A0A147B951_9ACAR (Post-GPI attachment to proteins factor 3 (Fragment) n=1 Tax=Carios mimon TaxID=360319 RepID=A0A147B951_9ACAR)

HSP 1 Score: 61.2 bits (147), Expect = 9.140e-10
Identity = 26/46 (56.52%), Postives = 34/46 (73.91%), Query Frame = 1 
Query:    1 VGDFPPVANRLLDAHAVWHGVTIPLMFIWYRFVIQDALHEASSGKA 138
            +GDFPP    ++DAHA+WH  T+PL F+WYRF++ D LHE S  KA
Sbjct:  247 LGDFPPWMF-VVDAHALWHLGTVPLPFLWYRFLMDDCLHELSRRKA 291
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BLAST of mRNA_F-distichus_contig10778.662.1 vs. uniprot
Match: A0A1X2IPY6_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2IPY6_9FUNG)

HSP 1 Score: 61.2 bits (147), Expect = 9.440e-10
Identity = 27/45 (60.00%), Postives = 32/45 (71.11%), Query Frame = 1 
Query:    7 DFPPVANRLLDAHAVWHGVTIPLMFIWYRFVIQDALHEASSGKAT 141
            DFPP A RLLDAH+ WH  TIPLM +WYRFV+ D  HE    K++
Sbjct:  271 DFPPHA-RLLDAHSFWHLSTIPLMVVWYRFVLADVKHEIKHYKSS 314
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BLAST of mRNA_F-distichus_contig10778.662.1 vs. uniprot
Match: A0A075AX79_ROZAC (Post-GPI attachment to proteins factor 3 n=1 Tax=Rozella allomycis (strain CSF55) TaxID=988480 RepID=A0A075AX79_ROZAC)

HSP 1 Score: 58.2 bits (139), Expect = 2.370e-9
Identity = 25/45 (55.56%), Postives = 33/45 (73.33%), Query Frame = 1 
Query:    1 VGDFPPVANRLLDAHAVWHGVTIPLMFIWYRFVIQDALHEASSGK 135
            V DFPP  N L+DAH++WH  TIPL+ +WYRF++QD  +EA   K
Sbjct:  100 VFDFPPY-NLLIDAHSLWHLSTIPLVSLWYRFLLQDGRYEALRRK 143
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BLAST of mRNA_F-distichus_contig10778.662.1 vs. uniprot
Match: A0A1X2I6B4_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2I6B4_9FUNG)

HSP 1 Score: 60.1 bits (144), Expect = 2.440e-9
Identity = 24/44 (54.55%), Postives = 32/44 (72.73%), Query Frame = 1 
Query:    7 DFPPVANRLLDAHAVWHGVTIPLMFIWYRFVIQDALHEASSGKA 138
            DFPP+  R+LDAH++WH  TIPLM +WY+FV+ D  HE    K+
Sbjct:  267 DFPPL-GRILDAHSLWHLSTIPLMMLWYKFVLVDTQHEMKHHKS 309
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BLAST of mRNA_F-distichus_contig10778.662.1 vs. uniprot
Match: A0A0B6Y5Y1_9EUPU (Post-GPI attachment to proteins factor 3 (Fragment) n=1 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B6Y5Y1_9EUPU)

HSP 1 Score: 56.6 bits (135), Expect = 3.000e-9
Identity = 23/45 (51.11%), Postives = 31/45 (68.89%), Query Frame = 1 
Query:    1 VGDFPPVANRLLDAHAVWHGVTIPLMFIWYRFVIQDALHEASSGK 135
            + DFPP+     DAHA+WHG T+PL  +WY F+I DAL E +S +
Sbjct:   40 ITDFPPLLWTF-DAHAIWHGGTVPLNLLWYSFIIDDALDEDTSKE 83
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BLAST of mRNA_F-distichus_contig10778.662.1 vs. uniprot
Match: A0A8H7SCW3_9FUNG (Post-GPI attachment to proteins factor 3 n=1 Tax=Mucor circinatus TaxID=2054153 RepID=A0A8H7SCW3_9FUNG)

HSP 1 Score: 56.6 bits (135), Expect = 4.240e-8
Identity = 24/43 (55.81%), Postives = 30/43 (69.77%), Query Frame = 1 
Query:    7 DFPPVANRLLDAHAVWHGVTIPLMFIWYRFVIQDALHEASSGK 135
            DFPP   R+ DAH++WH  TIPLM +WYRFV+ D  +E   GK
Sbjct:  275 DFPPFL-RVFDAHSLWHFSTIPLMVLWYRFVLLDTPNEMRLGK 316
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BLAST of mRNA_F-distichus_contig10778.662.1 vs. uniprot
Match: A0A7S0VAC8_9CHLO (Post-GPI attachment to proteins factor 3 n=1 Tax=Polytomella parva TaxID=51329 RepID=A0A7S0VAC8_9CHLO)

HSP 1 Score: 56.6 bits (135), Expect = 4.490e-8
Identity = 20/34 (58.82%), Postives = 28/34 (82.35%), Query Frame = 1 
Query:    7 DFPPVANRLLDAHAVWHGVTIPLMFIWYRFVIQD 108
            DFPP+ N+L+DAHA+WH VT+PL F++Y F+  D
Sbjct:  325 DFPPIYNKLVDAHALWHAVTVPLTFLFYSFIQGD 358
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BLAST of mRNA_F-distichus_contig10778.662.1 vs. uniprot
Match: A0A0L0TER1_ALLM3 (Post-GPI attachment to proteins factor 3 n=1 Tax=Allomyces macrogynus (strain ATCC 38327) TaxID=578462 RepID=A0A0L0TER1_ALLM3)

HSP 1 Score: 53.1 bits (126), Expect = 6.950e-8
Identity = 20/36 (55.56%), Postives = 27/36 (75.00%), Query Frame = 1 
Query:    1 VGDFPPVANRLLDAHAVWHGVTIPLMFIWYRFVIQD 108
            VGDF PV    +DAHA+WH  T+PL+ +WYRF++ D
Sbjct:   40 VGDFAPVFWETVDAHALWHLATVPLIPLWYRFLVAD 75
The following BLAST results are available for this feature:
BLAST of mRNA_F-distichus_contig10778.662.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L2L9_9PHAE9.630e-1371.43Post-GPI attachment to proteins factor 3 n=1 Tax=E... [more]
D8LDA6_ECTSI3.830e-1268.75Post-GPI attachment to proteins factor 3 n=1 Tax=E... [more]
A0A147B951_9ACAR9.140e-1056.52Post-GPI attachment to proteins factor 3 (Fragment... [more]
A0A1X2IPY6_9FUNG9.440e-1060.00Post-GPI attachment to proteins factor 3 n=1 Tax=A... [more]
A0A075AX79_ROZAC2.370e-955.56Post-GPI attachment to proteins factor 3 n=1 Tax=R... [more]
A0A1X2I6B4_9FUNG2.440e-954.55Post-GPI attachment to proteins factor 3 n=1 Tax=A... [more]
A0A0B6Y5Y1_9EUPU3.000e-951.11Post-GPI attachment to proteins factor 3 (Fragment... [more]
A0A8H7SCW3_9FUNG4.240e-855.81Post-GPI attachment to proteins factor 3 n=1 Tax=M... [more]
A0A7S0VAC8_9CHLO4.490e-858.82Post-GPI attachment to proteins factor 3 n=1 Tax=P... [more]
A0A0L0TER1_ALLM36.950e-855.56Post-GPI attachment to proteins factor 3 n=1 Tax=A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
F-distichus_contig10778contigF-distichus_contig10778:3288..3431 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score69.7
Seed ortholog evalue4.2e-10
Seed eggNOG ortholog2880.D8LDA6
Preferred namePGAP3
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000322,GO:0000323,GO:0000324,GO:0000329,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0006464,GO:0006497,GO:0006505,GO:0006506,GO:0006629,GO:0006643,GO:0006644,GO:0006650,GO:0006661,GO:0006664,GO:0006793,GO:0006796,GO:0006807,GO:0006873,GO:0006875,GO:0008150,GO:0008152,GO:0008610,GO:0008654,GO:0009058,GO:0009059,GO:0009247,GO:0009987,GO:0012505,GO:0016020,GO:0016021,GO:0016787,GO:0016788,GO:0019538,GO:0019637,GO:0019725,GO:0030003,GO:0030026,GO:0031090,GO:0031224,GO:0031227,GO:0031984,GO:0034645,GO:0036211,GO:0042157,GO:0042158,GO:0042175,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0044237,GO:0044238,GO:0044249,GO:0044255,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045017,GO:0046467,GO:0046474,GO:0046486,GO:0046488,GO:0046916,GO:0048878,GO:0050801,GO:0055065,GO:0055071,GO:0055076,GO:0055080,GO:0055082,GO:0065007,GO:0065008,GO:0071704,GO:0090407,GO:0098588,GO:0098771,GO:0098805,GO:0098827,GO:0098852,GO:1901135,GO:1901137,GO:1901564,GO:1901566,GO:1901576,GO:1903509
EggNOG free text desc.GPI anchor metabolic process
EggNOG OGsCOG5237@1,KOG2970@2759
COG Functional cat.Q
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons1
Model size144
Cds size144
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622929011.8537784-CDS-F-distichus_contig10778:3287..34311622929011.8537784-CDS-F-distichus_contig10778:3287..3431Fucus distichus monoicousCDSF-distichus_contig10778 3288..3431 +
1690885105.118019-CDS-F-distichus_contig10778:3287..34311690885105.118019-CDS-F-distichus_contig10778:3287..3431Fucus distichus monoicousCDSF-distichus_contig10778 3288..3431 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_F-distichus_contig10778.662.1prot_F-distichus_contig10778.662.1Fucus distichus monoicouspolypeptideF-distichus_contig10778 3288..3431 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_F-distichus_contig10778.662.1

>prot_F-distichus_contig10778.662.1 ID=prot_F-distichus_contig10778.662.1|Name=mRNA_F-distichus_contig10778.662.1|organism=Fucus distichus monoicous|type=polypeptide|length=48bp
VGDFPPVANRLLDAHAVWHGVTIPLMFIWYRFVIQDALHEASSGKAT*
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mRNA from alignment at F-distichus_contig10778:3288..3431+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_F-distichus_contig10778.662.1 ID=mRNA_F-distichus_contig10778.662.1|Name=mRNA_F-distichus_contig10778.662.1|organism=Fucus distichus monoicous|type=mRNA|length=144bp|location=Sequence derived from alignment at F-distichus_contig10778:3288..3431+ (Fucus distichus monoicous)
GTGGGCGATTTCCCCCCGGTTGCAAACCGCCTGCTGGACGCACACGCAGT
CTGGCACGGGGTAACGATTCCGCTCATGTTCATCTGGTACCGATTCGTGA
TACAAGACGCCCTGCACGAGGCGTCTTCGGGCAAGGCGACTTGA
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Coding sequence (CDS) from alignment at F-distichus_contig10778:3288..3431+

>mRNA_F-distichus_contig10778.662.1 ID=mRNA_F-distichus_contig10778.662.1|Name=mRNA_F-distichus_contig10778.662.1|organism=Fucus distichus monoicous|type=CDS|length=288bp|location=Sequence derived from alignment at F-distichus_contig10778:3288..3431+ (Fucus distichus monoicous)
GTGGGCGATTTCCCCCCGGTTGCAAACCGCCTGCTGGACGCACACGCAGT
CTGGCACGGGGTAACGATTCCGCTCATGTTCATCTGGTACCGATTCGTGA
TACAAGACGCCCTGCACGAGGCGTCTTCGGGCAAGGCGACTTGAGTGGGC
GATTTCCCCCCGGTTGCAAACCGCCTGCTGGACGCACACGCAGTCTGGCA
CGGGGTAACGATTCCGCTCATGTTCATCTGGTACCGATTCGTGATACAAG
ACGCCCTGCACGAGGCGTCTTCGGGCAAGGCGACTTGA
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